EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000006569 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 8348 bases
Position: chr2:41005339-41013686
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000008420	LSM	PF01423.22	2.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000010119	LSM1-201	1660	-	ENSCPBP00000008420	148 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000006569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000006569's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000006569	LSM1	58	35.632	ENSCPBG00000008154	LSM8	89	35.632

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000006569	LSM1	86	88.976	ENSG00000175324	LSM1	95	88.976	Homo_sapiens
ENSCPBG00000006569	LSM1	86	79.528	ENSAPOG00000010833	lsm1	95	79.528	Acanthochromis_polyacanthus
ENSCPBG00000006569	LSM1	86	88.976	ENSAMEG00000011141	LSM1	95	88.976	Ailuropoda_melanoleuca
ENSCPBG00000006569	LSM1	86	79.528	ENSAOCG00000017997	-	95	79.528	Amphiprion_ocellaris
ENSCPBG00000006569	LSM1	86	79.528	ENSAOCG00000017096	lsm1	95	79.528	Amphiprion_ocellaris
ENSCPBG00000006569	LSM1	86	79.528	ENSAPEG00000011669	lsm1	95	79.528	Amphiprion_percula
ENSCPBG00000006569	LSM1	86	79.528	ENSATEG00000022266	lsm1	95	79.528	Anabas_testudineus
ENSCPBG00000006569	LSM1	86	88.976	ENSANAG00000027785	LSM1	95	88.976	Aotus_nancymaae
ENSCPBG00000006569	LSM1	86	79.528	ENSACLG00000011400	lsm1	95	79.528	Astatotilapia_calliptera
ENSCPBG00000006569	LSM1	86	81.890	ENSAMXG00000005441	lsm1	95	81.890	Astyanax_mexicanus
ENSCPBG00000006569	LSM1	86	88.189	ENSBTAG00000001612	LSM1	95	88.189	Bos_taurus
ENSCPBG00000006569	LSM1	71	51.402	WBGene00003076	lsm-1	82	51.402	Caenorhabditis_elegans
ENSCPBG00000006569	LSM1	86	88.189	ENSCJAG00000048015	LSM1	95	88.189	Callithrix_jacchus
ENSCPBG00000006569	LSM1	86	88.976	ENSCAFG00000006113	LSM1	95	88.976	Canis_familiaris
ENSCPBG00000006569	LSM1	86	88.976	ENSCAFG00020001822	LSM1	95	88.976	Canis_lupus_dingo
ENSCPBG00000006569	LSM1	86	88.976	ENSCHIG00000013194	LSM1	95	88.976	Capra_hircus
ENSCPBG00000006569	LSM1	86	88.976	ENSTSYG00000010394	LSM1	95	88.976	Carlito_syrichta
ENSCPBG00000006569	LSM1	86	88.976	ENSCPOG00000032671	LSM1	95	88.976	Cavia_porcellus
ENSCPBG00000006569	LSM1	86	88.976	ENSCCAG00000037171	LSM1	95	88.976	Cebus_capucinus
ENSCPBG00000006569	LSM1	86	88.976	ENSCATG00000020377	LSM1	95	88.976	Cercocebus_atys
ENSCPBG00000006569	LSM1	86	87.402	ENSCLAG00000001137	LSM1	95	87.402	Chinchilla_lanigera
ENSCPBG00000006569	LSM1	86	88.976	ENSCSAG00000015485	LSM1	95	88.976	Chlorocebus_sabaeus
