EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000009645 (Gene tree)
Gene ID: 101932569
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 96016 bases
Position: chr4:4448200-4544215
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000013427	R3H	PF01424.22	1.6e-11	1	1
ENSCPBP00000013455	R3H	PF01424.22	1.6e-11	1	1
ENSCPBP00000013443	R3H	PF01424.22	1.6e-11	1	1
ENSCPBP00000013423	R3H	PF01424.22	1.8e-11	1	1
ENSCPBP00000013409	R3H	PF01424.22	1.8e-11	1	1
ENSCPBP00000013417	R3H	PF01424.22	1.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000015925	R3HDM1-202	3683	-	ENSCPBP00000013417	969 (aa)	-	-
ENSCPBT00000015957	R3HDM1-205	3030	-	ENSCPBP00000013443	1009 (aa)	-	-
ENSCPBT00000015937	R3HDM1-204	3479	-	ENSCPBP00000013427	901 (aa)	-	-
ENSCPBT00000015969	R3HDM1-206	3003	-	ENSCPBP00000013455	1000 (aa)	-	-
ENSCPBT00000015931	R3HDM1-203	3632	-	ENSCPBP00000013423	952 (aa)	-	-
ENSCPBT00000015914	R3HDM1-201	3734	-	ENSCPBP00000013409	986 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000009645's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000009645's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000009645	R3HDM1	65	70.397	ENSCPBG00000013513	ARPP21	70	70.504
ENSCPBG00000009645	R3HDM1	100	54.464	ENSCPBG00000013922	R3HDM2	81	76.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000009645	R3HDM1	100	91.144	ENSG00000048991	R3HDM1	96	90.541	Homo_sapiens
ENSCPBG00000009645	R3HDM1	86	70.144	ENSAPOG00000020850	r3hdm1	80	70.144	Acanthochromis_polyacanthus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSAMEG00000014886	R3HDM1	88	80.370	Ailuropoda_melanoleuca
ENSCPBG00000009645	R3HDM1	86	70.144	ENSAOCG00000005192	r3hdm1	80	70.144	Amphiprion_ocellaris
ENSCPBG00000009645	R3HDM1	86	70.144	ENSAPEG00000016108	r3hdm1	82	70.144	Amphiprion_percula
ENSCPBG00000009645	R3HDM1	86	70.504	ENSATEG00000000232	r3hdm1	94	47.095	Anabas_testudineus
ENSCPBG00000009645	R3HDM1	100	95.203	ENSAPLG00000015231	R3HDM1	88	88.970	Anas_platyrhynchos
ENSCPBG00000009645	R3HDM1	100	93.358	ENSACAG00000001676	R3HDM1	92	84.512	Anolis_carolinensis
ENSCPBG00000009645	R3HDM1	100	91.144	ENSANAG00000035334	R3HDM1	91	91.144	Aotus_nancymaae
ENSCPBG00000009645	R3HDM1	86	70.144	ENSACLG00000027282	r3hdm1	91	49.558	Astatotilapia_calliptera
ENSCPBG00000009645	R3HDM1	67	40.206	ENSAMXG00000020587	arpp21	84	41.973	Astyanax_mexicanus
ENSCPBG00000009645	R3HDM1	99	78.229	ENSAMXG00000003536	r3hdm1	85	78.229	Astyanax_mexicanus
ENSCPBG00000009645	R3HDM1	100	81.618	ENSAMXG00000012861	R3HDM1	86	81.618	Astyanax_mexicanus
ENSCPBG00000009645	R3HDM1	100	90.775	ENSBTAG00000013302	R3HDM1	92	78.721	Bos_taurus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSCJAG00000011718	R3HDM1	91	91.144	Callithrix_jacchus
