EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000008041 (Gene tree)
Gene ID: 101943566
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 8712 bases
Position: chrKK082960.1:749262-757973
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000010469	RRM_1	PF00076.22	4e-39	1	2
ENSCPBP00000010469	RRM_1	PF00076.22	4e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000012564	SF3B4-201	1723	XM_005293645	ENSCPBP00000010469	418 (aa)	XP_005293702	UPI000388A11E

Gene Model

Click here to download ENSCPBG00000008041's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000008041's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000008041	SF3B4	50	35.023	ENSCPBG00000017755	-	82	35.407
ENSCPBG00000008041	SF3B4	80	41.530	ENSCPBG00000001038	PABPC4	57	41.530
ENSCPBG00000008041	SF3B4	67	38.798	ENSCPBG00000005782	PABPC1	57	38.798

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000008041	SF3B4	91	90.625	ENSG00000143368	SF3B4	99	97.354	Homo_sapiens
ENSCPBG00000008041	SF3B4	55	98.253	ENSAPOG00000017647	sf3b4	54	100.000	Acanthochromis_polyacanthus
ENSCPBG00000008041	SF3B4	91	90.885	ENSAMEG00000010073	SF3B4	99	86.085	Ailuropoda_melanoleuca
ENSCPBG00000008041	SF3B4	54	98.678	ENSAOCG00000019801	sf3b4	54	100.000	Amphiprion_ocellaris
ENSCPBG00000008041	SF3B4	54	98.678	ENSAPEG00000010365	sf3b4	54	100.000	Amphiprion_percula
ENSCPBG00000008041	SF3B4	55	98.253	ENSATEG00000012844	sf3b4	53	100.000	Anabas_testudineus
ENSCPBG00000008041	SF3B4	91	90.625	ENSANAG00000031025	SF3B4	99	85.849	Aotus_nancymaae
ENSCPBG00000008041	SF3B4	57	95.781	ENSACLG00000014260	sf3b4	53	100.000	Astatotilapia_calliptera
ENSCPBG00000008041	SF3B4	55	98.253	ENSAMXG00000008282	sf3b4	53	100.000	Astyanax_mexicanus
ENSCPBG00000008041	SF3B4	84	89.106	ENSBTAG00000012793	-	53	95.392	Bos_taurus
ENSCPBG00000008041	SF3B4	91	90.885	ENSBTAG00000012495	SF3B4	99	86.085	Bos_taurus
ENSCPBG00000008041	SF3B4	90	70.787	ENSCJAG00000042351	SF3B4	99	70.787	Callithrix_jacchus
ENSCPBG00000008041	SF3B4	91	90.365	ENSCAFG00000011617	SF3B4	99	85.849	Canis_familiaris
ENSCPBG00000008041	SF3B4	91	90.365	ENSCAFG00020019775	SF3B4	99	85.849	Canis_lupus_dingo
ENSCPBG00000008041	SF3B4	97	55.854	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSCPBG00000008041	SF3B4	91	90.885	ENSCHIG00000025663	-	99	86.085	Capra_hircus
ENSCPBG00000008041	SF3B4	91	90.625	ENSTSYG00000009295	SF3B4	99	85.849	Carlito_syrichta
ENSCPBG00000008041	SF3B4	89	76.308	ENSCAPG00000006451	SF3B4	66	100.000	Cavia_aperea
ENSCPBG00000008041	SF3B4	91	90.625	ENSCPOG00000008267	SF3B4	99	85.849	Cavia_porcellus
ENSCPBG00000008041	SF3B4	94	80.742	ENSCCAG00000021751	-	59	95.817	Cebus_capucinus
