EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000011245 (Gene tree)
Gene ID: -
Gene Symbol: RAB42
Alias: MGC45806
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 10981 bases
Position: chrKK082935.1:1086318-1097298
Accession: 28702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000015196	MMR_HSR1	PF01926.23	2.8e-05	1	1
ENSCPBP00000015197	MMR_HSR1	PF01926.23	3e-05	1	1
ENSCPBP00000015195	MMR_HSR1	PF01926.23	3.1e-05	1	1
ENSCPBP00000015199	MMR_HSR1	PF01926.23	3.4e-05	1	1
ENSCPBP00000015192	MMR_HSR1	PF01926.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000017980	RAB42-201	603	-	ENSCPBP00000015171	200 (aa)	-	-
ENSCPBT00000018008	RAB42-205	639	-	ENSCPBP00000015197	212 (aa)	-	-
ENSCPBT00000018006	RAB42-204	624	-	ENSCPBP00000015196	207 (aa)	-	-
ENSCPBT00000018005	RAB42-203	648	-	ENSCPBP00000015195	215 (aa)	-	-
ENSCPBT00000018002	RAB42-202	579	-	ENSCPBP00000015192	192 (aa)	-	-
ENSCPBT00000018010	RAB42-206	669	-	ENSCPBP00000015199	222 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000011245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000011245's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000011245	RAB42	79	42.308	ENSCPBG00000000041	RAB6A	75	42.767
ENSCPBG00000011245	RAB42	91	31.746	ENSCPBG00000018286	RHEB	98	31.282
ENSCPBG00000011245	RAB42	97	37.824	ENSCPBG00000017056	-	88	37.824
ENSCPBG00000011245	RAB42	85	34.054	ENSCPBG00000012712	RAB5B	88	34.031
ENSCPBG00000011245	RAB42	84	36.207	ENSCPBG00000009289	-	98	33.659
ENSCPBG00000011245	RAB42	88	42.623	ENSCPBG00000012691	RAB2B	86	41.935
ENSCPBG00000011245	RAB42	80	41.401	ENSCPBG00000027619	-	77	42.405
ENSCPBG00000011245	RAB42	88	40.462	ENSCPBG00000016907	RAB15	96	37.981
ENSCPBG00000011245	RAB42	80	43.827	ENSCPBG00000001542	RAB9B	80	43.827
ENSCPBG00000011245	RAB42	90	31.638	ENSCPBG00000013941	-	98	31.217
ENSCPBG00000011245	RAB42	99	42.381	ENSCPBG00000009941	RAB14	96	41.981
ENSCPBG00000011245	RAB42	88	43.716	ENSCPBG00000023254	RAB2A	87	43.011
ENSCPBG00000011245	RAB42	85	30.899	ENSCPBG00000002289	RAB36	58	30.769
ENSCPBG00000011245	RAB42	67	33.333	ENSCPBG00000002364	ARL3	69	33.333
ENSCPBG00000011245	RAB42	98	38.164	ENSCPBG00000014614	RAB11A	94	37.799
ENSCPBG00000011245	RAB42	70	33.562	ENSCPBG00000028244	RERG	72	33.108
ENSCPBG00000011245	RAB42	77	31.788	ENSCPBG00000011715	-	64	31.788
ENSCPBG00000011245	RAB42	76	37.342	ENSCPBG00000022640	RAB23	73	35.429
ENSCPBG00000011245	RAB42	80	45.223	ENSCPBG00000013243	RAB1A	80	44.242
ENSCPBG00000011245	RAB42	88	31.148	ENSCPBG00000016544	NRAS	94	32.222
ENSCPBG00000011245	RAB42	67	31.690	ENSCPBG00000018802	-	96	31.690
ENSCPBG00000011245	RAB42	95	40.000	ENSCPBG00000016033	RAB9A	83	40.000
ENSCPBG00000011245	RAB42	89	33.714	ENSCPBG00000023927	RAB22A	85	33.714
ENSCPBG00000011245	RAB42	93	49.727	ENSCPBG00000001057	RAB39B	87	54.595
ENSCPBG00000011245	RAB42	99	37.379	ENSCPBG00000025817	RAB25	94	37.864
