EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000007943 (Gene tree)
Gene ID: 101952134
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 15353 bases
Position: chrKK084503.1:25704-41056
Accession: 12651
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000012366	Val_tRNA-synt_C	PF10458.9	8.9e-09	1	1
ENSCPBP00000012403	Val_tRNA-synt_C	PF10458.9	9e-09	1	1
ENSCPBP00000012403	tRNA-synt_1g	PF09334.11	1.2e-11	1	1
ENSCPBP00000012366	tRNA-synt_1g	PF09334.11	1.3e-11	1	1
ENSCPBP00000012366	Anticodon_1	PF08264.13	8.5e-28	1	1
ENSCPBP00000012403	Anticodon_1	PF08264.13	8.7e-28	1	1
ENSCPBP00000012403	tRNA-synt_1	PF00133.22	1.5e-205	1	1
ENSCPBP00000012366	tRNA-synt_1	PF00133.22	1.5e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000014774	VARS-202	2997	-	ENSCPBP00000012403	998 (aa)	-	-
ENSCPBT00000014737	VARS-201	3036	-	ENSCPBP00000012366	1011 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000007943's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000007943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000007943	VARS	94	52.704	ENSCPBG00000021502	VARS2	93	63.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000007943	VARS	96	74.230	ENSG00000204394	VARS	99	73.926	Homo_sapiens
ENSCPBG00000007943	VARS	94	74.948	ENSAPOG00000020921	vars	79	74.948	Acanthochromis_polyacanthus
ENSCPBG00000007943	VARS	94	74.948	ENSAPOG00000020691	vars	79	74.948	Acanthochromis_polyacanthus
ENSCPBG00000007943	VARS	96	74.154	ENSAMEG00000006417	VARS	78	73.652	Ailuropoda_melanoleuca
ENSCPBG00000007943	VARS	96	74.131	ENSACIG00000013752	vars	79	73.631	Amphilophus_citrinellus
ENSCPBG00000007943	VARS	96	74.616	ENSAOCG00000002447	vars	79	74.616	Amphiprion_ocellaris
ENSCPBG00000007943	VARS	96	74.414	ENSAPEG00000010638	vars	78	74.338	Amphiprion_percula
ENSCPBG00000007943	VARS	96	74.407	ENSATEG00000020219	vars	79	73.700	Anabas_testudineus
ENSCPBG00000007943	VARS	81	86.584	ENSACAG00000029133	-	70	86.584	Anolis_carolinensis
ENSCPBG00000007943	VARS	96	74.333	ENSANAG00000015453	VARS	77	74.230	Aotus_nancymaae
ENSCPBG00000007943	VARS	96	74.438	ENSACLG00000025699	vars	74	74.438	Astatotilapia_calliptera
ENSCPBG00000007943	VARS	89	76.542	ENSAMXG00000017716	vars	75	76.600	Astyanax_mexicanus
ENSCPBG00000007943	VARS	96	74.025	ENSBTAG00000005631	VARS	77	74.025	Bos_taurus
ENSCPBG00000007943	VARS	96	73.922	ENSCJAG00000002604	VARS	77	73.819	Callithrix_jacchus
ENSCPBG00000007943	VARS	96	74.127	ENSCAFG00000000636	VARS	78	73.829	Canis_familiaris
ENSCPBG00000007943	VARS	88	76.063	ENSCAFG00020020790	VARS	73	76.063	Canis_lupus_dingo
ENSCPBG00000007943	VARS	96	74.127	ENSCHIG00000011008	VARS	79	72.403	Capra_hircus
ENSCPBG00000007943	VARS	96	73.511	ENSTSYG00000001567	VARS	77	73.614	Carlito_syrichta
ENSCPBG00000007943	VARS	96	74.230	ENSCAPG00000013736	VARS	84	74.025	Cavia_aperea
ENSCPBG00000007943	VARS	96	74.333	ENSCPOG00000000870	VARS	77	74.333	Cavia_porcellus
ENSCPBG00000007943	VARS	96	74.230	ENSCCAG00000035656	VARS	100	62.687	Cebus_capucinus
ENSCPBG00000007943	VARS	96	74.538	ENSCATG00000022394	VARS	100	60.688	Cercocebus_atys
ENSCPBG00000007943	VARS	94	72.211	ENSCLAG00000009470	VARS	79	72.301	Chinchilla_lanigera