ENSCPBG00000009645	R3HDM1	100	79.856	ENSCAFG00000005075	R3HDM1	88	80.576	Canis_familiaris
ENSCPBG00000009645	R3HDM1	100	91.144	ENSCAFG00020016119	R3HDM1	92	78.327	Canis_lupus_dingo
ENSCPBG00000009645	R3HDM1	100	90.406	ENSCHIG00000020851	R3HDM1	92	78.872	Capra_hircus
ENSCPBG00000009645	R3HDM1	99	91.011	ENSCPOG00000012784	R3HDM1	89	81.446	Cavia_porcellus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSCCAG00000027199	R3HDM1	91	91.144	Cebus_capucinus
ENSCPBG00000009645	R3HDM1	99	91.111	ENSCATG00000023642	R3HDM1	91	91.111	Cercocebus_atys
ENSCPBG00000009645	R3HDM1	100	91.144	ENSCLAG00000007962	R3HDM1	87	80.471	Chinchilla_lanigera
ENSCPBG00000009645	R3HDM1	100	91.144	ENSCSAG00000016356	R3HDM1	92	78.021	Chlorocebus_sabaeus
ENSCPBG00000009645	R3HDM1	87	82.474	ENSCHOG00000013638	R3HDM1	81	81.356	Choloepus_hoffmanni
ENSCPBG00000009645	R3HDM1	100	91.513	ENSCANG00000034748	R3HDM1	91	91.513	Colobus_angolensis_palliatus
ENSCPBG00000009645	R3HDM1	99	90.406	ENSCGRG00001012357	R3hdm1	89	76.644	Cricetulus_griseus_chok1gshd
ENSCPBG00000009645	R3HDM1	100	90.406	ENSCGRG00000012080	R3hdm1	92	76.733	Cricetulus_griseus_crigri
ENSCPBG00000009645	R3HDM1	86	70.397	ENSCSEG00000008944	r3hdm1	82	70.397	Cynoglossus_semilaevis
ENSCPBG00000009645	R3HDM1	86	70.504	ENSCVAG00000007582	r3hdm1	82	70.504	Cyprinodon_variegatus
ENSCPBG00000009645	R3HDM1	63	39.688	ENSDARG00000061081	arpp21	78	57.642	Danio_rerio
ENSCPBG00000009645	R3HDM1	100	88.561	ENSDNOG00000000771	R3HDM1	87	79.628	Dasypus_novemcinctus
ENSCPBG00000009645	R3HDM1	92	88.971	ENSETEG00000013606	R3HDM1	77	90.110	Echinops_telfairi
ENSCPBG00000009645	R3HDM1	58	55.517	ENSEBUG00000014746	arpp21	93	44.118	Eptatretus_burgeri
ENSCPBG00000009645	R3HDM1	100	91.144	ENSEASG00005007392	R3HDM1	87	91.144	Equus_asinus_asinus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSECAG00000019114	R3HDM1	87	91.144	Equus_caballus
ENSCPBG00000009645	R3HDM1	81	85.600	ENSEEUG00000012589	R3HDM1	78	80.132	Erinaceus_europaeus
ENSCPBG00000009645	R3HDM1	99	77.239	ENSELUG00000014413	r3hdm1	96	55.631	Esox_lucius
ENSCPBG00000009645	R3HDM1	100	76.753	ENSELUG00000004909	R3HDM1	94	58.977	Esox_lucius
ENSCPBG00000009645	R3HDM1	100	91.144	ENSFCAG00000027113	R3HDM1	87	91.144	Felis_catus
ENSCPBG00000009645	R3HDM1	72	82.700	ENSFALG00000013731	R3HDM1	75	92.647	Ficedula_albicollis
ENSCPBG00000009645	R3HDM1	100	91.513	ENSFDAG00000016478	R3HDM1	87	81.560	Fukomys_damarensis
ENSCPBG00000009645	R3HDM1	86	71.583	ENSFHEG00000018713	r3hdm1	79	71.583	Fundulus_heteroclitus
ENSCPBG00000009645	R3HDM1	64	79.323	ENSGMOG00000006042	-	81	64.140	Gadus_morhua
ENSCPBG00000009645	R3HDM1	100	83.021	ENSGALG00000012246	R3HDM1	96	93.307	Gallus_gallus
ENSCPBG00000009645	R3HDM1	87	50.621	ENSGAFG00000006203	r3hdm1	91	51.184	Gambusia_affinis