ENSCPBG00000008041	SF3B4	74	82.484	ENSCCAG00000019823	-	94	74.687	Cebus_capucinus
ENSCPBG00000008041	SF3B4	91	90.625	ENSCATG00000033114	SF3B4	99	85.849	Cercocebus_atys
ENSCPBG00000008041	SF3B4	91	90.625	ENSCLAG00000015851	SF3B4	99	85.849	Chinchilla_lanigera
ENSCPBG00000008041	SF3B4	91	90.625	ENSCSAG00000018129	SF3B4	99	85.849	Chlorocebus_sabaeus
ENSCPBG00000008041	SF3B4	54	88.393	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSCPBG00000008041	SF3B4	50	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSCPBG00000008041	SF3B4	91	90.625	ENSCANG00000035579	SF3B4	99	85.849	Colobus_angolensis_palliatus
ENSCPBG00000008041	SF3B4	91	90.625	ENSCGRG00001003590	Sf3b4	99	85.849	Cricetulus_griseus_chok1gshd
ENSCPBG00000008041	SF3B4	91	90.625	ENSCGRG00000016914	Sf3b4	99	85.849	Cricetulus_griseus_crigri
ENSCPBG00000008041	SF3B4	64	87.778	ENSCVAG00000005536	sf3b4	55	100.000	Cyprinodon_variegatus
ENSCPBG00000008041	SF3B4	55	98.261	ENSDARG00000018574	sf3b4	54	100.000	Danio_rerio
ENSCPBG00000008041	SF3B4	89	87.500	ENSDNOG00000048908	-	99	82.933	Dasypus_novemcinctus
ENSCPBG00000008041	SF3B4	97	73.123	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSCPBG00000008041	SF3B4	91	90.885	ENSDORG00000016366	Sf3b4	99	86.085	Dipodomys_ordii
ENSCPBG00000008041	SF3B4	75	83.750	ENSETEG00000008963	SF3B4	62	87.833	Echinops_telfairi
ENSCPBG00000008041	SF3B4	91	90.885	ENSEASG00005001477	SF3B4	99	86.085	Equus_asinus_asinus
ENSCPBG00000008041	SF3B4	91	90.885	ENSECAG00000024737	SF3B4	99	86.085	Equus_caballus
ENSCPBG00000008041	SF3B4	55	98.690	ENSELUG00000012876	sf3b4	53	100.000	Esox_lucius
ENSCPBG00000008041	SF3B4	91	90.885	ENSFCAG00000010106	SF3B4	99	86.085	Felis_catus
ENSCPBG00000008041	SF3B4	91	90.625	ENSFDAG00000009286	SF3B4	99	85.849	Fukomys_damarensis
ENSCPBG00000008041	SF3B4	100	97.136	ENSGALG00000013352	SF3B4	100	97.136	Gallus_gallus
ENSCPBG00000008041	SF3B4	63	93.208	ENSGAFG00000010181	sf3b4	54	100.000	Gambusia_affinis
ENSCPBG00000008041	SF3B4	54	98.678	ENSGACG00000003819	sf3b4	54	100.000	Gasterosteus_aculeatus
ENSCPBG00000008041	SF3B4	100	99.761	ENSGAGG00000025055	SF3B4	88	99.761	Gopherus_agassizii
ENSCPBG00000008041	SF3B4	100	68.322	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSCPBG00000008041	SF3B4	91	90.625	ENSGGOG00000004761	SF3B4	99	85.849	Gorilla_gorilla
ENSCPBG00000008041	SF3B4	57	95.781	ENSHBUG00000002028	sf3b4	53	100.000	Haplochromis_burtoni
ENSCPBG00000008041	SF3B4	91	90.625	ENSHGLG00000012360	SF3B4	99	85.849	Heterocephalus_glaber_female
ENSCPBG00000008041	SF3B4	91	85.827	ENSHGLG00100008533	SF3B4	58	97.119	Heterocephalus_glaber_male
ENSCPBG00000008041	SF3B4	54	97.797	ENSHCOG00000003014	sf3b4	54	99.533	Hippocampus_comes
