EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000006227 (Gene tree)
Gene ID: 101943995
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 261 bases
Position: chrKK088235.1:12169571-12169831
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000007921	LSM	PF01423.22	1.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000009541	-	261	XM_005287666	ENSCPBP00000007921	86 (aa)	XP_005287723	UPI000388B684

Gene Model

Click here to download ENSCPBG00000006227's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000006227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000006227	-	99	87.059	ENSCPBG00000024287	-	60	89.189
ENSCPBG00000006227	-	78	76.119	ENSCPBG00000021923	-	84	76.119
ENSCPBG00000006227	-	100	82.558	ENSCPBG00000026463	-	87	84.000
ENSCPBG00000006227	-	78	46.269	ENSCPBG00000027472	LSM6	71	46.269
ENSCPBG00000006227	-	50	93.023	ENSCPBG00000001948	-	83	93.023
ENSCPBG00000006227	-	100	81.395	ENSCPBG00000001985	-	89	84.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000006227	-	87	92.000	ENSG00000139343	SNRPF	87	92.000	Homo_sapiens
ENSCPBG00000006227	-	86	89.189	ENSAPOG00000003377	snrpf	58	89.189	Acanthochromis_polyacanthus
ENSCPBG00000006227	-	86	91.892	ENSAMEG00000002166	-	87	91.892	Ailuropoda_melanoleuca
ENSCPBG00000006227	-	88	80.263	ENSAMEG00000018718	-	87	81.333	Ailuropoda_melanoleuca
ENSCPBG00000006227	-	85	89.041	ENSACIG00000013216	snrpf	86	89.041	Amphilophus_citrinellus
ENSCPBG00000006227	-	85	89.041	ENSAOCG00000015108	snrpf	86	89.041	Amphiprion_ocellaris
ENSCPBG00000006227	-	85	89.041	ENSAPEG00000022022	snrpf	86	89.041	Amphiprion_percula
ENSCPBG00000006227	-	85	89.041	ENSATEG00000022625	snrpf	78	89.041	Anabas_testudineus
ENSCPBG00000006227	-	86	90.541	ENSACAG00000014073	SNRPF	85	90.541	Anolis_carolinensis
ENSCPBG00000006227	-	83	83.099	ENSANAG00000020297	-	65	83.099	Aotus_nancymaae
ENSCPBG00000006227	-	87	62.667	ENSANAG00000025860	-	85	62.667	Aotus_nancymaae
ENSCPBG00000006227	-	87	92.000	ENSANAG00000032845	SNRPF	87	92.000	Aotus_nancymaae
ENSCPBG00000006227	-	85	89.041	ENSACLG00000016066	snrpf	86	89.041	Astatotilapia_calliptera
ENSCPBG00000006227	-	87	86.667	ENSAMXG00000007421	snrpf	87	86.667	Astyanax_mexicanus
ENSCPBG00000006227	-	91	85.897	ENSBTAG00000050012	-	93	85.333	Bos_taurus
ENSCPBG00000006227	-	87	92.000	ENSBTAG00000016271	SNRPF	87	92.000	Bos_taurus
ENSCPBG00000006227	-	90	67.532	WBGene00004918	snr-5	85	69.444	Caenorhabditis_elegans
ENSCPBG00000006227	-	87	92.000	ENSCJAG00000002705	-	87	92.000	Callithrix_jacchus
