EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000006609 (Gene tree)
Gene ID: 101945694
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 131410 bases
Position: chrKK083043.1:1590361-1721770
Accession: 8609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000008472	R3H	PF01424.22	1.7e-06	1	1
ENSCPBP00000008480	R3H	PF01424.22	1.8e-06	1	1
ENSCPBP00000008472	RNA_bind	PF08675.11	2.6e-33	1	1
ENSCPBP00000008480	RNA_bind	PF08675.11	2.7e-33	1	1
ENSCPBP00000008480	CAF1	PF04857.20	2.3e-70	1	1
ENSCPBP00000008472	CAF1	PF04857.20	1.4e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000010185	PARN-202	2567	-	ENSCPBP00000008480	579 (aa)	XP_008171056	UPI00046C00B4
ENSCPBT00000010177	PARN-201	2658	-	ENSCPBP00000008472	556 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000006609's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000006609's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000006609	PARN	97	86.220	ENSG00000140694	PARN	97	85.918	Homo_sapiens
ENSCPBG00000006609	PARN	97	84.758	ENSAMEG00000011208	PARN	88	84.698	Ailuropoda_melanoleuca
ENSCPBG00000006609	PARN	86	73.913	ENSACIG00000000619	parn	77	74.052	Amphilophus_citrinellus
ENSCPBG00000006609	PARN	90	74.330	ENSAOCG00000003465	parn	74	74.330	Amphiprion_ocellaris
ENSCPBG00000006609	PARN	81	79.281	ENSAPEG00000010661	parn	91	79.281	Amphiprion_percula
ENSCPBG00000006609	PARN	90	75.954	ENSATEG00000004661	parn	74	75.954	Anabas_testudineus
ENSCPBG00000006609	PARN	97	90.731	ENSAPLG00000013914	PARN	88	90.731	Anas_platyrhynchos
ENSCPBG00000006609	PARN	90	86.398	ENSACAG00000004973	PARN	82	85.234	Anolis_carolinensis
ENSCPBG00000006609	PARN	97	84.730	ENSANAG00000031516	PARN	88	84.492	Aotus_nancymaae
ENSCPBG00000006609	PARN	90	75.191	ENSACLG00000004742	parn	75	75.191	Astatotilapia_calliptera
ENSCPBG00000006609	PARN	89	73.745	ENSAMXG00000012390	parn	83	72.201	Astyanax_mexicanus
ENSCPBG00000006609	PARN	97	85.289	ENSBTAG00000018097	PARN	97	85.027	Bos_taurus
ENSCPBG00000006609	PARN	97	85.130	ENSCJAG00000015866	PARN	89	84.340	Callithrix_jacchus
ENSCPBG00000006609	PARN	97	83.889	ENSCAFG00000018795	PARN	88	83.688	Canis_familiaris
ENSCPBG00000006609	PARN	97	83.704	ENSCAFG00020024126	PARN	88	83.511	Canis_lupus_dingo
ENSCPBG00000006609	PARN	50	30.034	ENSCAFG00020017742	PNLDC1	79	30.034	Canis_lupus_dingo
ENSCPBG00000006609	PARN	97	85.102	ENSCHIG00000018143	PARN	88	84.848	Capra_hircus
ENSCPBG00000006609	PARN	72	60.890	ENSCAPG00000007984	PARN	68	60.890	Cavia_aperea
ENSCPBG00000006609	PARN	94	84.261	ENSCPOG00000002263	PARN	88	82.155	Cavia_porcellus
ENSCPBG00000006609	PARN	97	85.102	ENSCCAG00000030367	PARN	88	85.027	Cebus_capucinus
