EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000007595 (Gene tree)
Gene ID: 101937564
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 23402 bases
Position: chrKK083045.1:1627259-1650660
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000009851	PRP21_like_P	PF12230.8	1.2e-51	1	1
ENSCPBP00000009851	Surp	PF01805.20	9e-46	1	2
ENSCPBP00000009851	Surp	PF01805.20	9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000011827	SF3A1-201	3810	-	ENSCPBP00000009851	788 (aa)	XP_005278857	UPI000388D25E

Gene Model

Click here to download ENSCPBG00000007595's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000007595's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000007595	SF3A1	100	91.562	ENSG00000099995	SF3A1	100	91.058	Homo_sapiens
ENSCPBG00000007595	SF3A1	100	82.219	ENSAPOG00000020465	sf3a1	100	82.346	Acanthochromis_polyacanthus
ENSCPBG00000007595	SF3A1	97	92.068	ENSAMEG00000007737	SF3A1	100	90.704	Ailuropoda_melanoleuca
ENSCPBG00000007595	SF3A1	100	82.598	ENSACIG00000020672	sf3a1	100	81.967	Amphilophus_citrinellus
ENSCPBG00000007595	SF3A1	100	82.219	ENSAOCG00000003060	sf3a1	100	82.219	Amphiprion_ocellaris
ENSCPBG00000007595	SF3A1	100	82.346	ENSAPEG00000010735	sf3a1	100	82.346	Amphiprion_percula
ENSCPBG00000007595	SF3A1	97	83.943	ENSATEG00000021201	sf3a1	99	82.129	Anabas_testudineus
ENSCPBG00000007595	SF3A1	97	96.494	ENSAPLG00000009057	SF3A1	99	96.494	Anas_platyrhynchos
ENSCPBG00000007595	SF3A1	100	87.624	ENSACAG00000009415	SF3A1	100	88.366	Anolis_carolinensis
ENSCPBG00000007595	SF3A1	100	91.310	ENSANAG00000032045	SF3A1	100	91.184	Aotus_nancymaae
ENSCPBG00000007595	SF3A1	100	83.059	ENSACLG00000012622	sf3a1	100	83.312	Astatotilapia_calliptera
ENSCPBG00000007595	SF3A1	99	82.084	ENSAMXG00000005382	sf3a1	100	82.719	Astyanax_mexicanus
ENSCPBG00000007595	SF3A1	100	91.310	ENSBTAG00000003390	SF3A1	100	91.184	Bos_taurus
ENSCPBG00000007595	SF3A1	82	45.455	WBGene00004188	prp-21	89	44.402	Caenorhabditis_elegans
ENSCPBG00000007595	SF3A1	100	91.436	ENSCJAG00000010370	SF3A1	100	91.310	Callithrix_jacchus
ENSCPBG00000007595	SF3A1	100	91.058	ENSCAFG00000012559	SF3A1	100	90.932	Canis_familiaris
ENSCPBG00000007595	SF3A1	100	91.058	ENSCAFG00020000838	SF3A1	100	90.932	Canis_lupus_dingo
ENSCPBG00000007595	SF3A1	100	91.184	ENSCHIG00000018642	SF3A1	100	91.058	Capra_hircus
ENSCPBG00000007595	SF3A1	100	91.058	ENSTSYG00000004739	SF3A1	100	90.932	Carlito_syrichta
ENSCPBG00000007595	SF3A1	96	76.548	ENSCAPG00000015414	SF3A1	99	76.253	Cavia_aperea
ENSCPBG00000007595	SF3A1	100	91.688	ENSCPOG00000014589	SF3A1	100	91.184	Cavia_porcellus
ENSCPBG00000007595	SF3A1	100	91.310	ENSCCAG00000032006	SF3A1	100	91.184	Cebus_capucinus
ENSCPBG00000007595	SF3A1	100	91.058	ENSCATG00000029241	SF3A1	100	90.932	Cercocebus_atys