ENSCPBG00000006227	-	85	83.562	ENSCAFG00000031151	-	85	86.301	Canis_familiaris
ENSCPBG00000006227	-	87	92.000	ENSCAFG00000006395	-	68	92.000	Canis_familiaris
ENSCPBG00000006227	-	91	80.769	ENSCAFG00020013161	-	74	88.571	Canis_lupus_dingo
ENSCPBG00000006227	-	85	83.562	ENSCAFG00020010823	-	85	86.301	Canis_lupus_dingo
ENSCPBG00000006227	-	87	80.000	ENSTSYG00000030635	-	87	80.000	Carlito_syrichta
ENSCPBG00000006227	-	93	86.250	ENSTSYG00000031636	-	61	87.671	Carlito_syrichta
ENSCPBG00000006227	-	87	85.526	ENSTSYG00000036502	-	87	85.526	Carlito_syrichta
ENSCPBG00000006227	-	86	91.892	ENSCAPG00000007242	SNRPF	87	91.892	Cavia_aperea
ENSCPBG00000006227	-	87	92.000	ENSCPOG00000013898	SNRPF	87	92.000	Cavia_porcellus
ENSCPBG00000006227	-	100	81.395	ENSCCAG00000033627	-	59	82.667	Cebus_capucinus
ENSCPBG00000006227	-	100	90.698	ENSCCAG00000017356	-	87	92.000	Cebus_capucinus
ENSCPBG00000006227	-	87	92.000	ENSCCAG00000037378	-	87	92.000	Cebus_capucinus
ENSCPBG00000006227	-	87	92.000	ENSCLAG00000007200	SNRPF	87	92.000	Chinchilla_lanigera
ENSCPBG00000006227	-	87	92.000	ENSCSAG00000003602	-	61	92.000	Chlorocebus_sabaeus
ENSCPBG00000006227	-	74	92.188	ENSCHOG00000009392	SNRPF	100	92.188	Choloepus_hoffmanni
ENSCPBG00000006227	-	99	81.176	ENSCSAVG00000007498	-	84	83.784	Ciona_savignyi
ENSCPBG00000006227	-	87	92.000	ENSCGRG00001017100	-	87	92.000	Cricetulus_griseus_chok1gshd
ENSCPBG00000006227	-	87	84.000	ENSCGRG00001008965	-	58	84.000	Cricetulus_griseus_chok1gshd
ENSCPBG00000006227	-	93	85.000	ENSCGRG00000018878	-	94	84.000	Cricetulus_griseus_crigri
ENSCPBG00000006227	-	87	92.000	ENSCGRG00000000336	-	87	92.000	Cricetulus_griseus_crigri
ENSCPBG00000006227	-	87	89.333	ENSCSEG00000004748	snrpf	87	89.333	Cynoglossus_semilaevis
ENSCPBG00000006227	-	86	89.189	ENSCVAG00000000397	snrpf	59	89.189	Cyprinodon_variegatus
ENSCPBG00000006227	-	87	87.013	ENSDARG00000105037	snrpf	88	87.013	Danio_rerio
ENSCPBG00000006227	-	87	76.000	ENSDNOG00000049373	-	65	76.000	Dasypus_novemcinctus
ENSCPBG00000006227	-	87	90.667	ENSDNOG00000048989	-	67	90.667	Dasypus_novemcinctus
ENSCPBG00000006227	-	84	83.333	ENSDORG00000025351	-	100	83.333	Dipodomys_ordii
ENSCPBG00000006227	-	69	89.831	ENSDORG00000029740	-	72	89.831	Dipodomys_ordii
ENSCPBG00000006227	-	99	72.941	FBgn0000426	SmF	84	74.324	Drosophila_melanogaster
ENSCPBG00000006227	-	87	92.000	ENSETEG00000001558	-	87	92.000	Echinops_telfairi
ENSCPBG00000006227	-	95	69.512	ENSEBUG00000001793	-	72	79.104	Eptatretus_burgeri
ENSCPBG00000006227	-	87	92.000	ENSECAG00000019817	SNRPF	61	92.000	Equus_caballus