ENSCPBG00000006569	LSM1	86	88.189	ENSCHOG00000006030	LSM1	95	88.189	Choloepus_hoffmanni
ENSCPBG00000006569	LSM1	85	61.905	ENSCING00000013536	-	95	61.905	Ciona_intestinalis
ENSCPBG00000006569	LSM1	86	88.976	ENSCANG00000019173	LSM1	95	88.976	Colobus_angolensis_palliatus
ENSCPBG00000006569	LSM1	86	88.189	ENSCGRG00001024560	-	95	88.189	Cricetulus_griseus_chok1gshd
ENSCPBG00000006569	LSM1	70	74.074	ENSCGRG00001002259	-	94	74.074	Cricetulus_griseus_chok1gshd
ENSCPBG00000006569	LSM1	70	74.074	ENSCGRG00000013603	-	94	74.074	Cricetulus_griseus_crigri
ENSCPBG00000006569	LSM1	86	88.189	ENSCGRG00000006554	-	95	88.189	Cricetulus_griseus_crigri
ENSCPBG00000006569	LSM1	86	78.740	ENSCSEG00000010570	lsm1	88	78.740	Cynoglossus_semilaevis
ENSCPBG00000006569	LSM1	86	78.740	ENSCSEG00000008319	lsm1	88	78.740	Cynoglossus_semilaevis
ENSCPBG00000006569	LSM1	86	78.740	ENSCVAG00000003871	lsm1	95	78.740	Cyprinodon_variegatus
ENSCPBG00000006569	LSM1	86	81.102	ENSDARG00000043177	lsm1	95	81.102	Danio_rerio
ENSCPBG00000006569	LSM1	79	67.521	ENSDNOG00000046620	-	98	67.521	Dasypus_novemcinctus
ENSCPBG00000006569	LSM1	86	88.976	ENSDNOG00000046387	-	95	88.976	Dasypus_novemcinctus
ENSCPBG00000006569	LSM1	85	83.333	ENSDNOG00000030989	-	95	83.333	Dasypus_novemcinctus
ENSCPBG00000006569	LSM1	86	88.976	ENSDNOG00000032911	-	95	88.976	Dasypus_novemcinctus
ENSCPBG00000006569	LSM1	86	88.976	ENSDORG00000028172	Lsm1	95	88.976	Dipodomys_ordii
ENSCPBG00000006569	LSM1	77	65.789	FBgn0261067	LSm1	83	65.789	Drosophila_melanogaster
ENSCPBG00000006569	LSM1	86	87.402	ENSEASG00005016677	LSM1	95	87.402	Equus_asinus_asinus
ENSCPBG00000006569	LSM1	86	87.402	ENSECAG00000010461	LSM1	95	87.402	Equus_caballus
ENSCPBG00000006569	LSM1	86	60.630	ENSEEUG00000015181	LSM1	94	60.630	Erinaceus_europaeus
ENSCPBG00000006569	LSM1	86	74.016	ENSELUG00000023374	lsm1	95	74.016	Esox_lucius
ENSCPBG00000006569	LSM1	86	79.528	ENSELUG00000002322	lsm1	95	79.528	Esox_lucius
ENSCPBG00000006569	LSM1	86	88.976	ENSFCAG00000039335	LSM1	95	88.976	Felis_catus
ENSCPBG00000006569	LSM1	80	98.305	ENSFALG00000006723	LSM1	100	98.305	Ficedula_albicollis
ENSCPBG00000006569	LSM1	86	88.976	ENSFDAG00000007658	LSM1	95	88.976	Fukomys_damarensis
ENSCPBG00000006569	LSM1	86	78.740	ENSFHEG00000009556	lsm1	95	78.740	Fundulus_heteroclitus
ENSCPBG00000006569	LSM1	86	77.165	ENSGMOG00000016651	lsm1	93	77.165	Gadus_morhua
ENSCPBG00000006569	LSM1	86	88.976	ENSGALG00000003245	LSM1	95	88.976	Gallus_gallus
ENSCPBG00000006569	LSM1	86	78.740	ENSGAFG00000011355	lsm1	95	78.740	Gambusia_affinis
ENSCPBG00000006569	LSM1	86	79.528	ENSGACG00000011763	lsm1	93	79.528	Gasterosteus_aculeatus