ENSCPBG00000006609	PARN	81	91.277	ENSCATG00000041368	PARN	84	91.277	Cercocebus_atys
ENSCPBG00000006609	PARN	94	85.797	ENSCLAG00000015406	PARN	85	85.662	Chinchilla_lanigera
ENSCPBG00000006609	PARN	97	85.847	ENSCSAG00000008142	PARN	88	85.561	Chlorocebus_sabaeus
ENSCPBG00000006609	PARN	97	67.201	ENSCHOG00000007014	PARN	89	67.201	Choloepus_hoffmanni
ENSCPBG00000006609	PARN	78	43.949	ENSCING00000010142	-	89	43.949	Ciona_intestinalis
ENSCPBG00000006609	PARN	97	73.427	ENSCANG00000028849	-	89	72.274	Colobus_angolensis_palliatus
ENSCPBG00000006609	PARN	94	82.169	ENSCGRG00001012096	Parn	85	82.202	Cricetulus_griseus_chok1gshd
ENSCPBG00000006609	PARN	94	82.169	ENSCGRG00000004939	Parn	85	82.202	Cricetulus_griseus_crigri
ENSCPBG00000006609	PARN	90	70.342	ENSCSEG00000002064	parn	74	70.342	Cynoglossus_semilaevis
ENSCPBG00000006609	PARN	89	71.917	ENSCVAG00000014848	parn	74	71.917	Cyprinodon_variegatus
ENSCPBG00000006609	PARN	82	75.212	ENSDARG00000102634	parn	73	75.212	Danio_rerio
ENSCPBG00000006609	PARN	94	86.731	ENSDNOG00000000833	PARN	87	89.293	Dasypus_novemcinctus
ENSCPBG00000006609	PARN	62	87.000	ENSETEG00000014828	-	59	87.000	Echinops_telfairi
ENSCPBG00000006609	PARN	60	30.508	ENSEBUG00000008118	PNLDC1	61	30.508	Eptatretus_burgeri
ENSCPBG00000006609	PARN	97	84.358	ENSEASG00005011400	PARN	88	84.135	Equus_asinus_asinus
ENSCPBG00000006609	PARN	97	84.171	ENSECAG00000017792	PARN	88	83.957	Equus_caballus
ENSCPBG00000006609	PARN	82	72.152	ENSEEUG00000010370	PARN	74	72.152	Erinaceus_europaeus
ENSCPBG00000006609	PARN	89	73.745	ENSELUG00000013139	parn	67	73.745	Esox_lucius
ENSCPBG00000006609	PARN	97	85.556	ENSFCAG00000044961	PARN	90	84.803	Felis_catus
ENSCPBG00000006609	PARN	97	90.335	ENSFALG00000003911	PARN	87	90.196	Ficedula_albicollis
ENSCPBG00000006609	PARN	98	82.689	ENSFDAG00000009234	PARN	89	82.686	Fukomys_damarensis
ENSCPBG00000006609	PARN	90	67.366	ENSFHEG00000013738	parn	79	67.366	Fundulus_heteroclitus
ENSCPBG00000006609	PARN	81	76.842	ENSGMOG00000003231	parn	86	76.842	Gadus_morhua
ENSCPBG00000006609	PARN	97	89.127	ENSGALG00000003091	PARN	88	89.127	Gallus_gallus
ENSCPBG00000006609	PARN	89	72.937	ENSGAFG00000011061	parn	75	72.814	Gambusia_affinis
ENSCPBG00000006609	PARN	83	76.434	ENSGACG00000019501	parn	77	76.434	Gasterosteus_aculeatus
ENSCPBG00000006609	PARN	63	92.068	ENSGAGG00000023281	PARN	90	90.935	Gopherus_agassizii
ENSCPBG00000006609	PARN	94	87.115	ENSGGOG00000025224	PARN	90	85.893	Gorilla_gorilla
ENSCPBG00000006609	PARN	90	75.191	ENSHBUG00000017906	parn	84	74.603	Haplochromis_burtoni
