EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000009851 (Gene tree)
Gene ID: 101941400
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 4193 bases
Position: chrKK088184.1:3550100-3554292
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000013121	RRM_1	PF00076.22	1.9e-33	1	2
ENSCPBP00000013121	RRM_1	PF00076.22	1.9e-33	2	2
ENSCPBP00000013124	RRM_1	PF00076.22	2e-33	1	2
ENSCPBP00000013124	RRM_1	PF00076.22	2e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000015591	-	2532	-	ENSCPBP00000013124	253 (aa)	-	UPI000388F8AF
ENSCPBT00000015587	-	2939	XM_024099685	ENSCPBP00000013121	248 (aa)	XP_023955453	UPI00005B0B4F

Gene Model

Click here to download ENSCPBG00000009851's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG
cpic05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000009851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000009851	-	90	70.721	ENSCPBG00000011340	SRSF9	79	74.586
ENSCPBG00000009851	-	80	42.157	ENSCPBG00000021653	SRSF5	70	39.524
ENSCPBG00000009851	-	67	42.778	ENSCPBG00000021518	-	65	45.029
ENSCPBG00000009851	-	78	41.063	ENSCPBG00000018200	SRSF6	58	40.758

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000009851	-	100	98.814	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSCPBG00000009851	-	79	89.655	ENSAPOG00000008542	-	100	85.039	Acanthochromis_polyacanthus
ENSCPBG00000009851	-	78	91.192	ENSAPOG00000002748	-	98	83.951	Acanthochromis_polyacanthus
ENSCPBG00000009851	-	100	95.968	ENSAMEG00000002635	SRSF1	100	95.968	Ailuropoda_melanoleuca
ENSCPBG00000009851	-	88	85.650	ENSACIG00000008091	srsf1a	98	78.512	Amphilophus_citrinellus
ENSCPBG00000009851	-	79	89.655	ENSAOCG00000000337	-	100	85.317	Amphiprion_ocellaris
ENSCPBG00000009851	-	88	86.099	ENSAOCG00000010671	-	98	84.774	Amphiprion_ocellaris
ENSCPBG00000009851	-	79	89.655	ENSAPEG00000023352	-	99	85.375	Amphiprion_percula
ENSCPBG00000009851	-	88	86.099	ENSAPEG00000009915	-	98	84.774	Amphiprion_percula
ENSCPBG00000009851	-	82	85.714	ENSATEG00000021567	-	100	84.146	Anabas_testudineus
ENSCPBG00000009851	-	78	91.710	ENSATEG00000022403	-	98	84.490	Anabas_testudineus
ENSCPBG00000009851	-	100	99.597	ENSACAG00000005542	-	100	99.597	Anolis_carolinensis
ENSCPBG00000009851	-	100	98.814	ENSANAG00000020583	-	100	98.814	Aotus_nancymaae
ENSCPBG00000009851	-	81	72.000	ENSANAG00000025417	-	99	74.797	Aotus_nancymaae
ENSCPBG00000009851	-	74	86.408	ENSAMXG00000024373	-	94	85.990	Astyanax_mexicanus
ENSCPBG00000009851	-	96	94.355	ENSAMXG00000035996	srsf1a	98	94.355	Astyanax_mexicanus
ENSCPBG00000009851	-	100	98.814	ENSBTAG00000014766	SRSF1	100	98.814	Bos_taurus
ENSCPBG00000009851	-	100	98.814	ENSCJAG00000041713	-	100	98.814	Callithrix_jacchus
ENSCPBG00000009851	-	79	90.306	ENSCJAG00000008111	-	88	89.848	Callithrix_jacchus
ENSCPBG00000009851	-	100	98.814	ENSCAFG00000017430	SRSF1	100	98.814	Canis_familiaris
ENSCPBG00000009851	-	100	98.814	ENSCAFG00020025632	-	100	98.814	Canis_lupus_dingo
ENSCPBG00000009851	-	100	98.790	ENSCHIG00000010787	SRSF1	100	98.790	Capra_hircus