ENSCPBG00000007943	VARS	96	74.435	ENSCSAG00000008784	VARS	77	74.333	Chlorocebus_sabaeus
ENSCPBG00000007943	VARS	96	74.538	ENSCANG00000033570	VARS	77	74.435	Colobus_angolensis_palliatus
ENSCPBG00000007943	VARS	96	74.230	ENSCGRG00001005686	Vars	77	74.230	Cricetulus_griseus_chok1gshd
ENSCPBG00000007943	VARS	96	68.924	ENSCGRG00000013352	Vars	65	68.924	Cricetulus_griseus_crigri
ENSCPBG00000007943	VARS	96	74.203	ENSCSEG00000019652	vars	79	74.203	Cynoglossus_semilaevis
ENSCPBG00000007943	VARS	96	75.000	ENSCVAG00000022398	vars	77	75.051	Cyprinodon_variegatus
ENSCPBG00000007943	VARS	96	75.205	ENSDARG00000044575	vars	77	75.410	Danio_rerio
ENSCPBG00000007943	VARS	96	74.025	ENSDORG00000016433	Vars	87	74.025	Dipodomys_ordii
ENSCPBG00000007943	VARS	68	75.949	ENSETEG00000003824	VARS	60	76.460	Echinops_telfairi
ENSCPBG00000007943	VARS	71	63.049	ENSEBUG00000004637	vars	100	63.874	Eptatretus_burgeri
ENSCPBG00000007943	VARS	66	72.852	ENSEBUG00000007086	vars	84	63.955	Eptatretus_burgeri
ENSCPBG00000007943	VARS	96	74.846	ENSEASG00005015673	VARS	77	74.846	Equus_asinus_asinus
ENSCPBG00000007943	VARS	96	74.974	ENSECAG00000014620	VARS	77	74.974	Equus_caballus
ENSCPBG00000007943	VARS	75	85.526	ENSEEUG00000004116	VARS	63	85.526	Erinaceus_europaeus
ENSCPBG00000007943	VARS	96	74.233	ENSELUG00000006550	vars	75	74.233	Esox_lucius
ENSCPBG00000007943	VARS	96	74.435	ENSFCAG00000004510	VARS	78	73.931	Felis_catus
ENSCPBG00000007943	VARS	84	80.824	ENSFDAG00000011401	VARS	81	80.824	Fukomys_damarensis
ENSCPBG00000007943	VARS	96	74.744	ENSFHEG00000010672	vars	79	74.203	Fundulus_heteroclitus
ENSCPBG00000007943	VARS	96	74.335	ENSGMOG00000014908	vars	80	73.732	Gadus_morhua
ENSCPBG00000007943	VARS	96	74.924	ENSGAFG00000021630	vars	77	74.924	Gambusia_affinis
ENSCPBG00000007943	VARS	96	73.873	ENSGACG00000009601	vars	80	73.873	Gasterosteus_aculeatus
ENSCPBG00000007943	VARS	96	74.538	ENSGGOG00000011364	VARS	77	74.435	Gorilla_gorilla
ENSCPBG00000007943	VARS	96	74.438	ENSHBUG00000017151	vars	74	74.438	Haplochromis_burtoni
ENSCPBG00000007943	VARS	96	73.101	ENSHGLG00000011646	VARS	78	72.718	Heterocephalus_glaber_female
ENSCPBG00000007943	VARS	96	67.668	ENSHGLG00100018062	VARS	86	65.828	Heterocephalus_glaber_male
ENSCPBG00000007943	VARS	96	75.129	ENSHCOG00000012198	vars	80	75.284	Hippocampus_comes
ENSCPBG00000007943	VARS	96	74.923	ENSIPUG00000005218	vars	79	74.540	Ictalurus_punctatus
ENSCPBG00000007943	VARS	96	74.025	ENSSTOG00000013112	VARS	77	73.922	Ictidomys_tridecemlineatus
ENSCPBG00000007943	VARS	96	60.393	ENSJJAG00000015343	-	79	60.600	Jaculus_jaculus
ENSCPBG00000007943	VARS	96	73.176	ENSJJAG00000019749	-	77	73.073	Jaculus_jaculus
ENSCPBG00000007943	VARS	96	73.926	ENSKMAG00000009455	vars	78	74.101	Kryptolebias_marmoratus
ENSCPBG00000007943	VARS	96	74.744	ENSLBEG00000010341	vars	79	74.359	Labrus_bergylta
ENSCPBG00000007943	VARS	89	71.133	ENSLACG00000015232	VARS	75	71.133	Latimeria_chalumnae
ENSCPBG00000007943	VARS	96	77.287	ENSLOCG00000004240	vars	77	77.390	Lepisosteus_oculatus
ENSCPBG00000007943	VARS	96	74.333	ENSLAFG00000023090	VARS	77	74.333	Loxodonta_africana