ENSCPBG00000006569	LSM1	86	92.913	ENSGAGG00000024065	LSM1	95	92.913	Gopherus_agassizii
ENSCPBG00000006569	LSM1	86	88.976	ENSGGOG00000022658	LSM1	95	88.976	Gorilla_gorilla
ENSCPBG00000006569	LSM1	80	85.593	ENSHBUG00000010897	lsm1	95	79.528	Haplochromis_burtoni
ENSCPBG00000006569	LSM1	86	88.976	ENSHGLG00000005711	LSM1	95	88.976	Heterocephalus_glaber_female
ENSCPBG00000006569	LSM1	74	84.545	ENSHGLG00000017574	-	93	84.545	Heterocephalus_glaber_female
ENSCPBG00000006569	LSM1	86	88.976	ENSHGLG00100017660	LSM1	95	88.976	Heterocephalus_glaber_male
ENSCPBG00000006569	LSM1	74	84.545	ENSHGLG00100012152	-	93	84.545	Heterocephalus_glaber_male
ENSCPBG00000006569	LSM1	86	78.740	ENSHCOG00000017233	lsm1	95	78.740	Hippocampus_comes
ENSCPBG00000006569	LSM1	86	80.315	ENSIPUG00000002312	LSM1	95	80.315	Ictalurus_punctatus
ENSCPBG00000006569	LSM1	86	87.402	ENSJJAG00000014605	-	95	87.402	Jaculus_jaculus
ENSCPBG00000006569	LSM1	86	79.528	ENSKMAG00000003016	lsm1	95	79.528	Kryptolebias_marmoratus
ENSCPBG00000006569	LSM1	86	79.528	ENSLBEG00000022352	lsm1	95	79.528	Labrus_bergylta
ENSCPBG00000006569	LSM1	82	90.909	ENSLACG00000010947	LSM1	100	90.909	Latimeria_chalumnae
ENSCPBG00000006569	LSM1	86	86.614	ENSLOCG00000015149	lsm1	95	86.614	Lepisosteus_oculatus
ENSCPBG00000006569	LSM1	86	88.976	ENSLAFG00000003534	LSM1	95	88.976	Loxodonta_africana
ENSCPBG00000006569	LSM1	86	88.976	ENSMFAG00000032661	LSM1	95	88.976	Macaca_fascicularis
ENSCPBG00000006569	LSM1	86	88.976	ENSMLEG00000034535	LSM1	95	88.976	Mandrillus_leucophaeus
ENSCPBG00000006569	LSM1	86	79.528	ENSMAMG00000007464	lsm1	95	79.528	Mastacembelus_armatus
ENSCPBG00000006569	LSM1	86	79.528	ENSMZEG00005010321	lsm1	95	79.528	Maylandia_zebra
ENSCPBG00000006569	LSM1	86	88.976	ENSMGAG00000002125	LSM1	95	88.976	Meleagris_gallopavo
ENSCPBG00000006569	LSM1	86	88.189	ENSMICG00000030726	LSM1	95	88.189	Microcebus_murinus
ENSCPBG00000006569	LSM1	86	88.189	ENSMOCG00000022817	Lsm1	95	88.189	Microtus_ochrogaster
ENSCPBG00000006569	LSM1	86	80.315	ENSMMOG00000015466	lsm1	95	80.315	Mola_mola
ENSCPBG00000006569	LSM1	86	91.339	ENSMODG00000010732	-	95	91.339	Monodelphis_domestica
ENSCPBG00000006569	LSM1	86	86.614	MGP_CAROLIEiJ_G0030930	Lsm1	95	86.614	Mus_caroli
ENSCPBG00000006569	LSM1	86	86.614	ENSMUSG00000037296	Lsm1	95	86.614	Mus_musculus
ENSCPBG00000006569	LSM1	86	86.614	MGP_PahariEiJ_G0021400	Lsm1	95	86.614	Mus_pahari
ENSCPBG00000006569	LSM1	86	86.614	MGP_SPRETEiJ_G0032049	Lsm1	95	86.614	Mus_spretus
ENSCPBG00000006569	LSM1	86	89.764	ENSMPUG00000009883	LSM1	95	89.764	Mustela_putorius_furo
