EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000009567 (Gene tree)
Gene ID: 101946358
Gene Symbol: APEX1
Alias: APE|APE-1|APEN|APEX|APX|HAP1|REF-1|REF1
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 4993 bases
Position: chrKK083147.1:609546-614538
Accession: 587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000012703	Exo_endo_phos	PF03372.23	2.1e-21	1	1
ENSCPBP00000012706	Exo_endo_phos	PF03372.23	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000015112	APEX1-202	2411	-	ENSCPBP00000012706	318 (aa)	XP_005284279	UPI000389121E
ENSCPBT00000015110	APEX1-201	2626	-	ENSCPBP00000012703	318 (aa)	XP_005284279	UPI000389121E

Gene Model

Click here to download ENSCPBG00000009567's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000009567's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000009567	APEX1	80	30.921	ENSCPBG00000016631	APEX2	62	30.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000009567	APEX1	100	72.100	ENSG00000100823	APEX1	100	72.100	Homo_sapiens
ENSCPBG00000009567	APEX1	87	72.662	ENSAPOG00000017002	apex1	99	66.772	Acanthochromis_polyacanthus
ENSCPBG00000009567	APEX1	100	70.533	ENSAMEG00000005418	APEX1	100	70.533	Ailuropoda_melanoleuca
ENSCPBG00000009567	APEX1	87	75.812	ENSACIG00000010653	apex1	96	75.265	Amphilophus_citrinellus
ENSCPBG00000009567	APEX1	87	73.022	ENSAOCG00000009649	apex1	99	67.722	Amphiprion_ocellaris
ENSCPBG00000009567	APEX1	87	73.022	ENSAPEG00000021453	apex1	99	67.722	Amphiprion_percula
ENSCPBG00000009567	APEX1	86	75.547	ENSATEG00000002883	apex1	97	70.159	Anabas_testudineus
ENSCPBG00000009567	APEX1	100	76.489	ENSACAG00000008099	APEX1	100	76.489	Anolis_carolinensis
ENSCPBG00000009567	APEX1	80	30.719	ENSACAG00000011201	APEX2	59	31.699	Anolis_carolinensis
ENSCPBG00000009567	APEX1	100	72.100	ENSANAG00000030117	APEX1	100	72.100	Aotus_nancymaae
ENSCPBG00000009567	APEX1	86	76.727	ENSACLG00000018441	apex1	99	71.203	Astatotilapia_calliptera
ENSCPBG00000009567	APEX1	100	71.562	ENSAMXG00000034699	apex1	100	71.562	Astyanax_mexicanus
ENSCPBG00000009567	APEX1	100	71.787	ENSBTAG00000002745	APEX1	100	71.787	Bos_taurus
ENSCPBG00000009567	APEX1	80	48.235	WBGene00001372	exo-3	88	48.235	Caenorhabditis_elegans
ENSCPBG00000009567	APEX1	100	72.100	ENSCJAG00000009726	APEX1	100	72.100	Callithrix_jacchus
ENSCPBG00000009567	APEX1	100	70.846	ENSCAFG00000032033	APEX1	100	70.846	Canis_familiaris
ENSCPBG00000009567	APEX1	100	70.846	ENSCAFG00020014377	-	100	70.846	Canis_lupus_dingo
ENSCPBG00000009567	APEX1	54	62.428	ENSCAFG00020023002	-	96	62.428	Canis_lupus_dingo
ENSCPBG00000009567	APEX1	100	71.787	ENSCHIG00000007298	-	100	71.787	Capra_hircus
ENSCPBG00000009567	APEX1	94	57.333	ENSCHIG00000014537	-	95	57.333	Capra_hircus
ENSCPBG00000009567	APEX1	100	70.846	ENSTSYG00000034813	APEX1	100	70.846	Carlito_syrichta
ENSCPBG00000009567	APEX1	81	69.349	ENSCAPG00000016235	APEX1	91	74.153	Cavia_aperea