ENSCPBG00000011245	RAB42	84	33.908	ENSCPBG00000015094	-	90	33.908
ENSCPBG00000011245	RAB42	79	41.026	ENSCPBG00000021406	RAB6B	77	41.509
ENSCPBG00000011245	RAB42	86	36.416	ENSCPBG00000012042	RAB33A	73	35.484
ENSCPBG00000011245	RAB42	81	31.609	ENSCPBG00000020275	RAB34	64	32.335
ENSCPBG00000011245	RAB42	80	41.401	ENSCPBG00000014340	RAB41	74	42.138
ENSCPBG00000011245	RAB42	81	38.415	ENSCPBG00000014343	RAB7A	78	38.415
ENSCPBG00000011245	RAB42	88	41.040	ENSCPBG00000006855	RAB30	86	42.045
ENSCPBG00000011245	RAB42	81	32.544	ENSCPBG00000013681	MRAS	95	31.000
ENSCPBG00000011245	RAB42	86	42.604	ENSCPBG00000012631	RAB35	99	40.686
ENSCPBG00000011245	RAB42	99	54.589	ENSCPBG00000011236	-	97	54.808
ENSCPBG00000011245	RAB42	89	32.184	ENSCPBG00000022721	RRAS2	85	32.184
ENSCPBG00000011245	RAB42	83	41.212	ENSCPBG00000011914	RAB19	75	42.331
ENSCPBG00000011245	RAB42	93	40.984	ENSCPBG00000022446	RAB1B	89	40.984
ENSCPBG00000011245	RAB42	84	38.857	ENSCPBG00000028375	RAB12	72	38.674
ENSCPBG00000011245	RAB42	84	39.655	ENSCPBG00000025819	-	84	39.655
ENSCPBG00000011245	RAB42	98	32.178	ENSCPBG00000022559	RAB5A	91	32.195
ENSCPBG00000011245	RAB42	99	35.122	ENSCPBG00000027605	RAB33B	88	35.266
ENSCPBG00000011245	RAB42	89	38.251	ENSCPBG00000015839	-	88	38.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000011245	RAB42	99	59.903	ENSANAG00000035487	-	98	58.962	Aotus_nancymaae
ENSCPBG00000011245	RAB42	99	62.085	ENSBTAG00000021525	-	99	61.009	Bos_taurus
ENSCPBG00000011245	RAB42	99	62.500	ENSCGRG00001019426	Rab42	99	61.860	Cricetulus_griseus_chok1gshd
ENSCPBG00000011245	RAB42	99	60.386	ENSDORG00000023607	Rab42	98	59.624	Dipodomys_ordii
ENSCPBG00000011245	RAB42	99	61.244	ENSFCAG00000037124	-	99	60.465	Felis_catus
ENSCPBG00000011245	RAB42	99	97.059	ENSGAGG00000004921	RAB42	100	96.117	Gopherus_agassizii
ENSCPBG00000011245	RAB42	99	60.952	ENSSTOG00000000084	-	98	60.000	Ictidomys_tridecemlineatus
ENSCPBG00000011245	RAB42	99	62.679	ENSMAUG00000020223	Rab42	99	61.751	Mesocricetus_auratus
ENSCPBG00000011245	RAB42	99	61.722	ENSMICG00000029915	-	99	61.574	Microcebus_murinus
ENSCPBG00000011245	RAB42	99	63.462	ENSMOCG00000021639	Rab42	99	62.326	Microtus_ochrogaster
ENSCPBG00000011245	RAB42	99	59.223	ENSMODG00000023873	-	95	59.420	Monodelphis_domestica
ENSCPBG00000011245	RAB42	99	62.150	ENSNGAG00000015676	Rab42	98	61.644	Nannospalax_galili
ENSCPBG00000011245	RAB42	99	60.766	ENSOGAG00000006951	-	99	59.722	Otolemur_garnettii
ENSCPBG00000011245	RAB42	99	96.569	ENSPSIG00000006831	RAB42	92	96.585	Pelodiscus_sinensis
ENSCPBG00000011245	RAB42	99	59.330	ENSPCOG00000008605	-	99	59.722	Propithecus_coquereli
ENSCPBG00000011245	RAB42	99	60.976	ENSSARG00000007565	-	100	61.165	Sorex_araneus
ENSCPBG00000011245	RAB42	99	87.923	ENSSPUG00000010337	RAB42	99	87.204	Sphenodon_punctatus
ENSCPBG00000011245	RAB42	99	60.190	ENSSSCG00000030432	-	99	59.174	Sus_scrofa