ENSCPBG00000006569	LSM1	86	88.976	ENSMLUG00000003734	LSM1	95	88.976	Myotis_lucifugus
ENSCPBG00000006569	LSM1	86	88.189	ENSNGAG00000003753	Lsm1	95	88.189	Nannospalax_galili
ENSCPBG00000006569	LSM1	86	88.976	ENSNLEG00000029390	LSM1	95	88.976	Nomascus_leucogenys
ENSCPBG00000006569	LSM1	86	91.339	ENSMEUG00000014077	LSM1	95	91.339	Notamacropus_eugenii
ENSCPBG00000006569	LSM1	79	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSCPBG00000006569	LSM1	86	88.976	ENSODEG00000004834	LSM1	95	88.976	Octodon_degus
ENSCPBG00000006569	LSM1	86	79.528	ENSONIG00000010782	lsm1	95	79.528	Oreochromis_niloticus
ENSCPBG00000006569	LSM1	86	90.551	ENSOANG00000003256	LSM1	95	90.551	Ornithorhynchus_anatinus
ENSCPBG00000006569	LSM1	86	88.976	ENSOCUG00000015399	LSM1	95	88.976	Oryctolagus_cuniculus
ENSCPBG00000006569	LSM1	86	81.102	ENSORLG00000030288	lsm1	95	81.102	Oryzias_latipes
ENSCPBG00000006569	LSM1	86	79.528	ENSORLG00020006213	-	82	79.528	Oryzias_latipes_hni
ENSCPBG00000006569	LSM1	86	81.102	ENSORLG00020003941	lsm1	95	81.102	Oryzias_latipes_hni
ENSCPBG00000006569	LSM1	86	81.102	ENSORLG00015018350	lsm1	95	81.102	Oryzias_latipes_hsok
ENSCPBG00000006569	LSM1	86	79.528	ENSOMEG00000012454	lsm1	95	79.528	Oryzias_melastigma
ENSCPBG00000006569	LSM1	86	88.976	ENSOGAG00000015161	LSM1	95	88.976	Otolemur_garnettii
ENSCPBG00000006569	LSM1	86	88.976	ENSOARG00000001317	LSM1	95	88.976	Ovis_aries
ENSCPBG00000006569	LSM1	86	88.976	ENSPPAG00000032279	LSM1	95	88.976	Pan_paniscus
ENSCPBG00000006569	LSM1	86	88.976	ENSPPRG00000014172	-	95	88.976	Panthera_pardus
ENSCPBG00000006569	LSM1	86	88.976	ENSPTIG00000010289	LSM1	95	88.976	Panthera_tigris_altaica
ENSCPBG00000006569	LSM1	86	88.976	ENSPTRG00000020169	LSM1	95	88.976	Pan_troglodytes
ENSCPBG00000006569	LSM1	86	88.976	ENSPANG00000008814	LSM1	95	88.976	Papio_anubis
ENSCPBG00000006569	LSM1	86	77.953	ENSPKIG00000019409	LSM1	95	77.953	Paramormyrops_kingsleyae
ENSCPBG00000006569	LSM1	80	89.831	ENSPKIG00000001839	lsm1	95	83.465	Paramormyrops_kingsleyae
ENSCPBG00000006569	LSM1	86	97.638	ENSPSIG00000012563	LSM1	98	97.638	Pelodiscus_sinensis
ENSCPBG00000006569	LSM1	76	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSCPBG00000006569	LSM1	86	89.764	ENSPCIG00000008880	LSM1	95	89.764	Phascolarctos_cinereus
ENSCPBG00000006569	LSM1	86	78.740	ENSPFOG00000016029	lsm1	95	78.740	Poecilia_formosa
ENSCPBG00000006569	LSM1	86	78.740	ENSPLAG00000007879	lsm1	95	78.740	Poecilia_latipinna
ENSCPBG00000006569	LSM1	86	78.740	ENSPMEG00000023550	lsm1	95	78.740	Poecilia_mexicana
ENSCPBG00000006569	LSM1	86	78.740	ENSPREG00000009574	lsm1	95	78.740	Poecilia_reticulata