ENSCPBG00000009567	APEX1	100	70.846	ENSCPOG00000030909	APEX1	100	70.846	Cavia_porcellus
ENSCPBG00000009567	APEX1	100	72.100	ENSCCAG00000033056	-	100	72.100	Cebus_capucinus
ENSCPBG00000009567	APEX1	100	61.442	ENSCCAG00000031931	-	100	61.442	Cebus_capucinus
ENSCPBG00000009567	APEX1	100	72.100	ENSCATG00000015580	APEX1	100	72.100	Cercocebus_atys
ENSCPBG00000009567	APEX1	100	70.846	ENSCLAG00000001002	APEX1	100	70.846	Chinchilla_lanigera
ENSCPBG00000009567	APEX1	100	72.414	ENSCSAG00000016670	-	100	72.414	Chlorocebus_sabaeus
ENSCPBG00000009567	APEX1	100	72.414	ENSCSAG00000016685	-	100	72.414	Chlorocebus_sabaeus
ENSCPBG00000009567	APEX1	84	59.176	ENSCING00000008137	-	85	59.176	Ciona_intestinalis
ENSCPBG00000009567	APEX1	93	48.101	ENSCSAVG00000007144	-	100	55.426	Ciona_savignyi
ENSCPBG00000009567	APEX1	100	72.414	ENSCANG00000030726	APEX1	100	72.414	Colobus_angolensis_palliatus
ENSCPBG00000009567	APEX1	100	70.533	ENSCGRG00001017046	Apex1	100	70.533	Cricetulus_griseus_chok1gshd
ENSCPBG00000009567	APEX1	100	70.533	ENSCGRG00000008984	Apex1	100	70.533	Cricetulus_griseus_crigri
ENSCPBG00000009567	APEX1	99	68.354	ENSCSEG00000017499	apex1	99	68.038	Cynoglossus_semilaevis
ENSCPBG00000009567	APEX1	99	69.937	ENSCVAG00000022075	apex1	99	69.937	Cyprinodon_variegatus
ENSCPBG00000009567	APEX1	100	71.698	ENSDARG00000045843	apex1	100	71.698	Danio_rerio
ENSCPBG00000009567	APEX1	100	66.771	ENSDNOG00000042234	APEX1	95	66.771	Dasypus_novemcinctus
ENSCPBG00000009567	APEX1	100	70.533	ENSDORG00000001616	Apex1	100	70.533	Dipodomys_ordii
ENSCPBG00000009567	APEX1	100	71.473	ENSETEG00000004855	-	100	71.473	Echinops_telfairi
ENSCPBG00000009567	APEX1	75	60.924	ENSEBUG00000000622	-	92	60.924	Eptatretus_burgeri
ENSCPBG00000009567	APEX1	100	71.473	ENSEASG00005017489	APEX1	74	71.473	Equus_asinus_asinus
ENSCPBG00000009567	APEX1	100	71.473	ENSECAG00000022325	APEX1	82	71.473	Equus_caballus
ENSCPBG00000009567	APEX1	90	70.139	ENSEEUG00000012569	APEX1	100	70.139	Erinaceus_europaeus
ENSCPBG00000009567	APEX1	100	70.846	ENSELUG00000021706	apex1	100	70.846	Esox_lucius
ENSCPBG00000009567	APEX1	100	71.473	ENSFCAG00000030869	APEX1	100	71.473	Felis_catus
ENSCPBG00000009567	APEX1	100	71.473	ENSFDAG00000006120	APEX1	100	71.473	Fukomys_damarensis
ENSCPBG00000009567	APEX1	99	70.886	ENSFHEG00000009031	apex1	83	70.886	Fundulus_heteroclitus
ENSCPBG00000009567	APEX1	99	68.038	ENSGMOG00000007943	apex1	99	67.296	Gadus_morhua
ENSCPBG00000009567	APEX1	99	69.620	ENSGAFG00000005311	apex1	99	69.620	Gambusia_affinis
ENSCPBG00000009567	APEX1	99	70.570	ENSGACG00000019497	apex1	99	75.188	Gasterosteus_aculeatus
ENSCPBG00000009567	APEX1	100	96.855	ENSGAGG00000014999	APEX1	100	96.855	Gopherus_agassizii
ENSCPBG00000009567	APEX1	100	72.100	ENSGGOG00000002128	APEX1	100	72.100	Gorilla_gorilla
ENSCPBG00000009567	APEX1	99	70.886	ENSHBUG00000005894	apex1	99	70.570	Haplochromis_burtoni