ENSCPBG00000006609	PARN	97	82.900	ENSHGLG00000010886	PARN	88	82.888	Heterocephalus_glaber_female
ENSCPBG00000006609	PARN	97	82.900	ENSHGLG00100014659	PARN	88	82.888	Heterocephalus_glaber_male
ENSCPBG00000006609	PARN	87	68.824	ENSHCOG00000008683	parn	87	68.824	Hippocampus_comes
ENSCPBG00000006609	PARN	89	62.551	ENSIPUG00000012401	parn	75	62.548	Ictalurus_punctatus
ENSCPBG00000006609	PARN	94	85.192	ENSSTOG00000007519	PARN	85	84.743	Ictidomys_tridecemlineatus
ENSCPBG00000006609	PARN	94	81.768	ENSJJAG00000023049	Parn	85	81.801	Jaculus_jaculus
ENSCPBG00000006609	PARN	90	73.295	ENSKMAG00000009462	parn	74	73.295	Kryptolebias_marmoratus
ENSCPBG00000006609	PARN	90	73.282	ENSLBEG00000009167	parn	80	73.282	Labrus_bergylta
ENSCPBG00000006609	PARN	77	82.327	ENSLACG00000004207	PARN	85	81.717	Latimeria_chalumnae
ENSCPBG00000006609	PARN	91	78.244	ENSLOCG00000000715	parn	75	78.053	Lepisosteus_oculatus
ENSCPBG00000006609	PARN	51	30.492	ENSLAFG00000030189	PNLDC1	80	30.492	Loxodonta_africana
ENSCPBG00000006609	PARN	97	84.492	ENSLAFG00000015036	PARN	88	84.492	Loxodonta_africana
ENSCPBG00000006609	PARN	97	85.847	ENSMFAG00000044852	PARN	97	85.561	Macaca_fascicularis
ENSCPBG00000006609	PARN	97	86.034	ENSMMUG00000018849	PARN	89	85.283	Macaca_mulatta
ENSCPBG00000006609	PARN	97	85.847	ENSMNEG00000045108	PARN	89	85.094	Macaca_nemestrina
ENSCPBG00000006609	PARN	97	85.661	ENSMLEG00000031743	PARN	97	85.383	Mandrillus_leucophaeus
ENSCPBG00000006609	PARN	90	73.814	ENSMAMG00000006939	parn	75	73.814	Mastacembelus_armatus
ENSCPBG00000006609	PARN	90	75.191	ENSMZEG00005013590	parn	85	73.870	Maylandia_zebra
ENSCPBG00000006609	PARN	97	88.948	ENSMGAG00000001004	PARN	88	88.948	Meleagris_gallopavo
ENSCPBG00000006609	PARN	99	77.835	ENSMAUG00000008025	Parn	92	78.179	Mesocricetus_auratus
ENSCPBG00000006609	PARN	97	86.059	ENSMICG00000016053	PARN	90	85.283	Microcebus_murinus
ENSCPBG00000006609	PARN	75	87.760	ENSMOCG00000022211	Parn	87	87.760	Microtus_ochrogaster
ENSCPBG00000006609	PARN	86	72.727	ENSMMOG00000011333	parn	81	72.727	Mola_mola
ENSCPBG00000006609	PARN	75	93.533	ENSMODG00000004915	PARN	87	93.533	Monodelphis_domestica
ENSCPBG00000006609	PARN	89	74.904	ENSMALG00000019426	parn	84	76.389	Monopterus_albus
ENSCPBG00000006609	PARN	94	81.538	MGP_CAROLIEiJ_G0020466	Parn	85	81.250	Mus_caroli
ENSCPBG00000006609	PARN	94	81.923	ENSMUSG00000022685	Parn	85	81.618	Mus_musculus
ENSCPBG00000006609	PARN	94	82.308	MGP_PahariEiJ_G0016172	Parn	85	81.801	Mus_pahari
ENSCPBG00000006609	PARN	94	81.923	MGP_SPRETEiJ_G0021361	Parn	85	81.618	Mus_spretus
ENSCPBG00000006609	PARN	97	85.000	ENSMPUG00000014464	PARN	88	84.929	Mustela_putorius_furo