ENSCPBG00000009851	-	100	98.814	ENSTSYG00000013899	-	100	98.814	Carlito_syrichta
ENSCPBG00000009851	-	100	98.814	ENSCPOG00000032681	-	100	98.814	Cavia_porcellus
ENSCPBG00000009851	-	100	98.814	ENSCCAG00000029484	-	100	98.814	Cebus_capucinus
ENSCPBG00000009851	-	100	98.814	ENSCATG00000042294	-	100	98.814	Cercocebus_atys
ENSCPBG00000009851	-	100	98.814	ENSCLAG00000014707	-	100	98.814	Chinchilla_lanigera
ENSCPBG00000009851	-	100	98.024	ENSCSAG00000005642	-	100	98.024	Chlorocebus_sabaeus
ENSCPBG00000009851	-	100	98.790	ENSCHOG00000001899	SRSF1	100	98.790	Choloepus_hoffmanni
ENSCPBG00000009851	-	100	98.814	ENSCANG00000029726	-	100	98.814	Colobus_angolensis_palliatus
ENSCPBG00000009851	-	100	98.814	ENSCGRG00001000670	Srsf1	100	98.814	Cricetulus_griseus_chok1gshd
ENSCPBG00000009851	-	100	98.814	ENSCGRG00000005590	Srsf1	100	98.814	Cricetulus_griseus_crigri
ENSCPBG00000009851	-	78	92.857	ENSCSEG00000014272	-	98	85.772	Cynoglossus_semilaevis
ENSCPBG00000009851	-	79	83.491	ENSCSEG00000009973	-	100	79.924	Cynoglossus_semilaevis
ENSCPBG00000009851	-	78	89.231	ENSCVAG00000005458	-	98	85.772	Cyprinodon_variegatus
ENSCPBG00000009851	-	78	91.710	ENSCVAG00000018617	-	98	84.774	Cyprinodon_variegatus
ENSCPBG00000009851	-	99	97.959	ENSDARG00000017843	srsf1b	99	97.959	Danio_rerio
ENSCPBG00000009851	-	99	93.333	ENSDARG00000057691	srsf1a	99	93.333	Danio_rerio
ENSCPBG00000009851	-	100	98.814	ENSDNOG00000011737	-	100	98.814	Dasypus_novemcinctus
ENSCPBG00000009851	-	100	98.814	ENSDORG00000015082	Srsf1	100	98.814	Dipodomys_ordii
ENSCPBG00000009851	-	74	97.283	ENSETEG00000005349	-	63	97.283	Echinops_telfairi
ENSCPBG00000009851	-	100	98.814	ENSEASG00005002922	-	100	98.814	Equus_asinus_asinus
ENSCPBG00000009851	-	100	98.790	ENSECAG00000016654	SRSF1	100	98.790	Equus_caballus
ENSCPBG00000009851	-	74	98.370	ENSEEUG00000009255	-	63	98.370	Erinaceus_europaeus
ENSCPBG00000009851	-	78	94.845	ENSELUG00000021646	srsf1a	98	81.048	Esox_lucius
ENSCPBG00000009851	-	100	98.814	ENSFCAG00000002250	-	100	98.814	Felis_catus
ENSCPBG00000009851	-	100	83.399	ENSFALG00000005062	-	100	83.399	Ficedula_albicollis
ENSCPBG00000009851	-	100	98.814	ENSFDAG00000010646	-	100	98.814	Fukomys_damarensis
ENSCPBG00000009851	-	88	86.099	ENSFHEG00000003174	srsf1a	98	84.774	Fundulus_heteroclitus
ENSCPBG00000009851	-	80	90.404	ENSGMOG00000014787	-	99	83.471	Gadus_morhua
ENSCPBG00000009851	-	100	100.000	ENSGALG00000005525	SRSF1	100	100.000	Gallus_gallus
ENSCPBG00000009851	-	79	86.802	ENSGACG00000020621	srsf1b	100	74.390	Gasterosteus_aculeatus
ENSCPBG00000009851	-	100	100.000	ENSGAGG00000022965	-	100	100.000	Gopherus_agassizii
ENSCPBG00000009851	-	100	98.814	ENSGGOG00000004386	SRSF1	100	98.814	Gorilla_gorilla
ENSCPBG00000009851	-	88	85.650	ENSHBUG00000016788	srsf1a	98	84.362	Haplochromis_burtoni
ENSCPBG00000009851	-	87	98.605	ENSHGLG00000000669	-	100	98.605	Heterocephalus_glaber_female
ENSCPBG00000009851	-	87	98.605	ENSHGLG00000000600	-	100	98.605	Heterocephalus_glaber_female