ENSCPBG00000009567	APEX1	100	71.473	ENSHGLG00000002848	APEX1	100	71.473	Heterocephalus_glaber_female
ENSCPBG00000009567	APEX1	100	71.473	ENSHGLG00100017878	APEX1	100	71.473	Heterocephalus_glaber_male
ENSCPBG00000009567	APEX1	99	70.253	ENSHCOG00000009961	apex1	99	70.253	Hippocampus_comes
ENSCPBG00000009567	APEX1	100	72.327	ENSIPUG00000005799	apex1	100	72.327	Ictalurus_punctatus
ENSCPBG00000009567	APEX1	100	72.100	ENSSTOG00000010096	APEX1	100	72.100	Ictidomys_tridecemlineatus
ENSCPBG00000009567	APEX1	100	62.382	ENSJJAG00000003660	-	100	62.382	Jaculus_jaculus
ENSCPBG00000009567	APEX1	100	69.592	ENSJJAG00000012067	-	100	69.592	Jaculus_jaculus
ENSCPBG00000009567	APEX1	93	65.101	ENSJJAG00000020465	-	96	65.101	Jaculus_jaculus
ENSCPBG00000009567	APEX1	87	76.619	ENSKMAG00000021171	apex1	99	70.570	Kryptolebias_marmoratus
ENSCPBG00000009567	APEX1	99	70.253	ENSLBEG00000010248	apex1	99	70.253	Labrus_bergylta
ENSCPBG00000009567	APEX1	100	71.875	ENSLACG00000008617	APEX1	100	71.875	Latimeria_chalumnae
ENSCPBG00000009567	APEX1	100	70.279	ENSLOCG00000015516	apex1	89	75.801	Lepisosteus_oculatus
ENSCPBG00000009567	APEX1	100	69.906	ENSLAFG00000021872	APEX1	100	69.906	Loxodonta_africana
ENSCPBG00000009567	APEX1	100	71.787	ENSMFAG00000002565	APEX1	100	71.787	Macaca_fascicularis
ENSCPBG00000009567	APEX1	100	72.100	ENSMMUG00000048039	APEX1	100	72.100	Macaca_mulatta
ENSCPBG00000009567	APEX1	100	72.100	ENSMNEG00000036944	APEX1	100	72.100	Macaca_nemestrina
ENSCPBG00000009567	APEX1	100	72.100	ENSMLEG00000042125	APEX1	100	72.100	Mandrillus_leucophaeus
ENSCPBG00000009567	APEX1	99	70.253	ENSMAMG00000023526	apex1	99	70.253	Mastacembelus_armatus
ENSCPBG00000009567	APEX1	86	76.727	ENSMZEG00005014187	apex1	99	71.203	Maylandia_zebra
ENSCPBG00000009567	APEX1	100	70.846	ENSMAUG00000013994	Apex1	100	70.219	Mesocricetus_auratus
ENSCPBG00000009567	APEX1	100	70.533	ENSMICG00000043554	APEX1	100	70.533	Microcebus_murinus
ENSCPBG00000009567	APEX1	100	69.592	ENSMOCG00000013721	Apex1	100	69.592	Microtus_ochrogaster
ENSCPBG00000009567	APEX1	87	74.194	ENSMMOG00000010031	apex1	97	68.339	Mola_mola
ENSCPBG00000009567	APEX1	100	69.062	ENSMODG00000007125	APEX1	100	70.497	Monodelphis_domestica
ENSCPBG00000009567	APEX1	87	69.784	ENSMALG00000011699	apex1	76	69.258	Monopterus_albus
ENSCPBG00000009567	APEX1	99	71.698	MGP_CAROLIEiJ_G0019209	Apex1	99	71.698	Mus_caroli
ENSCPBG00000009567	APEX1	100	71.473	ENSMUSG00000035960	Apex1	100	71.473	Mus_musculus
ENSCPBG00000009567	APEX1	100	71.473	MGP_PahariEiJ_G0030232	Apex1	100	71.473	Mus_pahari
ENSCPBG00000009567	APEX1	100	71.473	MGP_SPRETEiJ_G0020101	Apex1	100	71.473	Mus_spretus
ENSCPBG00000009567	APEX1	100	69.782	ENSMLUG00000028957	APEX1	100	69.782	Myotis_lucifugus
ENSCPBG00000009567	APEX1	88	57.500	ENSNGAG00000021748	-	86	57.500	Nannospalax_galili
ENSCPBG00000009567	APEX1	100	69.906	ENSNGAG00000002725	-	100	69.906	Nannospalax_galili