ENSCPBG00000006227	-	86	91.892	ENSEEUG00000013509	SNRPF	87	91.892	Erinaceus_europaeus
ENSCPBG00000006227	-	87	86.667	ENSELUG00000003121	RUXF	87	86.667	Esox_lucius
ENSCPBG00000006227	-	100	83.721	ENSELUG00000007737	RUXF	86	85.333	Esox_lucius
ENSCPBG00000006227	-	98	73.810	ENSFCAG00000031148	-	69	72.000	Felis_catus
ENSCPBG00000006227	-	87	70.667	ENSFCAG00000021942	-	87	70.667	Felis_catus
ENSCPBG00000006227	-	87	92.000	ENSFCAG00000029966	-	87	92.000	Felis_catus
ENSCPBG00000006227	-	86	91.892	ENSFALG00000010799	SNRPF	86	91.892	Ficedula_albicollis
ENSCPBG00000006227	-	87	92.000	ENSFDAG00000002831	-	87	92.000	Fukomys_damarensis
ENSCPBG00000006227	-	86	89.189	ENSFHEG00000003240	snrpf	65	89.189	Fundulus_heteroclitus
ENSCPBG00000006227	-	86	89.189	ENSGMOG00000007741	snrpf	87	89.189	Gadus_morhua
ENSCPBG00000006227	-	87	92.000	ENSGALG00000011409	SNRPF	87	92.000	Gallus_gallus
ENSCPBG00000006227	-	85	89.041	ENSGAFG00000016187	snrpf	84	89.041	Gambusia_affinis
ENSCPBG00000006227	-	86	87.838	ENSGACG00000020055	snrpf	87	87.838	Gasterosteus_aculeatus
ENSCPBG00000006227	-	72	88.710	ENSGAGG00000020974	-	54	85.938	Gopherus_agassizii
ENSCPBG00000006227	-	92	82.278	ENSGAGG00000022991	-	80	85.294	Gopherus_agassizii
ENSCPBG00000006227	-	86	86.486	ENSGAGG00000012945	-	69	89.333	Gopherus_agassizii
ENSCPBG00000006227	-	70	85.000	ENSGAGG00000011163	-	86	89.796	Gopherus_agassizii
ENSCPBG00000006227	-	80	82.609	ENSGAGG00000014132	-	83	82.609	Gopherus_agassizii
ENSCPBG00000006227	-	92	70.886	ENSGGOG00000039564	-	90	69.333	Gorilla_gorilla
ENSCPBG00000006227	-	87	92.000	ENSGGOG00000001127	-	87	92.000	Gorilla_gorilla
ENSCPBG00000006227	-	98	75.000	ENSGGOG00000039936	-	83	73.333	Gorilla_gorilla
ENSCPBG00000006227	-	87	90.667	ENSHGLG00000021172	-	87	90.667	Heterocephalus_glaber_female
ENSCPBG00000006227	-	87	92.000	ENSHGLG00000009108	SNRPF	87	92.000	Heterocephalus_glaber_female
ENSCPBG00000006227	-	86	91.892	ENSHGLG00100008103	-	87	91.892	Heterocephalus_glaber_male
ENSCPBG00000006227	-	87	90.667	ENSHGLG00100019596	-	87	90.667	Heterocephalus_glaber_male
ENSCPBG00000006227	-	73	78.571	ENSHCOG00000018663	snrpf	55	78.571	Hippocampus_comes
ENSCPBG00000006227	-	87	89.333	ENSIPUG00000018994	snrpf	87	89.333	Ictalurus_punctatus
ENSCPBG00000006227	-	87	92.000	ENSSTOG00000010434	-	87	92.000	Ictidomys_tridecemlineatus
ENSCPBG00000006227	-	87	92.000	ENSJJAG00000011272	-	87	92.000	Jaculus_jaculus
ENSCPBG00000006227	-	100	73.256	ENSJJAG00000004558	-	89	74.667	Jaculus_jaculus
ENSCPBG00000006227	-	78	85.075	ENSJJAG00000004828	-	86	87.500	Jaculus_jaculus