ENSCPBG00000006609	PARN	75	90.069	ENSMLUG00000005414	PARN	88	90.069	Myotis_lucifugus
ENSCPBG00000006609	PARN	86	73.705	ENSNBRG00000006805	parn	84	73.705	Neolamprologus_brichardi
ENSCPBG00000006609	PARN	97	85.661	ENSNLEG00000010241	PARN	89	84.906	Nomascus_leucogenys
ENSCPBG00000006609	PARN	97	58.289	ENSMEUG00000008178	-	89	58.289	Notamacropus_eugenii
ENSCPBG00000006609	PARN	97	78.966	ENSOPRG00000012187	PARN	89	78.966	Ochotona_princeps
ENSCPBG00000006609	PARN	94	75.824	ENSODEG00000001617	PARN	84	75.686	Octodon_degus
ENSCPBG00000006609	PARN	90	75.191	ENSONIG00000000151	parn	74	79.289	Oreochromis_niloticus
ENSCPBG00000006609	PARN	57	92.138	ENSOANG00000020155	-	87	89.021	Ornithorhynchus_anatinus
ENSCPBG00000006609	PARN	97	84.916	ENSOCUG00000000322	PARN	88	84.848	Oryctolagus_cuniculus
ENSCPBG00000006609	PARN	94	69.945	ENSORLG00020010313	parn	79	69.945	Oryzias_latipes_hni
ENSCPBG00000006609	PARN	94	69.763	ENSORLG00015000300	parn	79	69.763	Oryzias_latipes_hsok
ENSCPBG00000006609	PARN	90	72.137	ENSOMEG00000019555	parn	75	72.137	Oryzias_melastigma
ENSCPBG00000006609	PARN	75	88.194	ENSOGAG00000014626	PARN	87	88.194	Otolemur_garnettii
ENSCPBG00000006609	PARN	75	91.455	ENSOARG00000007574	PARN	88	91.455	Ovis_aries
ENSCPBG00000006609	PARN	97	86.059	ENSPPAG00000031438	PARN	89	85.283	Pan_paniscus
ENSCPBG00000006609	PARN	97	85.370	ENSPPRG00000018583	PARN	90	84.615	Panthera_pardus
ENSCPBG00000006609	PARN	97	85.370	ENSPTIG00000012135	PARN	90	84.615	Panthera_tigris_altaica
ENSCPBG00000006609	PARN	97	86.034	ENSPTRG00000007792	PARN	89	85.283	Pan_troglodytes
ENSCPBG00000006609	PARN	97	82.682	ENSPANG00000020099	PARN	89	82.075	Papio_anubis
ENSCPBG00000006609	PARN	90	74.664	ENSPKIG00000022807	parn	83	67.701	Paramormyrops_kingsleyae
ENSCPBG00000006609	PARN	97	96.097	ENSPSIG00000014804	PARN	97	96.078	Pelodiscus_sinensis
ENSCPBG00000006609	PARN	78	77.263	ENSPMGG00000014431	parn	71	71.961	Periophthalmus_magnuspinnatus
ENSCPBG00000006609	PARN	94	79.423	ENSPEMG00000018439	Parn	85	79.228	Peromyscus_maniculatus_bairdii
ENSCPBG00000006609	PARN	79	67.756	ENSPMAG00000003956	parn	88	67.756	Petromyzon_marinus
ENSCPBG00000006609	PARN	62	83.425	ENSPCIG00000001259	PARN	78	83.149	Phascolarctos_cinereus
ENSCPBG00000006609	PARN	89	73.218	ENSPFOG00000012823	parn	74	73.092	Poecilia_formosa
ENSCPBG00000006609	PARN	89	73.410	ENSPLAG00000006395	parn	74	73.282	Poecilia_latipinna
ENSCPBG00000006609	PARN	89	73.410	ENSPMEG00000007711	parn	74	73.282	Poecilia_mexicana
ENSCPBG00000006609	PARN	89	73.218	ENSPREG00000000147	parn	74	73.092	Poecilia_reticulata