ENSCPBG00000009567	APEX1	86	76.364	ENSNBRG00000005334	apex1	91	70.886	Neolamprologus_brichardi
ENSCPBG00000009567	APEX1	100	72.100	ENSNLEG00000010839	APEX1	100	72.100	Nomascus_leucogenys
ENSCPBG00000009567	APEX1	100	68.966	ENSMEUG00000014519	APEX1	100	68.966	Notamacropus_eugenii
ENSCPBG00000009567	APEX1	100	71.473	ENSOPRG00000014029	APEX1	100	70.846	Ochotona_princeps
ENSCPBG00000009567	APEX1	97	56.311	ENSODEG00000004777	-	99	56.311	Octodon_degus
ENSCPBG00000009567	APEX1	100	70.533	ENSODEG00000001703	-	100	70.533	Octodon_degus
ENSCPBG00000009567	APEX1	100	55.385	ENSODEG00000006583	-	100	55.385	Octodon_degus
ENSCPBG00000009567	APEX1	87	76.895	ENSONIG00000012089	apex1	99	71.519	Oreochromis_niloticus
ENSCPBG00000009567	APEX1	89	72.183	ENSOANG00000008836	APEX1	80	69.538	Ornithorhynchus_anatinus
ENSCPBG00000009567	APEX1	100	71.473	ENSOCUG00000005022	APEX1	100	71.473	Oryctolagus_cuniculus
ENSCPBG00000009567	APEX1	99	70.570	ENSORLG00000012378	apex1	99	70.570	Oryzias_latipes
ENSCPBG00000009567	APEX1	99	70.570	ENSORLG00020021371	apex1	99	70.570	Oryzias_latipes_hni
ENSCPBG00000009567	APEX1	99	70.570	ENSORLG00015020089	apex1	99	70.570	Oryzias_latipes_hsok
ENSCPBG00000009567	APEX1	99	70.570	ENSOMEG00000018876	apex1	99	70.570	Oryzias_melastigma
ENSCPBG00000009567	APEX1	99	63.924	ENSOGAG00000029355	-	100	63.924	Otolemur_garnettii
ENSCPBG00000009567	APEX1	100	71.160	ENSOGAG00000013335	-	100	71.160	Otolemur_garnettii
ENSCPBG00000009567	APEX1	100	71.160	ENSOARG00000019740	-	100	71.160	Ovis_aries
ENSCPBG00000009567	APEX1	97	67.961	ENSOARG00000001876	-	100	67.961	Ovis_aries
ENSCPBG00000009567	APEX1	94	60.667	ENSOARG00000014424	-	91	61.268	Ovis_aries
ENSCPBG00000009567	APEX1	100	72.414	ENSPPAG00000038760	APEX1	100	72.414	Pan_paniscus
ENSCPBG00000009567	APEX1	100	71.160	ENSPPRG00000011794	APEX1	100	71.160	Panthera_pardus
ENSCPBG00000009567	APEX1	100	71.473	ENSPTIG00000014829	APEX1	100	71.473	Panthera_tigris_altaica
ENSCPBG00000009567	APEX1	100	72.414	ENSPTRG00000006093	APEX1	100	72.414	Pan_troglodytes
ENSCPBG00000009567	APEX1	100	72.100	ENSPANG00000022757	APEX1	100	72.100	Papio_anubis
ENSCPBG00000009567	APEX1	87	73.913	ENSPKIG00000003504	apex1	100	68.847	Paramormyrops_kingsleyae
ENSCPBG00000009567	APEX1	81	69.231	ENSPMGG00000016596	apex1	77	69.231	Periophthalmus_magnuspinnatus
ENSCPBG00000009567	APEX1	100	71.160	ENSPEMG00000019097	Apex1	100	71.160	Peromyscus_maniculatus_bairdii
ENSCPBG00000009567	APEX1	94	69.900	ENSPMAG00000007275	-	96	71.631	Petromyzon_marinus
ENSCPBG00000009567	APEX1	100	67.398	ENSPCIG00000023274	APEX1	100	69.159	Phascolarctos_cinereus
ENSCPBG00000009567	APEX1	99	69.937	ENSPFOG00000004178	apex1	99	69.937	Poecilia_formosa
ENSCPBG00000009567	APEX1	99	69.937	ENSPLAG00000012779	apex1	99	69.937	Poecilia_latipinna
ENSCPBG00000009567	APEX1	99	69.937	ENSPMEG00000019623	apex1	99	69.937	Poecilia_mexicana