ENSCPBG00000009851	-	100	98.814	ENSHGLG00100016906	-	100	98.814	Heterocephalus_glaber_male
ENSCPBG00000009851	-	78	86.802	ENSHCOG00000018918	srsf1a	97	81.526	Hippocampus_comes
ENSCPBG00000009851	-	94	92.469	ENSIPUG00000017039	srsf1a	98	94.355	Ictalurus_punctatus
ENSCPBG00000009851	-	100	97.177	ENSIPUG00000008750	srsf1b	100	97.177	Ictalurus_punctatus
ENSCPBG00000009851	-	100	98.814	ENSSTOG00000000243	-	100	98.814	Ictidomys_tridecemlineatus
ENSCPBG00000009851	-	100	98.814	ENSJJAG00000000102	-	100	98.814	Jaculus_jaculus
ENSCPBG00000009851	-	51	92.126	ENSJJAG00000014464	-	95	88.189	Jaculus_jaculus
ENSCPBG00000009851	-	78	91.710	ENSKMAG00000019232	srsf1a	98	83.539	Kryptolebias_marmoratus
ENSCPBG00000009851	-	88	86.996	ENSLBEG00000020864	-	98	85.597	Labrus_bergylta
ENSCPBG00000009851	-	79	86.000	ENSLBEG00000015294	-	98	84.337	Labrus_bergylta
ENSCPBG00000009851	-	99	97.143	ENSLACG00000014160	srsf1a	92	97.143	Latimeria_chalumnae
ENSCPBG00000009851	-	100	98.387	ENSLOCG00000005994	srsf1a	100	98.387	Lepisosteus_oculatus
ENSCPBG00000009851	-	100	98.790	ENSLAFG00000025743	SRSF1	100	98.790	Loxodonta_africana
ENSCPBG00000009851	-	100	98.814	ENSMFAG00000040003	-	100	98.814	Macaca_fascicularis
ENSCPBG00000009851	-	100	96.047	ENSMMUG00000003260	-	100	96.047	Macaca_mulatta
ENSCPBG00000009851	-	100	98.814	ENSMMUG00000004725	SRSF1	100	98.814	Macaca_mulatta
ENSCPBG00000009851	-	100	98.814	ENSMNEG00000027680	-	100	98.814	Macaca_nemestrina
ENSCPBG00000009851	-	100	95.652	ENSMNEG00000015983	-	100	95.652	Macaca_nemestrina
ENSCPBG00000009851	-	100	98.790	ENSMLEG00000040509	SRSF1	100	98.790	Mandrillus_leucophaeus
ENSCPBG00000009851	-	100	92.490	ENSMLEG00000015243	-	100	92.095	Mandrillus_leucophaeus
ENSCPBG00000009851	-	78	91.710	ENSMAMG00000018454	-	98	84.774	Mastacembelus_armatus
ENSCPBG00000009851	-	79	94.416	ENSMAMG00000019691	-	100	87.805	Mastacembelus_armatus
ENSCPBG00000009851	-	79	88.832	ENSMAMG00000019687	-	100	83.871	Mastacembelus_armatus
ENSCPBG00000009851	-	100	98.814	ENSMAUG00000021845	Srsf1	100	98.814	Mesocricetus_auratus
ENSCPBG00000009851	-	100	98.814	ENSMICG00000013639	-	100	98.814	Microcebus_murinus
ENSCPBG00000009851	-	100	98.814	ENSMOCG00000001996	Srsf1	100	98.814	Microtus_ochrogaster
ENSCPBG00000009851	-	88	86.547	ENSMMOG00000014354	srsf1a	98	79.339	Mola_mola
ENSCPBG00000009851	-	74	98.378	ENSMODG00000014781	-	63	98.378	Monodelphis_domestica
ENSCPBG00000009851	-	82	81.373	ENSMALG00000007763	-	79	81.218	Monopterus_albus
ENSCPBG00000009851	-	78	91.192	ENSMALG00000017129	-	75	88.083	Monopterus_albus
ENSCPBG00000009851	-	100	98.814	MGP_CAROLIEiJ_G0016943	Srsf1	100	98.814	Mus_caroli
ENSCPBG00000009851	-	100	98.814	ENSMUSG00000018379	Srsf1	100	98.814	Mus_musculus
ENSCPBG00000009851	-	100	98.814	MGP_PahariEiJ_G0018074	Srsf1	100	98.814	Mus_pahari
ENSCPBG00000009851	-	100	98.814	MGP_SPRETEiJ_G0017790	Srsf1	100	98.814	Mus_spretus
ENSCPBG00000009851	-	100	98.790	ENSMPUG00000015369	SRSF1	100	98.790	Mustela_putorius_furo