ENSCPBG00000006609	PARN	97	85.847	ENSPPYG00000007123	PARN	88	85.561	Pongo_abelii
ENSCPBG00000006609	PARN	94	74.081	ENSPCAG00000001741	PARN	90	74.081	Procavia_capensis
ENSCPBG00000006609	PARN	97	83.244	ENSPCOG00000019292	PARN	89	82.264	Propithecus_coquereli
ENSCPBG00000006609	PARN	97	80.447	ENSPVAG00000002547	PARN	89	80.392	Pteropus_vampyrus
ENSCPBG00000006609	PARN	90	75.191	ENSPNYG00000006835	parn	85	70.980	Pundamilia_nyererei
ENSCPBG00000006609	PARN	89	73.077	ENSPNAG00000018905	parn	83	72.780	Pygocentrus_nattereri
ENSCPBG00000006609	PARN	93	82.205	ENSRNOG00000002912	Parn	98	84.848	Rattus_norvegicus
ENSCPBG00000006609	PARN	57	81.962	ENSRBIG00000018726	PARN	95	81.962	Rhinopithecus_bieti
ENSCPBG00000006609	PARN	57	81.962	ENSRROG00000011162	-	95	81.962	Rhinopithecus_roxellana
ENSCPBG00000006609	PARN	97	83.054	ENSSBOG00000034726	PARN	89	82.264	Saimiri_boliviensis_boliviensis
ENSCPBG00000006609	PARN	63	91.713	ENSSHAG00000008493	PARN	81	91.713	Sarcophilus_harrisii
ENSCPBG00000006609	PARN	98	71.958	ENSSFOG00015014165	parn	82	74.563	Scleropages_formosus
ENSCPBG00000006609	PARN	89	72.691	ENSSMAG00000000685	parn	82	68.411	Scophthalmus_maximus
ENSCPBG00000006609	PARN	89	74.237	ENSSDUG00000014555	parn	74	74.237	Seriola_dumerili
ENSCPBG00000006609	PARN	97	74.600	ENSSARG00000014339	PARN	97	74.600	Sorex_araneus
ENSCPBG00000006609	PARN	97	91.636	ENSSPUG00000007719	PARN	88	91.622	Sphenodon_punctatus
ENSCPBG00000006609	PARN	90	74.953	ENSSPAG00000007095	parn	80	71.627	Stegastes_partitus
ENSCPBG00000006609	PARN	97	84.815	ENSSSCG00000007878	PARN	78	84.752	Sus_scrofa
ENSCPBG00000006609	PARN	58	30.994	ENSTGUG00000011418	PNLDC1	65	30.994	Taeniopygia_guttata
ENSCPBG00000006609	PARN	97	90.706	ENSTGUG00000004971	PARN	88	90.553	Taeniopygia_guttata
ENSCPBG00000006609	PARN	89	73.755	ENSTNIG00000008252	parn	80	73.946	Tetraodon_nigroviridis
ENSCPBG00000006609	PARN	97	72.193	ENSTBEG00000010407	PARN	97	72.193	Tupaia_belangeri
ENSCPBG00000006609	PARN	97	79.516	ENSTTRG00000002843	PARN	89	79.501	Tursiops_truncatus
ENSCPBG00000006609	PARN	78	78.444	ENSUAMG00000008283	PARN	94	76.606	Ursus_americanus
ENSCPBG00000006609	PARN	97	84.815	ENSUMAG00000004527	PARN	88	84.752	Ursus_maritimus
ENSCPBG00000006609	PARN	97	81.607	ENSVPAG00000008968	PARN	91	81.607	Vicugna_pacos
ENSCPBG00000006609	PARN	97	84.630	ENSVVUG00000019509	PARN	88	84.397	Vulpes_vulpes
ENSCPBG00000006609	PARN	97	77.128	ENSXETG00000010994	parn	88	83.871	Xenopus_tropicalis
ENSCPBG00000006609	PARN	89	68.834	ENSXCOG00000015990	parn	85	68.750	Xiphophorus_couchianus
ENSCPBG00000006609	PARN	90	72.727	ENSXMAG00000014783	parn	74	72.727	Xiphophorus_maculatus