ENSCPBG00000007595	SF3A1	100	91.058	ENSCLAG00000006508	SF3A1	100	90.932	Chinchilla_lanigera
ENSCPBG00000007595	SF3A1	100	91.184	ENSCSAG00000009470	SF3A1	100	91.058	Chlorocebus_sabaeus
ENSCPBG00000007595	SF3A1	58	96.190	ENSCHOG00000005201	SF3A1	64	96.190	Choloepus_hoffmanni
ENSCPBG00000007595	SF3A1	94	52.715	ENSCING00000008526	-	68	57.143	Ciona_intestinalis
ENSCPBG00000007595	SF3A1	97	51.403	ENSCSAVG00000005608	-	91	65.179	Ciona_savignyi
ENSCPBG00000007595	SF3A1	100	91.184	ENSCANG00000033564	SF3A1	100	91.058	Colobus_angolensis_palliatus
ENSCPBG00000007595	SF3A1	100	91.058	ENSCGRG00001008933	Sf3a1	100	90.932	Cricetulus_griseus_chok1gshd
ENSCPBG00000007595	SF3A1	100	91.058	ENSCGRG00000006127	Sf3a1	100	90.932	Cricetulus_griseus_crigri
ENSCPBG00000007595	SF3A1	100	81.566	ENSCSEG00000010792	sf3a1	100	81.566	Cynoglossus_semilaevis
ENSCPBG00000007595	SF3A1	100	82.346	ENSCVAG00000004560	sf3a1	100	80.429	Cyprinodon_variegatus
ENSCPBG00000007595	SF3A1	100	83.081	ENSDARG00000041887	sf3a1	100	82.955	Danio_rerio
ENSCPBG00000007595	SF3A1	98	91.763	ENSDNOG00000010629	SF3A1	100	90.704	Dasypus_novemcinctus
ENSCPBG00000007595	SF3A1	100	91.436	ENSDORG00000005613	Sf3a1	100	90.932	Dipodomys_ordii
ENSCPBG00000007595	SF3A1	85	60.949	FBgn0266917	Sf3a1	83	60.909	Drosophila_melanogaster
ENSCPBG00000007595	SF3A1	85	92.216	ENSETEG00000017194	SF3A1	100	90.313	Echinops_telfairi
ENSCPBG00000007595	SF3A1	100	65.755	ENSEBUG00000001285	sf3a1	100	65.670	Eptatretus_burgeri
ENSCPBG00000007595	SF3A1	100	91.436	ENSEASG00005010254	SF3A1	100	91.310	Equus_asinus_asinus
ENSCPBG00000007595	SF3A1	100	91.436	ENSECAG00000023962	SF3A1	100	91.310	Equus_caballus
ENSCPBG00000007595	SF3A1	73	93.443	ENSEEUG00000003159	SF3A1	83	93.443	Erinaceus_europaeus
ENSCPBG00000007595	SF3A1	100	81.533	ENSELUG00000022578	sf3a1	100	80.528	Esox_lucius
ENSCPBG00000007595	SF3A1	100	91.310	ENSFCAG00000011932	SF3A1	100	91.184	Felis_catus
ENSCPBG00000007595	SF3A1	96	93.360	ENSFALG00000006944	SF3A1	100	92.776	Ficedula_albicollis
ENSCPBG00000007595	SF3A1	100	90.932	ENSFDAG00000009560	SF3A1	100	90.806	Fukomys_damarensis
ENSCPBG00000007595	SF3A1	100	83.228	ENSFHEG00000010866	sf3a1	100	83.102	Fundulus_heteroclitus
ENSCPBG00000007595	SF3A1	100	80.608	ENSGMOG00000016024	sf3a1	100	79.594	Gadus_morhua
ENSCPBG00000007595	SF3A1	100	95.823	ENSGALG00000007937	SF3A1	100	95.823	Gallus_gallus
ENSCPBG00000007595	SF3A1	100	81.967	ENSGAFG00000009111	sf3a1	100	80.682	Gambusia_affinis
ENSCPBG00000007595	SF3A1	100	81.139	ENSGACG00000011893	sf3a1	100	80.633	Gasterosteus_aculeatus
ENSCPBG00000007595	SF3A1	96	99.470	ENSGAGG00000000762	SF3A1	99	99.470	Gopherus_agassizii
ENSCPBG00000007595	SF3A1	100	91.562	ENSGGOG00000012631	SF3A1	100	91.058	Gorilla_gorilla