ENSCPBG00000006227	-	100	76.744	ENSJJAG00000010502	-	89	78.667	Jaculus_jaculus
ENSCPBG00000006227	-	87	88.000	ENSKMAG00000013566	snrpf	87	88.000	Kryptolebias_marmoratus
ENSCPBG00000006227	-	87	88.000	ENSLBEG00000008800	snrpf	87	88.000	Labrus_bergylta
ENSCPBG00000006227	-	87	90.667	ENSLACG00000002456	-	64	90.667	Latimeria_chalumnae
ENSCPBG00000006227	-	87	86.667	ENSLOCG00000015744	snrpf	87	86.667	Lepisosteus_oculatus
ENSCPBG00000006227	-	86	91.892	ENSLAFG00000017426	SNRPF	86	91.892	Loxodonta_africana
ENSCPBG00000006227	-	85	87.671	ENSMAMG00000016593	snrpf	86	87.671	Mastacembelus_armatus
ENSCPBG00000006227	-	85	89.041	ENSMZEG00005014701	snrpf	86	89.041	Maylandia_zebra
ENSCPBG00000006227	-	86	90.541	ENSMGAG00000011453	-	67	90.541	Meleagris_gallopavo
ENSCPBG00000006227	-	73	90.476	ENSMAUG00000016909	-	85	90.476	Mesocricetus_auratus
ENSCPBG00000006227	-	70	86.667	ENSMAUG00000010289	-	64	91.837	Mesocricetus_auratus
ENSCPBG00000006227	-	87	86.667	ENSMAUG00000008799	-	87	86.667	Mesocricetus_auratus
ENSCPBG00000006227	-	73	90.476	ENSMAUG00000019737	-	85	90.476	Mesocricetus_auratus
ENSCPBG00000006227	-	87	92.000	ENSMICG00000012153	-	87	92.000	Microcebus_murinus
ENSCPBG00000006227	-	87	86.667	ENSMICG00000030494	-	60	86.667	Microcebus_murinus
ENSCPBG00000006227	-	87	77.333	ENSMOCG00000022166	-	82	77.333	Microtus_ochrogaster
ENSCPBG00000006227	-	79	75.000	ENSMOCG00000020220	-	87	75.000	Microtus_ochrogaster
ENSCPBG00000006227	-	87	92.000	ENSMOCG00000020437	Snrpf	87	92.000	Microtus_ochrogaster
ENSCPBG00000006227	-	86	87.838	ENSMMOG00000007127	snrpf	87	87.838	Mola_mola
ENSCPBG00000006227	-	87	92.000	ENSMODG00000008091	SNRPF	66	92.000	Monodelphis_domestica
ENSCPBG00000006227	-	85	89.041	ENSMALG00000012328	snrpf	86	89.041	Monopterus_albus
ENSCPBG00000006227	-	87	92.000	MGP_CAROLIEiJ_G0015735	-	87	92.000	Mus_caroli
ENSCPBG00000006227	-	87	92.000	ENSMUSG00000020018	Snrpf	87	92.000	Mus_musculus
ENSCPBG00000006227	-	87	92.000	MGP_PahariEiJ_G0031350	Snrpf	87	92.000	Mus_pahari
ENSCPBG00000006227	-	87	92.000	MGP_SPRETEiJ_G0016553	Snrpf	87	92.000	Mus_spretus
ENSCPBG00000006227	-	87	92.000	ENSMPUG00000007176	-	67	92.000	Mustela_putorius_furo
ENSCPBG00000006227	-	87	92.000	ENSMLUG00000027932	-	71	92.000	Myotis_lucifugus
ENSCPBG00000006227	-	100	75.581	ENSMLUG00000026269	-	71	74.667	Myotis_lucifugus
ENSCPBG00000006227	-	87	92.000	ENSMLUG00000029201	-	71	92.000	Myotis_lucifugus
ENSCPBG00000006227	-	87	92.000	ENSMLUG00000026149	-	71	92.000	Myotis_lucifugus
ENSCPBG00000006227	-	86	91.892	ENSMLUG00000013577	-	87	91.892	Myotis_lucifugus
