EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000007959 (Gene tree)
Gene ID: 101941296
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 11982 bases
Position: chrKK082960.1:414599-426580
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000010367	RNA_pol_3_Rpc31	PF11705.8	3.3e-37	1	1
ENSCPBP00000010353	RNA_pol_3_Rpc31	PF11705.8	9.4e-29	1	1
ENSCPBP00000010365	RNA_pol_3_Rpc31	PF11705.8	9.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000012440	-	2822	-	ENSCPBP00000010365	247 (aa)	-	-
ENSCPBT00000012428	-	1046	-	ENSCPBP00000010353	247 (aa)	-	-
ENSCPBT00000012443	-	839	-	ENSCPBP00000010367	217 (aa)	XP_005293693	UPI0003890BA8

Gene Model

Click here to download ENSCPBG00000007959's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03020	RNA polymerase	KEGG
cpic04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000007959's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000007959	-	98	55.708	ENSAMXG00000031351	polr3gla	96	54.762	Astyanax_mexicanus
ENSCPBG00000007959	-	94	66.019	ENSAMXG00000001802	polr3glb	95	67.633	Astyanax_mexicanus
ENSCPBG00000007959	-	100	59.009	ENSDARG00000012044	polr3gla	95	59.242	Danio_rerio
ENSCPBG00000007959	-	97	65.403	ENSDARG00000013734	polr3glb	97	63.768	Danio_rerio
ENSCPBG00000007959	-	94	69.302	ENSELUG00000008311	polr3glb	95	67.442	Esox_lucius
ENSCPBG00000007959	-	94	63.768	ENSELUG00000013880	polr3gla	95	63.462	Esox_lucius
ENSCPBG00000007959	-	95	56.604	ENSIPUG00000018691	polr3gla	95	55.714	Ictalurus_punctatus
ENSCPBG00000007959	-	100	67.742	ENSIPUG00000003803	polr3gl	95	66.990	Ictalurus_punctatus
ENSCPBG00000007959	-	94	80.000	ENSLACG00000013217	-	94	74.272	Latimeria_chalumnae
ENSCPBG00000007959	-	94	76.098	ENSLOCG00000008195	polr3glb	94	75.728	Lepisosteus_oculatus
ENSCPBG00000007959	-	94	95.122	ENSPSIG00000010726	-	100	94.931	Pelodiscus_sinensis
ENSCPBG00000007959	-	94	66.990	ENSPNAG00000000732	polr3glb	95	68.599	Pygocentrus_nattereri