ENSCPBG00000009645	R3HDM1	91	69.784	ENSGACG00000014925	r3hdm1	96	47.059	Gasterosteus_aculeatus
ENSCPBG00000009645	R3HDM1	100	98.155	ENSGAGG00000007840	R3HDM1	92	94.686	Gopherus_agassizii
ENSCPBG00000009645	R3HDM1	100	91.144	ENSGGOG00000008156	R3HDM1	91	91.144	Gorilla_gorilla
ENSCPBG00000009645	R3HDM1	100	90.406	ENSHGLG00000015718	R3HDM1	88	80.471	Heterocephalus_glaber_female
ENSCPBG00000009645	R3HDM1	100	70.111	ENSHGLG00100015374	-	92	62.913	Heterocephalus_glaber_male
ENSCPBG00000009645	R3HDM1	100	90.406	ENSHGLG00100003184	-	88	80.471	Heterocephalus_glaber_male
ENSCPBG00000009645	R3HDM1	86	67.986	ENSHCOG00000013366	r3hdm1	82	69.065	Hippocampus_comes
ENSCPBG00000009645	R3HDM1	55	51.915	ENSIPUG00000020552	arpp21	78	53.200	Ictalurus_punctatus
ENSCPBG00000009645	R3HDM1	93	72.438	ENSIPUG00000013629	r3hdm1	90	75.191	Ictalurus_punctatus
ENSCPBG00000009645	R3HDM1	86	78.755	ENSIPUG00000001676	R3HDM1	80	76.619	Ictalurus_punctatus
ENSCPBG00000009645	R3HDM1	100	90.037	ENSSTOG00000007572	R3HDM1	92	77.514	Ictidomys_tridecemlineatus
ENSCPBG00000009645	R3HDM1	100	90.775	ENSLACG00000005334	R3HDM1	84	90.809	Latimeria_chalumnae
ENSCPBG00000009645	R3HDM1	100	70.859	ENSLOCG00000001641	r3hdm1	92	67.360	Lepisosteus_oculatus
ENSCPBG00000009645	R3HDM1	100	91.882	ENSLAFG00000009065	R3HDM1	92	79.654	Loxodonta_africana
ENSCPBG00000009645	R3HDM1	100	91.144	ENSMFAG00000030331	R3HDM1	91	91.144	Macaca_fascicularis
ENSCPBG00000009645	R3HDM1	100	91.144	ENSMMUG00000009844	R3HDM1	91	91.144	Macaca_mulatta
ENSCPBG00000009645	R3HDM1	100	91.144	ENSMNEG00000027793	R3HDM1	91	91.144	Macaca_nemestrina
ENSCPBG00000009645	R3HDM1	100	91.144	ENSMLEG00000043189	R3HDM1	91	91.144	Mandrillus_leucophaeus
ENSCPBG00000009645	R3HDM1	86	69.784	ENSMAMG00000004532	r3hdm1	82	69.784	Mastacembelus_armatus
ENSCPBG00000009645	R3HDM1	86	70.144	ENSMZEG00005003157	r3hdm1	82	70.144	Maylandia_zebra
ENSCPBG00000009645	R3HDM1	99	94.382	ENSMGAG00000012461	R3HDM1	88	88.831	Meleagris_gallopavo
ENSCPBG00000009645	R3HDM1	100	77.844	ENSMAUG00000010315	R3hdm1	92	76.231	Mesocricetus_auratus
ENSCPBG00000009645	R3HDM1	100	90.775	ENSMICG00000005900	-	91	90.775	Microcebus_murinus
ENSCPBG00000009645	R3HDM1	95	74.061	ENSMICG00000042655	-	90	90.406	Microcebus_murinus
ENSCPBG00000009645	R3HDM1	87	88.968	ENSMODG00000000923	R3HDM1	89	79.075	Monodelphis_domestica
ENSCPBG00000009645	R3HDM1	99	70.504	ENSMALG00000009000	r3hdm1	82	70.504	Monopterus_albus
ENSCPBG00000009645	R3HDM1	100	90.775	MGP_CAROLIEiJ_G0014543	R3hdm1	92	76.213	Mus_caroli
ENSCPBG00000009645	R3HDM1	100	90.775	ENSMUSG00000056211	R3hdm1	92	75.737	Mus_musculus
ENSCPBG00000009645	R3HDM1	100	90.775	MGP_PahariEiJ_G0027779	R3hdm1	92	76.000	Mus_pahari