ENSCPBG00000006227	-	87	92.000	ENSNGAG00000024292	-	87	92.000	Nannospalax_galili
ENSCPBG00000006227	-	73	84.127	ENSNGAG00000005851	-	71	83.333	Nannospalax_galili
ENSCPBG00000006227	-	86	89.189	ENSNBRG00000011682	snrpf	76	89.189	Neolamprologus_brichardi
ENSCPBG00000006227	-	86	64.865	ENSMEUG00000000671	SNRPF	87	64.865	Notamacropus_eugenii
ENSCPBG00000006227	-	87	92.000	ENSODEG00000010328	-	87	92.000	Octodon_degus
ENSCPBG00000006227	-	87	90.667	ENSOCUG00000010925	SNRPF	66	90.667	Oryctolagus_cuniculus
ENSCPBG00000006227	-	86	86.486	ENSORLG00020008216	snrpf	87	86.486	Oryzias_latipes_hni
ENSCPBG00000006227	-	86	86.486	ENSORLG00015007418	snrpf	87	86.486	Oryzias_latipes_hsok
ENSCPBG00000006227	-	85	87.671	ENSOMEG00000003018	snrpf	86	87.671	Oryzias_melastigma
ENSCPBG00000006227	-	87	90.667	ENSOGAG00000030323	-	87	90.667	Otolemur_garnettii
ENSCPBG00000006227	-	87	92.000	ENSOARG00000011853	-	65	92.000	Ovis_aries
ENSCPBG00000006227	-	98	75.000	ENSPPAG00000037544	-	83	73.333	Pan_paniscus
ENSCPBG00000006227	-	92	69.620	ENSPPAG00000037479	-	91	68.000	Pan_paniscus
ENSCPBG00000006227	-	87	92.000	ENSPPRG00000005875	-	87	92.000	Panthera_pardus
ENSCPBG00000006227	-	98	72.619	ENSPPRG00000007449	-	77	73.333	Panthera_pardus
ENSCPBG00000006227	-	98	75.000	ENSPTIG00000005117	-	89	73.333	Panthera_tigris_altaica
ENSCPBG00000006227	-	87	92.000	ENSPTIG00000007520	SNRPF	87	92.000	Panthera_tigris_altaica
ENSCPBG00000006227	-	98	75.000	ENSPTRG00000043814	-	83	73.333	Pan_troglodytes
ENSCPBG00000006227	-	92	69.620	ENSPTRG00000047717	-	91	68.000	Pan_troglodytes
ENSCPBG00000006227	-	86	89.189	ENSPKIG00000014784	snrpf	81	89.189	Paramormyrops_kingsleyae
ENSCPBG00000006227	-	86	91.892	ENSPSIG00000016462	SNRPF	86	91.892	Pelodiscus_sinensis
ENSCPBG00000006227	-	86	87.838	ENSPMGG00000023548	snrpf	87	87.838	Periophthalmus_magnuspinnatus
ENSCPBG00000006227	-	87	92.000	ENSPEMG00000023326	Snrpf	87	92.000	Peromyscus_maniculatus_bairdii
ENSCPBG00000006227	-	85	89.041	ENSPLAG00000023932	snrpf	86	89.041	Poecilia_latipinna
ENSCPBG00000006227	-	85	89.041	ENSPMEG00000003377	snrpf	86	89.041	Poecilia_mexicana
ENSCPBG00000006227	-	85	89.041	ENSPREG00000022635	snrpf	84	89.041	Poecilia_reticulata
ENSCPBG00000006227	-	87	92.000	ENSPPYG00000004847	-	87	92.000	Pongo_abelii
ENSCPBG00000006227	-	87	92.000	ENSPCOG00000023833	-	87	92.000	Propithecus_coquereli
ENSCPBG00000006227	-	87	92.000	ENSPVAG00000009036	SNRPF	87	92.000	Pteropus_vampyrus
ENSCPBG00000006227	-	85	89.041	ENSPNYG00000021712	snrpf	86	89.041	Pundamilia_nyererei