ENSCPBG00000007943	VARS	96	74.538	ENSMFAG00000001032	VARS	77	74.435	Macaca_fascicularis
ENSCPBG00000007943	VARS	96	74.538	ENSMMUG00000006828	VARS	77	74.435	Macaca_mulatta
ENSCPBG00000007943	VARS	96	74.435	ENSMNEG00000042072	VARS	77	74.333	Macaca_nemestrina
ENSCPBG00000007943	VARS	96	74.538	ENSMLEG00000039307	VARS	77	74.435	Mandrillus_leucophaeus
ENSCPBG00000007943	VARS	96	73.846	ENSMAMG00000003949	vars	79	73.998	Mastacembelus_armatus
ENSCPBG00000007943	VARS	96	75.052	ENSMZEG00005018327	vars	80	75.052	Maylandia_zebra
ENSCPBG00000007943	VARS	96	74.846	ENSMAUG00000006715	Vars	77	74.846	Mesocricetus_auratus
ENSCPBG00000007943	VARS	96	74.333	ENSMICG00000003548	VARS	100	62.189	Microcebus_murinus
ENSCPBG00000007943	VARS	96	74.538	ENSMOCG00000015404	Vars	79	74.435	Microtus_ochrogaster
ENSCPBG00000007943	VARS	96	74.693	ENSMMOG00000015801	vars	80	74.693	Mola_mola
ENSCPBG00000007943	VARS	96	73.922	ENSMODG00000015204	-	77	73.922	Monodelphis_domestica
ENSCPBG00000007943	VARS	96	74.150	ENSMALG00000022532	vars	79	73.394	Monopterus_albus
ENSCPBG00000007943	VARS	96	74.538	MGP_CAROLIEiJ_G0021491	Vars	77	74.435	Mus_caroli
ENSCPBG00000007943	VARS	96	74.435	ENSMUSG00000007029	Vars	77	74.333	Mus_musculus
ENSCPBG00000007943	VARS	96	74.333	MGP_PahariEiJ_G0020486	Vars	77	74.333	Mus_pahari
ENSCPBG00000007943	VARS	96	74.538	MGP_SPRETEiJ_G0022396	Vars	77	74.435	Mus_spretus
ENSCPBG00000007943	VARS	96	74.230	ENSMPUG00000010821	VARS	78	73.931	Mustela_putorius_furo
ENSCPBG00000007943	VARS	70	81.779	ENSMLUG00000013126	VARS	71	81.923	Myotis_lucifugus
ENSCPBG00000007943	VARS	96	74.846	ENSNGAG00000012151	Vars	77	74.743	Nannospalax_galili
ENSCPBG00000007943	VARS	97	73.306	ENSNBRG00000020520	vars	80	73.306	Neolamprologus_brichardi
ENSCPBG00000007943	VARS	96	74.025	ENSNLEG00000006351	VARS	100	59.466	Nomascus_leucogenys
ENSCPBG00000007943	VARS	96	74.333	ENSMEUG00000011378	VARS	77	74.333	Notamacropus_eugenii
ENSCPBG00000007943	VARS	96	74.846	ENSOPRG00000003607	VARS	77	74.949	Ochotona_princeps
ENSCPBG00000007943	VARS	96	73.614	ENSODEG00000017681	VARS	77	73.744	Octodon_degus
ENSCPBG00000007943	VARS	96	74.233	ENSONIG00000013064	vars	85	74.233	Oreochromis_niloticus
ENSCPBG00000007943	VARS	69	82.609	ENSOANG00000005400	VARS	71	82.878	Ornithorhynchus_anatinus
ENSCPBG00000007943	VARS	96	75.257	ENSOCUG00000022463	VARS	77	75.154	Oryctolagus_cuniculus
ENSCPBG00000007943	VARS	96	74.873	ENSORLG00000013063	vars	77	74.848	Oryzias_latipes
ENSCPBG00000007943	VARS	96	74.771	ENSORLG00020003504	vars	77	74.771	Oryzias_latipes_hni
ENSCPBG00000007943	VARS	96	74.873	ENSORLG00015009001	vars	77	74.873	Oryzias_latipes_hsok
ENSCPBG00000007943	VARS	96	74.669	ENSOMEG00000015016	vars	77	74.669	Oryzias_melastigma
ENSCPBG00000007943	VARS	96	73.511	ENSOGAG00000007515	VARS	77	73.511	Otolemur_garnettii
ENSCPBG00000007943	VARS	96	74.538	ENSPPAG00000034012	VARS	77	74.435	Pan_paniscus
ENSCPBG00000007943	VARS	96	74.538	ENSPPRG00000014855	VARS	78	74.033	Panthera_pardus
ENSCPBG00000007943	VARS	86	76.686	ENSPTIG00000010462	VARS	77	76.564	Panthera_tigris_altaica
ENSCPBG00000007943	VARS	96	74.435	ENSPTRG00000017985	VARS	77	74.333	Pan_troglodytes