ENSCPBG00000007595	SF3A1	100	83.059	ENSHBUG00000015795	sf3a1	100	84.197	Haplochromis_burtoni
ENSCPBG00000007595	SF3A1	100	91.184	ENSHGLG00000007907	SF3A1	100	91.058	Heterocephalus_glaber_female
ENSCPBG00000007595	SF3A1	100	91.184	ENSHGLG00100013799	SF3A1	100	91.058	Heterocephalus_glaber_male
ENSCPBG00000007595	SF3A1	100	80.051	ENSHCOG00000015423	sf3a1	100	78.365	Hippocampus_comes
ENSCPBG00000007595	SF3A1	97	81.323	ENSIPUG00000002470	sf3a1	99	81.582	Ictalurus_punctatus
ENSCPBG00000007595	SF3A1	100	91.310	ENSSTOG00000013892	SF3A1	100	91.184	Ictidomys_tridecemlineatus
ENSCPBG00000007595	SF3A1	100	91.321	ENSJJAG00000022566	Sf3a1	100	91.195	Jaculus_jaculus
ENSCPBG00000007595	SF3A1	100	81.967	ENSKMAG00000002400	sf3a1	100	81.463	Kryptolebias_marmoratus
ENSCPBG00000007595	SF3A1	100	82.197	ENSLBEG00000022974	sf3a1	100	81.692	Labrus_bergylta
ENSCPBG00000007595	SF3A1	100	85.624	ENSLACG00000003565	SF3A1	100	84.868	Latimeria_chalumnae
ENSCPBG00000007595	SF3A1	100	84.528	ENSLOCG00000008251	sf3a1	99	84.906	Lepisosteus_oculatus
ENSCPBG00000007595	SF3A1	100	90.932	ENSLAFG00000000448	SF3A1	100	90.932	Loxodonta_africana
ENSCPBG00000007595	SF3A1	99	57.955	ENSLAFG00000026032	-	99	57.955	Loxodonta_africana
ENSCPBG00000007595	SF3A1	100	91.058	ENSMFAG00000031979	SF3A1	100	90.932	Macaca_fascicularis
ENSCPBG00000007595	SF3A1	100	91.058	ENSMMUG00000005547	SF3A1	100	90.932	Macaca_mulatta
ENSCPBG00000007595	SF3A1	100	91.184	ENSMNEG00000037229	SF3A1	100	91.058	Macaca_nemestrina
ENSCPBG00000007595	SF3A1	100	91.184	ENSMLEG00000041908	SF3A1	100	91.058	Mandrillus_leucophaeus
ENSCPBG00000007595	SF3A1	97	84.088	ENSMAMG00000006460	sf3a1	97	83.571	Mastacembelus_armatus
ENSCPBG00000007595	SF3A1	100	83.059	ENSMZEG00005009633	sf3a1	100	83.312	Maylandia_zebra
ENSCPBG00000007595	SF3A1	97	96.489	ENSMGAG00000001330	SF3A1	99	96.489	Meleagris_gallopavo
ENSCPBG00000007595	SF3A1	93	88.813	ENSMAUG00000020317	Sf3a1	100	84.470	Mesocricetus_auratus
ENSCPBG00000007595	SF3A1	100	90.806	ENSMICG00000010038	SF3A1	100	90.680	Microcebus_murinus
ENSCPBG00000007595	SF3A1	100	91.184	ENSMOCG00000008438	Sf3a1	100	91.058	Microtus_ochrogaster
ENSCPBG00000007595	SF3A1	100	80.682	ENSMMOG00000015588	sf3a1	99	79.293	Mola_mola
ENSCPBG00000007595	SF3A1	100	91.919	ENSMODG00000009270	SF3A1	100	92.172	Monodelphis_domestica
ENSCPBG00000007595	SF3A1	100	81.977	ENSMALG00000000148	sf3a1	99	83.537	Monopterus_albus
ENSCPBG00000007595	SF3A1	100	90.680	MGP_CAROLIEiJ_G0016029	Sf3a1	100	90.554	Mus_caroli
ENSCPBG00000007595	SF3A1	100	90.680	ENSMUSG00000002129	Sf3a1	100	90.554	Mus_musculus
ENSCPBG00000007595	SF3A1	100	90.554	MGP_PahariEiJ_G0016862	Sf3a1	100	90.428	Mus_pahari
ENSCPBG00000007595	SF3A1	100	90.680	MGP_SPRETEiJ_G0016870	Sf3a1	100	90.554	Mus_spretus