ENSCPBG00000006227	-	85	87.671	ENSPNAG00000019117	snrpf	86	87.671	Pygocentrus_nattereri
ENSCPBG00000006227	-	87	92.000	ENSRNOG00000005556	Snrpf	87	92.000	Rattus_norvegicus
ENSCPBG00000006227	-	87	89.333	ENSRBIG00000030414	-	87	89.333	Rhinopithecus_bieti
ENSCPBG00000006227	-	87	89.333	ENSRROG00000021975	-	87	89.333	Rhinopithecus_roxellana
ENSCPBG00000006227	-	81	54.930	YPR182W	SMX3	83	54.930	Saccharomyces_cerevisiae
ENSCPBG00000006227	-	87	92.000	ENSSBOG00000036179	-	87	92.000	Saimiri_boliviensis_boliviensis
ENSCPBG00000006227	-	87	92.000	ENSSBOG00000012868	-	87	92.000	Saimiri_boliviensis_boliviensis
ENSCPBG00000006227	-	91	75.309	ENSSBOG00000027638	-	91	75.309	Saimiri_boliviensis_boliviensis
ENSCPBG00000006227	-	87	77.333	ENSSBOG00000032297	-	86	77.333	Saimiri_boliviensis_boliviensis
ENSCPBG00000006227	-	86	91.892	ENSSHAG00000012294	SNRPF	67	91.892	Sarcophilus_harrisii
ENSCPBG00000006227	-	74	89.062	ENSSFOG00015021523	snrpf	96	89.062	Scleropages_formosus
ENSCPBG00000006227	-	87	86.667	ENSSMAG00000005533	snrpf	86	86.667	Scophthalmus_maximus
ENSCPBG00000006227	-	76	89.231	ENSSDUG00000016283	snrpf	77	89.231	Seriola_dumerili
ENSCPBG00000006227	-	93	71.250	ENSSLDG00000003885	-	90	72.973	Seriola_lalandi_dorsalis
ENSCPBG00000006227	-	87	88.000	ENSSLDG00000005119	snrpf	87	88.000	Seriola_lalandi_dorsalis
ENSCPBG00000006227	-	85	91.781	ENSSPUG00000014590	-	86	91.781	Sphenodon_punctatus
ENSCPBG00000006227	-	86	89.189	ENSSPAG00000003283	snrpf	84	89.189	Stegastes_partitus
ENSCPBG00000006227	-	87	92.000	ENSSSCG00000000895	SNRPF	87	92.000	Sus_scrofa
ENSCPBG00000006227	-	67	86.207	ENSTRUG00000014956	snrpf	84	86.207	Takifugu_rubripes
ENSCPBG00000006227	-	87	88.000	ENSTNIG00000012672	snrpf	87	88.000	Tetraodon_nigroviridis
ENSCPBG00000006227	-	87	65.333	ENSTTRG00000006070	SNRPF	87	65.333	Tursiops_truncatus
ENSCPBG00000006227	-	100	80.233	ENSUAMG00000001101	-	88	81.333	Ursus_americanus
ENSCPBG00000006227	-	87	92.000	ENSUAMG00000008176	-	87	92.000	Ursus_americanus
ENSCPBG00000006227	-	87	81.333	ENSUMAG00000006177	-	88	81.333	Ursus_maritimus
ENSCPBG00000006227	-	87	92.000	ENSUMAG00000003528	-	87	92.000	Ursus_maritimus
ENSCPBG00000006227	-	87	92.000	ENSVPAG00000008712	-	87	92.000	Vicugna_pacos
ENSCPBG00000006227	-	91	85.897	ENSVVUG00000023821	-	96	85.333	Vulpes_vulpes
ENSCPBG00000006227	-	86	67.105	ENSXETG00000021630	snrpf	87	67.105	Xenopus_tropicalis
ENSCPBG00000006227	-	85	89.041	ENSXCOG00000013860	snrpf	84	89.041	Xiphophorus_couchianus
ENSCPBG00000006227	-	85	89.041	ENSXMAG00000015448	snrpf	86	89.041	Xiphophorus_maculatus