ENSCPBG00000009851	-	100	98.790	ENSMLUG00000011040	SRSF1	100	98.790	Myotis_lucifugus
ENSCPBG00000009851	-	82	89.655	ENSMLUG00000023995	-	100	89.516	Myotis_lucifugus
ENSCPBG00000009851	-	100	98.790	ENSNGAG00000011395	Srsf1	100	98.790	Nannospalax_galili
ENSCPBG00000009851	-	100	79.839	ENSNBRG00000008041	srsf1b	80	82.741	Neolamprologus_brichardi
ENSCPBG00000009851	-	100	98.814	ENSNLEG00000008088	-	100	98.814	Nomascus_leucogenys
ENSCPBG00000009851	-	51	98.425	ENSMEUG00000002783	-	100	98.425	Notamacropus_eugenii
ENSCPBG00000009851	-	74	98.361	ENSOPRG00000001234	-	100	98.361	Ochotona_princeps
ENSCPBG00000009851	-	100	98.387	ENSODEG00000011481	-	100	98.387	Octodon_degus
ENSCPBG00000009851	-	96	91.139	ENSONIG00000004860	-	81	91.371	Oreochromis_niloticus
ENSCPBG00000009851	-	78	91.192	ENSONIG00000013160	-	98	84.362	Oreochromis_niloticus
ENSCPBG00000009851	-	100	69.841	ENSOCUG00000010894	-	77	71.282	Oryctolagus_cuniculus
ENSCPBG00000009851	-	78	91.710	ENSORLG00000004580	srsf1a	98	84.774	Oryzias_latipes
ENSCPBG00000009851	-	88	86.099	ENSORLG00020009456	srsf1a	98	84.774	Oryzias_latipes_hni
ENSCPBG00000009851	-	88	86.099	ENSORLG00015014384	srsf1a	98	84.362	Oryzias_latipes_hsok
ENSCPBG00000009851	-	71	89.773	ENSOMEG00000004106	srsf1a	92	82.301	Oryzias_melastigma
ENSCPBG00000009851	-	100	98.790	ENSOGAG00000025950	-	100	98.790	Otolemur_garnettii
ENSCPBG00000009851	-	100	93.952	ENSOARG00000008323	SRSF1	100	93.952	Ovis_aries
ENSCPBG00000009851	-	100	98.814	ENSPPAG00000043403	-	100	98.814	Pan_paniscus
ENSCPBG00000009851	-	100	98.814	ENSPPRG00000004238	-	100	98.814	Panthera_pardus
ENSCPBG00000009851	-	100	98.814	ENSPTRG00000049077	SRSF1	100	98.814	Pan_troglodytes
ENSCPBG00000009851	-	100	75.889	ENSPANG00000030275	-	100	75.494	Papio_anubis
ENSCPBG00000009851	-	100	98.814	ENSPANG00000022305	-	100	98.814	Papio_anubis
ENSCPBG00000009851	-	100	97.177	ENSPKIG00000012857	srsf1b	100	97.177	Paramormyrops_kingsleyae
ENSCPBG00000009851	-	99	96.327	ENSPKIG00000007204	srsf1a	99	96.327	Paramormyrops_kingsleyae
ENSCPBG00000009851	-	79	92.462	ENSPSIG00000009000	-	100	93.200	Pelodiscus_sinensis
ENSCPBG00000009851	-	88	83.408	ENSPMGG00000013112	-	99	85.232	Periophthalmus_magnuspinnatus
ENSCPBG00000009851	-	96	84.519	ENSPMGG00000005467	-	99	85.043	Periophthalmus_magnuspinnatus
ENSCPBG00000009851	-	100	98.814	ENSPEMG00000021416	Srsf1	100	98.814	Peromyscus_maniculatus_bairdii
ENSCPBG00000009851	-	100	98.795	ENSPCIG00000006076	-	100	98.795	Phascolarctos_cinereus
ENSCPBG00000009851	-	79	89.394	ENSPFOG00000018325	-	86	85.306	Poecilia_formosa
ENSCPBG00000009851	-	79	89.394	ENSPLAG00000008416	srsf1b	98	85.306	Poecilia_latipinna
ENSCPBG00000009851	-	50	89.431	ENSPMEG00000014312	-	98	87.805	Poecilia_mexicana
ENSCPBG00000009851	-	50	89.431	ENSPMEG00000020607	-	98	87.805	Poecilia_mexicana
ENSCPBG00000009851	-	79	89.394	ENSPMEG00000002388	-	98	85.306	Poecilia_mexicana
ENSCPBG00000009851	-	78	91.710	ENSPREG00000009667	srsf1a	98	84.774	Poecilia_reticulata
ENSCPBG00000009851	-	100	98.814	ENSPPYG00000008240	SRSF1	100	98.814	Pongo_abelii