ENSCPBG00000008041	SF3B4	55	98.261	ENSIPUG00000012242	Sf3b4	54	100.000	Ictalurus_punctatus
ENSCPBG00000008041	SF3B4	91	90.885	ENSSTOG00000000684	-	99	86.085	Ictidomys_tridecemlineatus
ENSCPBG00000008041	SF3B4	75	71.491	ENSJJAG00000022500	Sf3b4	69	74.269	Jaculus_jaculus
ENSCPBG00000008041	SF3B4	57	96.203	ENSKMAG00000008154	sf3b4	54	100.000	Kryptolebias_marmoratus
ENSCPBG00000008041	SF3B4	56	97.845	ENSLBEG00000026818	sf3b4	54	100.000	Labrus_bergylta
ENSCPBG00000008041	SF3B4	58	97.531	ENSLACG00000004436	SF3B4	67	97.531	Latimeria_chalumnae
ENSCPBG00000008041	SF3B4	58	97.531	ENSLOCG00000009048	sf3b4	58	97.531	Lepisosteus_oculatus
ENSCPBG00000008041	SF3B4	91	91.429	ENSLAFG00000008531	SF3B4	62	96.578	Loxodonta_africana
ENSCPBG00000008041	SF3B4	91	90.625	ENSMFAG00000042395	SF3B4	99	85.849	Macaca_fascicularis
ENSCPBG00000008041	SF3B4	91	68.063	ENSMFAG00000039067	-	53	80.000	Macaca_fascicularis
ENSCPBG00000008041	SF3B4	91	90.625	ENSMMUG00000007256	SF3B4	99	85.849	Macaca_mulatta
ENSCPBG00000008041	SF3B4	91	67.539	ENSMNEG00000031526	-	53	79.500	Macaca_nemestrina
ENSCPBG00000008041	SF3B4	91	90.625	ENSMNEG00000031839	SF3B4	99	85.849	Macaca_nemestrina
ENSCPBG00000008041	SF3B4	91	90.625	ENSMLEG00000038667	SF3B4	99	85.849	Mandrillus_leucophaeus
ENSCPBG00000008041	SF3B4	57	96.203	ENSMAMG00000014692	sf3b4	54	100.000	Mastacembelus_armatus
ENSCPBG00000008041	SF3B4	57	95.781	ENSMZEG00005026741	sf3b4	53	100.000	Maylandia_zebra
ENSCPBG00000008041	SF3B4	100	96.659	ENSMGAG00000000653	SF3B4	100	96.659	Meleagris_gallopavo
ENSCPBG00000008041	SF3B4	91	90.625	ENSMAUG00000015266	Sf3b4	99	85.849	Mesocricetus_auratus
ENSCPBG00000008041	SF3B4	91	90.885	ENSMICG00000044961	SF3B4	99	86.085	Microcebus_murinus
ENSCPBG00000008041	SF3B4	92	80.206	ENSMOCG00000014155	-	99	80.622	Microtus_ochrogaster
ENSCPBG00000008041	SF3B4	91	90.625	ENSMOCG00000013658	-	99	85.849	Microtus_ochrogaster
ENSCPBG00000008041	SF3B4	55	99.127	ENSMMOG00000018032	sf3b4	55	100.000	Mola_mola
ENSCPBG00000008041	SF3B4	91	91.146	ENSMODG00000018767	SF3B4	99	86.557	Monodelphis_domestica
ENSCPBG00000008041	SF3B4	54	98.238	ENSMALG00000006174	sf3b4	53	100.000	Monopterus_albus
ENSCPBG00000008041	SF3B4	91	90.365	MGP_CAROLIEiJ_G0025365	Sf3b4	57	97.119	Mus_caroli
ENSCPBG00000008041	SF3B4	91	90.625	ENSMUSG00000068856	Sf3b4	99	85.849	Mus_musculus
ENSCPBG00000008041	SF3B4	91	90.625	MGP_PahariEiJ_G0026809	Sf3b4	99	85.849	Mus_pahari
ENSCPBG00000008041	SF3B4	91	90.625	MGP_SPRETEiJ_G0026309	Sf3b4	99	85.849	Mus_spretus
ENSCPBG00000008041	SF3B4	91	90.885	ENSMPUG00000005563	SF3B4	99	86.085	Mustela_putorius_furo
ENSCPBG00000008041	SF3B4	91	90.885	ENSMLUG00000010789	SF3B4	99	86.085	Myotis_lucifugus