ENSCPBG00000009645	R3HDM1	100	90.775	MGP_SPRETEiJ_G0015350	R3hdm1	92	75.737	Mus_spretus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSMPUG00000002412	R3HDM1	88	80.556	Mustela_putorius_furo
ENSCPBG00000009645	R3HDM1	100	90.406	ENSMLUG00000013824	R3HDM1	88	79.406	Myotis_lucifugus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSNLEG00000008622	R3HDM1	91	91.144	Nomascus_leucogenys
ENSCPBG00000009645	R3HDM1	84	73.449	ENSMEUG00000011784	R3HDM1	91	69.399	Notamacropus_eugenii
ENSCPBG00000009645	R3HDM1	100	91.144	ENSODEG00000008607	R3HDM1	87	80.471	Octodon_degus
ENSCPBG00000009645	R3HDM1	99	48.051	ENSONIG00000012017	r3hdm1	96	43.905	Oreochromis_niloticus
ENSCPBG00000009645	R3HDM1	100	91.513	ENSOANG00000007987	R3HDM1	88	82.834	Ornithorhynchus_anatinus
ENSCPBG00000009645	R3HDM1	86	90.037	ENSOCUG00000017366	R3HDM1	84	79.529	Oryctolagus_cuniculus
ENSCPBG00000009645	R3HDM1	86	69.424	ENSORLG00000004297	r3hdm1	82	69.424	Oryzias_latipes
ENSCPBG00000009645	R3HDM1	88	69.784	ENSORLG00015017355	r3hdm1	82	69.784	Oryzias_latipes_hsok
ENSCPBG00000009645	R3HDM1	100	91.144	ENSOGAG00000003136	R3HDM1	88	80.742	Otolemur_garnettii
ENSCPBG00000009645	R3HDM1	100	90.406	ENSOARG00000010788	R3HDM1	88	80.849	Ovis_aries
ENSCPBG00000009645	R3HDM1	100	91.144	ENSPPAG00000027858	R3HDM1	91	91.144	Pan_paniscus
ENSCPBG00000009645	R3HDM1	100	90.775	ENSPPRG00000002626	R3HDM1	91	90.775	Panthera_pardus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSPTIG00000016581	R3HDM1	91	91.144	Panthera_tigris_altaica
ENSCPBG00000009645	R3HDM1	100	91.144	ENSPTRG00000012494	R3HDM1	91	91.144	Pan_troglodytes
ENSCPBG00000009645	R3HDM1	100	91.144	ENSPANG00000026448	R3HDM1	91	91.144	Papio_anubis
ENSCPBG00000009645	R3HDM1	100	62.756	ENSPKIG00000004328	r3hdm1	87	80.515	Paramormyrops_kingsleyae
ENSCPBG00000009645	R3HDM1	100	95.941	ENSPSIG00000012915	R3HDM1	88	92.701	Pelodiscus_sinensis
ENSCPBG00000009645	R3HDM1	100	78.628	ENSPEMG00000015187	R3hdm1	92	76.879	Peromyscus_maniculatus_bairdii
ENSCPBG00000009645	R3HDM1	91	66.549	ENSPMAG00000003369	-	84	66.316	Petromyzon_marinus
ENSCPBG00000009645	R3HDM1	100	92.279	ENSPCIG00000002491	R3HDM1	95	80.833	Phascolarctos_cinereus
ENSCPBG00000009645	R3HDM1	86	70.758	ENSPFOG00000015036	r3hdm1	91	48.438	Poecilia_formosa
ENSCPBG00000009645	R3HDM1	87	50.670	ENSPLAG00000018042	r3hdm1	91	50.895	Poecilia_latipinna
ENSCPBG00000009645	R3HDM1	87	50.950	ENSPMEG00000023947	r3hdm1	91	50.840	Poecilia_mexicana
ENSCPBG00000009645	R3HDM1	86	71.942	ENSPREG00000007902	r3hdm1	82	71.942	Poecilia_reticulata
ENSCPBG00000009645	R3HDM1	100	79.137	ENSPPYG00000012815	R3HDM1	88	79.548	Pongo_abelii
ENSCPBG00000009645	R3HDM1	94	90.710	ENSPCAG00000006208	R3HDM1	81	90.256	Procavia_capensis