ENSCPBG00000007595	SF3A1	100	90.806	ENSMPUG00000013144	SF3A1	100	90.680	Mustela_putorius_furo
ENSCPBG00000007595	SF3A1	100	91.184	ENSMLUG00000002139	SF3A1	100	91.058	Myotis_lucifugus
ENSCPBG00000007595	SF3A1	100	91.562	ENSNGAG00000016977	Sf3a1	100	91.058	Nannospalax_galili
ENSCPBG00000007595	SF3A1	100	82.331	ENSNBRG00000016642	sf3a1	100	82.581	Neolamprologus_brichardi
ENSCPBG00000007595	SF3A1	100	91.184	ENSNLEG00000003686	SF3A1	100	91.058	Nomascus_leucogenys
ENSCPBG00000007595	SF3A1	96	83.004	ENSMEUG00000008741	SF3A1	100	82.872	Notamacropus_eugenii
ENSCPBG00000007595	SF3A1	97	92.941	ENSOPRG00000016636	SF3A1	100	91.310	Ochotona_princeps
ENSCPBG00000007595	SF3A1	100	91.299	ENSODEG00000002571	SF3A1	100	91.173	Octodon_degus
ENSCPBG00000007595	SF3A1	100	81.313	ENSONIG00000010848	sf3a1	100	82.197	Oreochromis_niloticus
ENSCPBG00000007595	SF3A1	100	90.932	ENSOCUG00000007633	SF3A1	100	90.806	Oryctolagus_cuniculus
ENSCPBG00000007595	SF3A1	96	81.926	ENSORLG00000013050	sf3a1	99	82.850	Oryzias_latipes
ENSCPBG00000007595	SF3A1	99	80.407	ENSORLG00020003236	sf3a1	97	81.677	Oryzias_latipes_hni
ENSCPBG00000007595	SF3A1	100	82.427	ENSORLG00015017411	sf3a1	100	83.565	Oryzias_latipes_hsok
ENSCPBG00000007595	SF3A1	100	82.807	ENSOMEG00000013362	sf3a1	100	82.680	Oryzias_melastigma
ENSCPBG00000007595	SF3A1	100	90.806	ENSOGAG00000012931	SF3A1	100	90.680	Otolemur_garnettii
ENSCPBG00000007595	SF3A1	100	91.299	ENSOARG00000006849	SF3A1	100	90.668	Ovis_aries
ENSCPBG00000007595	SF3A1	100	90.428	ENSPPAG00000041790	SF3A1	100	89.421	Pan_paniscus
ENSCPBG00000007595	SF3A1	100	91.310	ENSPPRG00000004391	SF3A1	100	91.184	Panthera_pardus
ENSCPBG00000007595	SF3A1	97	92.198	ENSPTIG00000000844	SF3A1	99	92.418	Panthera_tigris_altaica
ENSCPBG00000007595	SF3A1	100	91.562	ENSPTRG00000014240	SF3A1	100	91.058	Pan_troglodytes
ENSCPBG00000007595	SF3A1	100	91.184	ENSPANG00000020772	SF3A1	100	91.058	Papio_anubis
ENSCPBG00000007595	SF3A1	83	96.703	ENSPSIG00000012803	SF3A1	96	98.488	Pelodiscus_sinensis
ENSCPBG00000007595	SF3A1	97	84.273	ENSPMGG00000023096	sf3a1	100	83.333	Periophthalmus_magnuspinnatus
ENSCPBG00000007595	SF3A1	100	91.184	ENSPEMG00000009494	Sf3a1	100	91.058	Peromyscus_maniculatus_bairdii
ENSCPBG00000007595	SF3A1	69	77.148	ENSPMAG00000007139	-	93	78.689	Petromyzon_marinus
ENSCPBG00000007595	SF3A1	100	91.414	ENSPCIG00000022692	SF3A1	100	91.667	Phascolarctos_cinereus
ENSCPBG00000007595	SF3A1	100	73.333	ENSPFOG00000016768	sf3a1	93	76.871	Poecilia_formosa
ENSCPBG00000007595	SF3A1	100	82.472	ENSPLAG00000017268	sf3a1	100	81.463	Poecilia_latipinna
ENSCPBG00000007595	SF3A1	84	83.759	ENSPMEG00000019811	sf3a1	98	82.530	Poecilia_mexicana
ENSCPBG00000007595	SF3A1	100	82.850	ENSPREG00000010347	sf3a1	100	81.967	Poecilia_reticulata