ENSCPBG00000007943	VARS	95	73.542	ENSPANG00000014565	VARS	76	73.438	Papio_anubis
ENSCPBG00000007943	VARS	96	73.926	ENSPKIG00000016304	vars	81	73.776	Paramormyrops_kingsleyae
ENSCPBG00000007943	VARS	96	74.590	ENSPMGG00000023909	vars	79	74.743	Periophthalmus_magnuspinnatus
ENSCPBG00000007943	VARS	96	74.333	ENSPEMG00000006639	Vars	77	74.435	Peromyscus_maniculatus_bairdii
ENSCPBG00000007943	VARS	96	73.717	ENSPCIG00000018553	VARS	77	73.717	Phascolarctos_cinereus
ENSCPBG00000007943	VARS	96	75.025	ENSPFOG00000015690	vars	77	75.025	Poecilia_formosa
ENSCPBG00000007943	VARS	96	75.025	ENSPLAG00000009590	vars	79	74.720	Poecilia_latipinna
ENSCPBG00000007943	VARS	96	75.025	ENSPMEG00000004708	vars	77	75.025	Poecilia_mexicana
ENSCPBG00000007943	VARS	96	75.437	ENSPREG00000013264	vars	80	75.437	Poecilia_reticulata
ENSCPBG00000007943	VARS	96	72.382	ENSPPYG00000016460	VARS	77	72.279	Pongo_abelii
ENSCPBG00000007943	VARS	78	76.957	ENSPCAG00000013565	VARS	62	76.957	Procavia_capensis
ENSCPBG00000007943	VARS	96	74.538	ENSPCOG00000010942	VARS	77	74.435	Propithecus_coquereli
ENSCPBG00000007943	VARS	96	73.511	ENSPVAG00000012403	VARS	77	73.511	Pteropus_vampyrus
ENSCPBG00000007943	VARS	96	74.438	ENSPNYG00000022511	vars	77	74.438	Pundamilia_nyererei
ENSCPBG00000007943	VARS	96	75.464	ENSPNAG00000020962	vars	83	75.464	Pygocentrus_nattereri
ENSCPBG00000007943	VARS	96	74.230	ENSRNOG00000000867	Vars	77	74.025	Rattus_norvegicus
ENSCPBG00000007943	VARS	96	74.435	ENSRBIG00000041669	VARS	100	60.688	Rhinopithecus_bieti
ENSCPBG00000007943	VARS	96	74.435	ENSRROG00000045490	VARS	77	74.333	Rhinopithecus_roxellana
ENSCPBG00000007943	VARS	96	74.025	ENSSBOG00000035402	VARS	77	73.922	Saimiri_boliviensis_boliviensis
ENSCPBG00000007943	VARS	96	74.230	ENSSHAG00000006937	VARS	77	74.230	Sarcophilus_harrisii
ENSCPBG00000007943	VARS	97	73.817	ENSSFOG00015014272	vars	82	74.438	Scleropages_formosus
ENSCPBG00000007943	VARS	96	73.824	ENSSMAG00000009596	vars	76	73.824	Scophthalmus_maximus
ENSCPBG00000007943	VARS	96	74.540	ENSSDUG00000014177	vars	77	74.540	Seriola_dumerili
ENSCPBG00000007943	VARS	96	74.540	ENSSLDG00000025316	vars	77	74.540	Seriola_lalandi_dorsalis
ENSCPBG00000007943	VARS	96	74.949	ENSSPAG00000017068	vars	79	74.897	Stegastes_partitus
ENSCPBG00000007943	VARS	96	73.819	ENSSSCG00000038950	VARS	77	73.819	Sus_scrofa
ENSCPBG00000007943	VARS	74	77.748	ENSTRUG00000012307	vars	70	77.463	Takifugu_rubripes
ENSCPBG00000007943	VARS	96	74.540	ENSTNIG00000008011	vars	81	74.138	Tetraodon_nigroviridis
ENSCPBG00000007943	VARS	96	69.065	ENSTTRG00000014128	VARS	77	69.065	Tursiops_truncatus
ENSCPBG00000007943	VARS	96	72.962	ENSUAMG00000010424	VARS	76	72.962	Ursus_americanus
ENSCPBG00000007943	VARS	87	83.776	ENSUMAG00000013486	VARS	75	83.188	Ursus_maritimus
ENSCPBG00000007943	VARS	96	74.359	ENSVVUG00000021323	VARS	81	74.359	Vulpes_vulpes
ENSCPBG00000007943	VARS	96	69.777	ENSXETG00000024076	vars	79	69.777	Xenopus_tropicalis
ENSCPBG00000007943	VARS	96	74.618	ENSXCOG00000019172	vars	79	74.618	Xiphophorus_couchianus
ENSCPBG00000007943	VARS	96	74.924	ENSXMAG00000010927	vars	77	74.924	Xiphophorus_maculatus