ENSCPBG00000008041	SF3B4	91	91.406	ENSNGAG00000016337	Sf3b4	99	83.726	Nannospalax_galili
ENSCPBG00000008041	SF3B4	57	96.203	ENSNBRG00000013865	sf3b4	53	100.000	Neolamprologus_brichardi
ENSCPBG00000008041	SF3B4	100	70.213	ENSNLEG00000000537	-	54	90.187	Nomascus_leucogenys
ENSCPBG00000008041	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSCPBG00000008041	SF3B4	55	94.298	ENSOPRG00000010808	SF3B4	50	95.327	Ochotona_princeps
ENSCPBG00000008041	SF3B4	91	63.896	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSCPBG00000008041	SF3B4	74	79.811	ENSODEG00000003597	-	65	81.818	Octodon_degus
ENSCPBG00000008041	SF3B4	57	95.781	ENSONIG00000002730	sf3b4	53	100.000	Oreochromis_niloticus
ENSCPBG00000008041	SF3B4	99	56.452	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSCPBG00000008041	SF3B4	91	90.885	ENSOCUG00000004614	SF3B4	99	86.085	Oryctolagus_cuniculus
ENSCPBG00000008041	SF3B4	56	97.845	ENSORLG00000003062	sf3b4	55	100.000	Oryzias_latipes
ENSCPBG00000008041	SF3B4	56	97.845	ENSORLG00020000687	sf3b4	54	100.000	Oryzias_latipes_hni
ENSCPBG00000008041	SF3B4	56	97.845	ENSORLG00015010989	sf3b4	54	100.000	Oryzias_latipes_hsok
ENSCPBG00000008041	SF3B4	56	97.845	ENSOMEG00000013694	sf3b4	54	100.000	Oryzias_melastigma
ENSCPBG00000008041	SF3B4	91	90.885	ENSOGAG00000006265	SF3B4	99	86.085	Otolemur_garnettii
ENSCPBG00000008041	SF3B4	86	70.248	ENSOARG00000007368	-	51	83.333	Ovis_aries
ENSCPBG00000008041	SF3B4	91	90.885	ENSOARG00000020718	-	99	86.085	Ovis_aries
ENSCPBG00000008041	SF3B4	100	74.468	ENSPPAG00000030024	-	58	87.029	Pan_paniscus
ENSCPBG00000008041	SF3B4	91	90.625	ENSPPAG00000040904	SF3B4	99	85.849	Pan_paniscus
ENSCPBG00000008041	SF3B4	91	90.885	ENSPPRG00000007384	SF3B4	99	86.085	Panthera_pardus
ENSCPBG00000008041	SF3B4	91	90.885	ENSPTIG00000014530	SF3B4	99	85.849	Panthera_tigris_altaica
ENSCPBG00000008041	SF3B4	91	90.625	ENSPTRG00000001243	SF3B4	99	85.849	Pan_troglodytes
ENSCPBG00000008041	SF3B4	100	73.508	ENSPTRG00000049727	-	60	87.448	Pan_troglodytes
ENSCPBG00000008041	SF3B4	91	90.625	ENSPANG00000005126	SF3B4	99	85.849	Papio_anubis
ENSCPBG00000008041	SF3B4	56	97.845	ENSPKIG00000020669	sf3b4	57	100.000	Paramormyrops_kingsleyae
ENSCPBG00000008041	SF3B4	69	84.669	ENSPSIG00000009565	SF3B4	92	84.669	Pelodiscus_sinensis
ENSCPBG00000008041	SF3B4	91	90.625	ENSPEMG00000017568	Sf3b4	99	85.849	Peromyscus_maniculatus_bairdii
ENSCPBG00000008041	SF3B4	90	73.575	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSCPBG00000008041	SF3B4	91	91.146	ENSPCIG00000008765	SF3B4	99	86.557	Phascolarctos_cinereus
ENSCPBG00000008041	SF3B4	65	89.706	ENSPFOG00000005754	sf3b4	54	100.000	Poecilia_formosa