ENSCPBG00000007595	SF3A1	100	91.184	ENSPPYG00000011707	SF3A1	100	91.058	Pongo_abelii
ENSCPBG00000007595	SF3A1	57	97.510	ENSPCAG00000003266	SF3A1	57	97.510	Procavia_capensis
ENSCPBG00000007595	SF3A1	100	91.058	ENSPCOG00000026630	SF3A1	100	90.932	Propithecus_coquereli
ENSCPBG00000007595	SF3A1	94	91.689	ENSPVAG00000017719	SF3A1	100	87.657	Pteropus_vampyrus
ENSCPBG00000007595	SF3A1	100	83.059	ENSPNYG00000018706	sf3a1	100	84.197	Pundamilia_nyererei
ENSCPBG00000007595	SF3A1	99	81.922	ENSPNAG00000003721	sf3a1	99	82.174	Pygocentrus_nattereri
ENSCPBG00000007595	SF3A1	98	91.742	ENSRNOG00000005218	Sf3a1	100	90.680	Rattus_norvegicus
ENSCPBG00000007595	SF3A1	100	91.184	ENSRBIG00000032167	SF3A1	100	91.058	Rhinopithecus_bieti
ENSCPBG00000007595	SF3A1	100	91.184	ENSRROG00000044908	SF3A1	100	91.058	Rhinopithecus_roxellana
ENSCPBG00000007595	SF3A1	93	92.643	ENSSBOG00000021960	SF3A1	98	92.771	Saimiri_boliviensis_boliviensis
ENSCPBG00000007595	SF3A1	99	88.593	ENSSHAG00000003666	SF3A1	97	90.365	Sarcophilus_harrisii
ENSCPBG00000007595	SF3A1	100	82.663	ENSSFOG00015004579	sf3a1	100	83.417	Scleropages_formosus
ENSCPBG00000007595	SF3A1	100	81.795	ENSSMAG00000004275	sf3a1	100	81.037	Scophthalmus_maximus
ENSCPBG00000007595	SF3A1	100	83.081	ENSSDUG00000022219	sf3a1	100	81.818	Seriola_dumerili
ENSCPBG00000007595	SF3A1	100	83.081	ENSSLDG00000012642	sf3a1	100	81.818	Seriola_lalandi_dorsalis
ENSCPBG00000007595	SF3A1	97	89.935	ENSSARG00000005960	SF3A1	99	89.412	Sorex_araneus
ENSCPBG00000007595	SF3A1	100	92.240	ENSSPUG00000018863	SF3A1	100	91.740	Sphenodon_punctatus
ENSCPBG00000007595	SF3A1	100	83.460	ENSSPAG00000011856	sf3a1	100	82.323	Stegastes_partitus
ENSCPBG00000007595	SF3A1	100	91.058	ENSSSCG00000010002	SF3A1	100	90.932	Sus_scrofa
ENSCPBG00000007595	SF3A1	96	94.180	ENSTGUG00000010547	SF3A1	100	94.286	Taeniopygia_guttata
ENSCPBG00000007595	SF3A1	100	81.566	ENSTRUG00000006118	sf3a1	100	80.177	Takifugu_rubripes
ENSCPBG00000007595	SF3A1	64	80.970	ENSTNIG00000005713	sf3a1	88	87.037	Tetraodon_nigroviridis
ENSCPBG00000007595	SF3A1	100	84.257	ENSTBEG00000012771	SF3A1	100	84.131	Tupaia_belangeri
ENSCPBG00000007595	SF3A1	100	90.566	ENSTTRG00000001535	SF3A1	100	90.440	Tursiops_truncatus
ENSCPBG00000007595	SF3A1	99	90.228	ENSUAMG00000006750	SF3A1	99	90.102	Ursus_americanus
ENSCPBG00000007595	SF3A1	97	92.068	ENSUMAG00000016665	SF3A1	97	92.288	Ursus_maritimus
ENSCPBG00000007595	SF3A1	100	91.058	ENSVVUG00000003075	SF3A1	100	90.932	Vulpes_vulpes
ENSCPBG00000007595	SF3A1	100	83.899	ENSXETG00000016144	sf3a1	96	88.353	Xenopus_tropicalis
ENSCPBG00000007595	SF3A1	100	82.219	ENSXCOG00000015653	sf3a1	100	80.556	Xiphophorus_couchianus
ENSCPBG00000007595	SF3A1	100	81.967	ENSXMAG00000002753	sf3a1	100	80.682	Xiphophorus_maculatus