ENSCPBG00000009567	APEX1	99	70.253	ENSPREG00000014298	apex1	99	70.570	Poecilia_reticulata
ENSCPBG00000009567	APEX1	100	72.414	ENSPPYG00000005565	APEX1	100	72.414	Pongo_abelii
ENSCPBG00000009567	APEX1	100	68.966	ENSPCAG00000010376	APEX1	100	68.966	Procavia_capensis
ENSCPBG00000009567	APEX1	100	70.846	ENSPCOG00000021564	APEX1	100	70.846	Propithecus_coquereli
ENSCPBG00000009567	APEX1	100	71.028	ENSPVAG00000010736	APEX1	100	70.717	Pteropus_vampyrus
ENSCPBG00000009567	APEX1	86	76.727	ENSPNYG00000023940	apex1	99	71.203	Pundamilia_nyererei
ENSCPBG00000009567	APEX1	95	68.421	ENSPNAG00000020897	apex1	96	70.205	Pygocentrus_nattereri
ENSCPBG00000009567	APEX1	100	70.533	ENSRNOG00000009663	Apex1	100	70.533	Rattus_norvegicus
ENSCPBG00000009567	APEX1	100	72.414	ENSRBIG00000038325	APEX1	99	72.414	Rhinopithecus_bieti
ENSCPBG00000009567	APEX1	100	72.100	ENSSBOG00000018921	-	100	72.100	Saimiri_boliviensis_boliviensis
ENSCPBG00000009567	APEX1	100	61.129	ENSSBOG00000031372	-	100	59.561	Saimiri_boliviensis_boliviensis
ENSCPBG00000009567	APEX1	100	66.975	ENSSHAG00000013524	APEX1	100	66.975	Sarcophilus_harrisii
ENSCPBG00000009567	APEX1	100	69.182	ENSSFOG00015001948	apex1	100	70.126	Scleropages_formosus
ENSCPBG00000009567	APEX1	87	74.368	ENSSMAG00000013348	apex1	99	70.253	Scophthalmus_maximus
ENSCPBG00000009567	APEX1	99	70.570	ENSSDUG00000016377	apex1	99	71.203	Seriola_dumerili
ENSCPBG00000009567	APEX1	99	70.253	ENSSLDG00000023005	apex1	99	70.886	Seriola_lalandi_dorsalis
ENSCPBG00000009567	APEX1	92	79.110	ENSSPUG00000000531	APEX1	99	74.448	Sphenodon_punctatus
ENSCPBG00000009567	APEX1	99	67.722	ENSSPAG00000000458	apex1	99	67.722	Stegastes_partitus
ENSCPBG00000009567	APEX1	84	43.956	ENSSSCG00000039705	-	90	43.956	Sus_scrofa
ENSCPBG00000009567	APEX1	100	70.846	ENSSSCG00000040060	-	100	70.846	Sus_scrofa
ENSCPBG00000009567	APEX1	74	63.404	ENSTGUG00000014378	APEX1	100	63.404	Taeniopygia_guttata
ENSCPBG00000009567	APEX1	87	72.563	ENSTRUG00000004268	apex1	95	68.038	Takifugu_rubripes
ENSCPBG00000009567	APEX1	99	69.716	ENSTNIG00000005778	apex1	99	69.620	Tetraodon_nigroviridis
ENSCPBG00000009567	APEX1	100	68.966	ENSTBEG00000006405	APEX1	100	68.966	Tupaia_belangeri
ENSCPBG00000009567	APEX1	74	72.766	ENSTTRG00000007860	APEX1	100	72.766	Tursiops_truncatus
ENSCPBG00000009567	APEX1	100	70.219	ENSUAMG00000010457	APEX1	100	70.219	Ursus_americanus
ENSCPBG00000009567	APEX1	100	70.219	ENSUMAG00000009178	APEX1	100	70.219	Ursus_maritimus
ENSCPBG00000009567	APEX1	74	69.787	ENSVPAG00000005083	APEX1	100	69.787	Vicugna_pacos
ENSCPBG00000009567	APEX1	100	70.846	ENSVVUG00000009010	APEX1	100	70.846	Vulpes_vulpes
ENSCPBG00000009567	APEX1	100	71.384	ENSXETG00000024773	apex1	100	71.384	Xenopus_tropicalis
ENSCPBG00000009567	APEX1	99	69.620	ENSXCOG00000015233	apex1	99	69.937	Xiphophorus_couchianus
ENSCPBG00000009567	APEX1	99	69.620	ENSXMAG00000006195	apex1	99	69.937	Xiphophorus_maculatus