ENSCPBG00000009645	R3HDM1	99	90.370	ENSPCOG00000012698	R3HDM1	92	90.370	Propithecus_coquereli
ENSCPBG00000009645	R3HDM1	97	90.000	ENSPVAG00000006098	R3HDM1	78	90.041	Pteropus_vampyrus
ENSCPBG00000009645	R3HDM1	99	77.491	ENSPNAG00000013952	r3hdm1	85	77.491	Pygocentrus_nattereri
ENSCPBG00000009645	R3HDM1	92	80.784	ENSPNAG00000005436	R3HDM1	95	80.709	Pygocentrus_nattereri
ENSCPBG00000009645	R3HDM1	66	41.902	ENSPNAG00000004162	arpp21	77	58.893	Pygocentrus_nattereri
ENSCPBG00000009645	R3HDM1	100	76.541	ENSRNOG00000004099	R3hdm1	92	74.976	Rattus_norvegicus
ENSCPBG00000009645	R3HDM1	100	91.513	ENSRBIG00000033317	R3HDM1	100	91.513	Rhinopithecus_bieti
ENSCPBG00000009645	R3HDM1	100	91.513	ENSRROG00000034534	R3HDM1	91	91.513	Rhinopithecus_roxellana
ENSCPBG00000009645	R3HDM1	100	91.144	ENSSBOG00000020389	R3HDM1	91	91.144	Saimiri_boliviensis_boliviensis
ENSCPBG00000009645	R3HDM1	100	91.912	ENSSHAG00000016999	R3HDM1	91	83.904	Sarcophilus_harrisii
ENSCPBG00000009645	R3HDM1	100	77.289	ENSSFOG00015019851	-	88	67.488	Scleropages_formosus
ENSCPBG00000009645	R3HDM1	100	83.456	ENSSFOG00015014134	r3hdm1	87	83.456	Scleropages_formosus
ENSCPBG00000009645	R3HDM1	99	45.312	ENSSMAG00000001669	r3hdm1	91	45.659	Scophthalmus_maximus
ENSCPBG00000009645	R3HDM1	87	48.735	ENSSDUG00000010749	r3hdm1	81	70.397	Seriola_dumerili
ENSCPBG00000009645	R3HDM1	99	47.530	ENSSLDG00000004499	r3hdm1	80	70.397	Seriola_lalandi_dorsalis
ENSCPBG00000009645	R3HDM1	70	74.699	ENSSARG00000000352	-	57	74.699	Sorex_araneus
ENSCPBG00000009645	R3HDM1	100	93.382	ENSSPUG00000004167	R3HDM1	88	89.666	Sphenodon_punctatus
ENSCPBG00000009645	R3HDM1	86	70.144	ENSSPAG00000004648	r3hdm1	82	70.144	Stegastes_partitus
ENSCPBG00000009645	R3HDM1	100	90.775	ENSSSCG00000015692	R3HDM1	91	91.732	Sus_scrofa
ENSCPBG00000009645	R3HDM1	100	92.620	ENSTGUG00000011750	R3HDM1	80	92.647	Taeniopygia_guttata
ENSCPBG00000009645	R3HDM1	86	68.705	ENSTRUG00000011654	r3hdm1	81	68.705	Takifugu_rubripes
ENSCPBG00000009645	R3HDM1	88	47.592	ENSTNIG00000010362	r3hdm1	88	47.532	Tetraodon_nigroviridis
ENSCPBG00000009645	R3HDM1	100	90.775	ENSTTRG00000003935	R3HDM1	88	77.146	Tursiops_truncatus
ENSCPBG00000009645	R3HDM1	65	91.144	ENSUAMG00000024806	R3HDM1	80	91.144	Ursus_americanus
ENSCPBG00000009645	R3HDM1	100	91.144	ENSUMAG00000005552	R3HDM1	91	91.144	Ursus_maritimus
ENSCPBG00000009645	R3HDM1	100	86.716	ENSVPAG00000007333	R3HDM1	88	76.629	Vicugna_pacos
ENSCPBG00000009645	R3HDM1	100	91.144	ENSVVUG00000006457	R3HDM1	91	91.144	Vulpes_vulpes
ENSCPBG00000009645	R3HDM1	88	75.621	ENSXETG00000019330	r3hdm1	77	88.971	Xenopus_tropicalis
ENSCPBG00000009645	R3HDM1	73	51.701	ENSXCOG00000017448	r3hdm1	90	52.109	Xiphophorus_couchianus
ENSCPBG00000009645	R3HDM1	86	71.583	ENSXMAG00000007885	r3hdm1	79	71.583	Xiphophorus_maculatus