ENSCPBG00000009851	-	100	98.790	ENSPCAG00000005199	SRSF1	100	98.790	Procavia_capensis
ENSCPBG00000009851	-	80	76.238	ENSPCOG00000025736	-	95	76.020	Propithecus_coquereli
ENSCPBG00000009851	-	100	98.814	ENSPCOG00000023654	-	100	98.814	Propithecus_coquereli
ENSCPBG00000009851	-	75	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSCPBG00000009851	-	94	94.444	ENSPNAG00000022241	srsf1a	98	92.181	Pygocentrus_nattereri
ENSCPBG00000009851	-	100	95.565	ENSPNAG00000014601	srsf1b	100	95.565	Pygocentrus_nattereri
ENSCPBG00000009851	-	100	98.790	ENSRNOG00000050323	Srsf1	100	98.790	Rattus_norvegicus
ENSCPBG00000009851	-	100	98.814	ENSRBIG00000034445	-	100	98.814	Rhinopithecus_bieti
ENSCPBG00000009851	-	100	98.814	ENSRROG00000041506	-	100	98.814	Rhinopithecus_roxellana
ENSCPBG00000009851	-	100	98.814	ENSSBOG00000025377	-	100	98.814	Saimiri_boliviensis_boliviensis
ENSCPBG00000009851	-	100	98.795	ENSSHAG00000002552	-	100	98.795	Sarcophilus_harrisii
ENSCPBG00000009851	-	99	97.571	ENSSFOG00015004800	srsf1a	99	97.571	Scleropages_formosus
ENSCPBG00000009851	-	78	92.228	ENSSMAG00000007018	-	98	84.362	Scophthalmus_maximus
ENSCPBG00000009851	-	94	87.500	ENSSMAG00000009719	-	100	86.667	Scophthalmus_maximus
ENSCPBG00000009851	-	100	76.494	ENSSDUG00000003929	-	99	77.510	Seriola_dumerili
ENSCPBG00000009851	-	88	86.996	ENSSDUG00000011303	-	98	85.597	Seriola_dumerili
ENSCPBG00000009851	-	95	77.119	ENSSLDG00000016895	-	99	76.518	Seriola_lalandi_dorsalis
ENSCPBG00000009851	-	79	83.333	ENSSLDG00000016868	-	99	82.258	Seriola_lalandi_dorsalis
ENSCPBG00000009851	-	78	92.746	ENSSLDG00000010543	-	98	85.597	Seriola_lalandi_dorsalis
ENSCPBG00000009851	-	74	98.370	ENSSARG00000010949	-	63	98.370	Sorex_araneus
ENSCPBG00000009851	-	100	100.000	ENSSPUG00000000804	-	100	100.000	Sphenodon_punctatus
ENSCPBG00000009851	-	78	92.228	ENSSPAG00000022562	-	98	85.185	Stegastes_partitus
ENSCPBG00000009851	-	79	86.603	ENSSPAG00000014152	-	99	83.398	Stegastes_partitus
ENSCPBG00000009851	-	100	98.814	ENSSSCG00000017626	-	100	98.814	Sus_scrofa
ENSCPBG00000009851	-	74	100.000	ENSTGUG00000008416	-	100	100.000	Taeniopygia_guttata
ENSCPBG00000009851	-	78	91.192	ENSTRUG00000003691	srsf1a	98	84.362	Takifugu_rubripes
ENSCPBG00000009851	-	78	91.192	ENSTNIG00000016223	srsf1a	98	84.362	Tetraodon_nigroviridis
ENSCPBG00000009851	-	74	96.739	ENSTBEG00000015378	-	63	96.739	Tupaia_belangeri
ENSCPBG00000009851	-	74	98.361	ENSTTRG00000007310	SRSF1	100	98.361	Tursiops_truncatus
ENSCPBG00000009851	-	100	98.790	ENSUAMG00000009858	SRSF1	100	98.790	Ursus_americanus
ENSCPBG00000009851	-	100	98.814	ENSUMAG00000000455	-	100	98.814	Ursus_maritimus
ENSCPBG00000009851	-	100	98.387	ENSVPAG00000010094	SRSF1	100	98.387	Vicugna_pacos
ENSCPBG00000009851	-	100	98.814	ENSVVUG00000011882	-	100	98.814	Vulpes_vulpes
ENSCPBG00000009851	-	100	96.371	ENSXETG00000008954	srsf1	100	91.760	Xenopus_tropicalis
ENSCPBG00000009851	-	78	91.710	ENSXMAG00000011766	srsf1a	98	84.774	Xiphophorus_maculatus