ENSCPBG00000008041	SF3B4	65	89.706	ENSPLAG00000001401	sf3b4	59	100.000	Poecilia_latipinna
ENSCPBG00000008041	SF3B4	65	91.852	ENSPREG00000011076	sf3b4	53	100.000	Poecilia_reticulata
ENSCPBG00000008041	SF3B4	50	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSCPBG00000008041	SF3B4	91	90.885	ENSPCOG00000015399	SF3B4	99	86.085	Propithecus_coquereli
ENSCPBG00000008041	SF3B4	91	90.885	ENSPVAG00000014171	SF3B4	99	86.085	Pteropus_vampyrus
ENSCPBG00000008041	SF3B4	57	95.781	ENSPNYG00000012700	sf3b4	53	100.000	Pundamilia_nyererei
ENSCPBG00000008041	SF3B4	55	98.253	ENSPNAG00000000686	sf3b4	55	100.000	Pygocentrus_nattereri
ENSCPBG00000008041	SF3B4	91	90.625	ENSRNOG00000021181	Sf3b4	99	85.849	Rattus_norvegicus
ENSCPBG00000008041	SF3B4	91	90.625	ENSRBIG00000043392	SF3B4	99	85.849	Rhinopithecus_bieti
ENSCPBG00000008041	SF3B4	92	65.385	ENSRROG00000028213	-	52	75.122	Rhinopithecus_roxellana
ENSCPBG00000008041	SF3B4	91	90.625	ENSRROG00000029366	SF3B4	99	85.849	Rhinopithecus_roxellana
ENSCPBG00000008041	SF3B4	91	90.365	ENSSBOG00000012310	-	99	85.613	Saimiri_boliviensis_boliviensis
ENSCPBG00000008041	SF3B4	91	88.281	ENSSHAG00000004043	SF3B4	99	84.777	Sarcophilus_harrisii
ENSCPBG00000008041	SF3B4	57	97.046	ENSSFOG00015008864	sf3b4	53	100.000	Scleropages_formosus
ENSCPBG00000008041	SF3B4	54	99.115	ENSSMAG00000006837	sf3b4	54	100.000	Scophthalmus_maximus
ENSCPBG00000008041	SF3B4	55	98.261	ENSSDUG00000012064	sf3b4	53	100.000	Seriola_dumerili
ENSCPBG00000008041	SF3B4	55	98.261	ENSSLDG00000014226	sf3b4	53	100.000	Seriola_lalandi_dorsalis
ENSCPBG00000008041	SF3B4	55	98.261	ENSSPAG00000019219	sf3b4	53	100.000	Stegastes_partitus
ENSCPBG00000008041	SF3B4	86	58.217	ENSSSCG00000039440	-	51	64.953	Sus_scrofa
ENSCPBG00000008041	SF3B4	91	91.667	ENSSSCG00000006665	-	99	83.726	Sus_scrofa
ENSCPBG00000008041	SF3B4	57	97.890	ENSTGUG00000004470	SF3B4	84	100.000	Taeniopygia_guttata
ENSCPBG00000008041	SF3B4	54	97.357	ENSTRUG00000004516	sf3b4	54	100.000	Takifugu_rubripes
ENSCPBG00000008041	SF3B4	55	97.817	ENSTNIG00000009156	sf3b4	55	100.000	Tetraodon_nigroviridis
ENSCPBG00000008041	SF3B4	91	90.885	ENSTTRG00000005217	SF3B4	99	86.085	Tursiops_truncatus
ENSCPBG00000008041	SF3B4	91	90.885	ENSUAMG00000022468	SF3B4	99	86.085	Ursus_americanus
ENSCPBG00000008041	SF3B4	93	90.380	ENSUMAG00000003802	SF3B4	99	83.491	Ursus_maritimus
ENSCPBG00000008041	SF3B4	88	90.591	ENSVPAG00000008152	SF3B4	99	85.680	Vicugna_pacos
ENSCPBG00000008041	SF3B4	75	90.596	ENSVVUG00000007732	-	100	83.055	Vulpes_vulpes
ENSCPBG00000008041	SF3B4	55	97.826	ENSXCOG00000019895	sf3b4	55	100.000	Xiphophorus_couchianus
ENSCPBG00000008041	SF3B4	55	97.826	ENSXMAG00000003772	sf3b4	55	100.000	Xiphophorus_maculatus