ENSCPBG00000006569	LSM1	86	88.976	ENSPPYG00000018521	LSM1	95	88.976	Pongo_abelii
ENSCPBG00000006569	LSM1	86	88.976	ENSPCOG00000020901	-	95	88.976	Propithecus_coquereli
ENSCPBG00000006569	LSM1	86	88.976	ENSPVAG00000006016	LSM1	95	88.976	Pteropus_vampyrus
ENSCPBG00000006569	LSM1	86	79.528	ENSPNYG00000018067	lsm1	95	79.528	Pundamilia_nyererei
ENSCPBG00000006569	LSM1	86	81.102	ENSPNAG00000013707	lsm1	95	81.102	Pygocentrus_nattereri
ENSCPBG00000006569	LSM1	86	87.402	ENSRNOG00000015375	Lsm1	95	87.402	Rattus_norvegicus
ENSCPBG00000006569	LSM1	86	88.976	ENSRBIG00000027449	LSM1	95	88.976	Rhinopithecus_bieti
ENSCPBG00000006569	LSM1	86	88.976	ENSRROG00000036074	LSM1	95	88.976	Rhinopithecus_roxellana
ENSCPBG00000006569	LSM1	76	45.378	YJL124C	LSM1	69	45.378	Saccharomyces_cerevisiae
ENSCPBG00000006569	LSM1	86	91.339	ENSSHAG00000017260	LSM1	95	91.339	Sarcophilus_harrisii
ENSCPBG00000006569	LSM1	86	83.465	ENSSFOG00015019528	lsm1	95	83.465	Scleropages_formosus
ENSCPBG00000006569	LSM1	86	79.528	ENSSMAG00000004930	lsm1	95	79.528	Scophthalmus_maximus
ENSCPBG00000006569	LSM1	86	79.528	ENSSDUG00000021823	lsm1	95	79.528	Seriola_dumerili
ENSCPBG00000006569	LSM1	86	79.528	ENSSLDG00000012154	lsm1	95	79.528	Seriola_lalandi_dorsalis
ENSCPBG00000006569	LSM1	86	92.913	ENSSPUG00000014878	LSM1	95	92.913	Sphenodon_punctatus
ENSCPBG00000006569	LSM1	86	78.740	ENSSPAG00000020548	lsm1	95	78.740	Stegastes_partitus
ENSCPBG00000006569	LSM1	86	88.976	ENSSSCG00000039058	LSM1	95	88.976	Sus_scrofa
ENSCPBG00000006569	LSM1	86	92.126	ENSTGUG00000004793	LSM1	95	92.126	Taeniopygia_guttata
ENSCPBG00000006569	LSM1	86	81.890	ENSTRUG00000025239	lsm1	95	81.890	Takifugu_rubripes
ENSCPBG00000006569	LSM1	86	81.890	ENSTNIG00000004055	lsm1	95	81.890	Tetraodon_nigroviridis
ENSCPBG00000006569	LSM1	79	94.017	ENSTBEG00000015884	LSM1	100	94.017	Tupaia_belangeri
ENSCPBG00000006569	LSM1	86	88.976	ENSTTRG00000004482	LSM1	95	88.976	Tursiops_truncatus
ENSCPBG00000006569	LSM1	86	88.976	ENSUAMG00000004103	LSM1	95	88.976	Ursus_americanus
ENSCPBG00000006569	LSM1	86	88.976	ENSUMAG00000009132	LSM1	95	88.976	Ursus_maritimus
ENSCPBG00000006569	LSM1	86	88.976	ENSVVUG00000020191	LSM1	95	88.976	Vulpes_vulpes
ENSCPBG00000006569	LSM1	54	64.198	ENSVVUG00000014880	-	86	64.198	Vulpes_vulpes
ENSCPBG00000006569	LSM1	86	86.260	ENSXETG00000009004	lsm1	96	86.260	Xenopus_tropicalis
ENSCPBG00000006569	LSM1	86	77.953	ENSXCOG00000015631	lsm1	95	77.953	Xiphophorus_couchianus
ENSCPBG00000006569	LSM1	86	77.953	ENSXMAG00000026637	lsm1	95	77.953	Xiphophorus_maculatus