EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCPBG00000011349 (Gene tree)
Gene ID
101939155
Gene Symbol
MSI1
Alias
-
Full Name
musashi RNA binding protein 1
Gene Type
protein_coding
Species
Chrysemys_picta_bellii
Status
putative
Strand
Plus strand
Length
37252 bases
Position
chrKK083009.1:2941767-2979018
Accession
7330
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCPBP00000015339RRM_1PF00076.222.7e-3412
ENSCPBP00000015339RRM_1PF00076.222.7e-3422
ENSCPBP00000015340RRM_1PF00076.223e-3412
ENSCPBP00000015340RRM_1PF00076.223e-3422
ENSCPBP00000015337RRM_1PF00076.223.3e-3412
ENSCPBP00000015337RRM_1PF00076.223.3e-3422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCPBT00000018173MSI1-2021348-ENSCPBP00000015339343 (aa)--
ENSCPBT00000018171MSI1-2011405-ENSCPBP00000015337362 (aa)--
ENSCPBT00000018175MSI1-2031370-ENSCPBP00000015340351 (aa)XP_005288748UPI000388B2B3
Gene Model
Click here to download ENSCPBG00000011349's gene model file
Pathways
Pathway IDPathway NameSource
cpic03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000011349's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCPBG00000011349MSI15446.561ENSCPBG00000008014HNRNPDL8339.689
ENSCPBG00000011349MSI15243.750ENSCPBG00000022485HNRNPA2B19439.560
ENSCPBG00000011349MSI16236.471ENSCPBG00000024059RBM385336.047
ENSCPBG00000011349MSI15048.235ENSCPBG00000008025HNRNPD7541.270
ENSCPBG00000011349MSI19283.333ENSCPBG00000009942MSI29775.983
ENSCPBG00000011349MSI15345.789ENSCPBG00000008819HNRNPAB8038.806
ENSCPBG00000011349MSI15444.444ENSCPBG00000008738HNRNPA06043.478
ENSCPBG00000011349MSI15334.667ENSCPBG00000022012TARDBP5434.337
ENSCPBG00000011349MSI15840.909ENSCPBG00000018623-5941.848
ENSCPBG00000011349MSI15142.308ENSCPBG00000022326-6443.229
ENSCPBG00000011349MSI15940.513ENSCPBG00000022951DAZAP15542.584
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCPBG00000011349MSI110095.856ENSG00000135097MSI110095.856Homo_sapiens
ENSCPBG00000011349MSI110086.686ENSAPOG00000003191MSI110086.686Acanthochromis_polyacanthus
ENSCPBG00000011349MSI110087.749ENSAPOG00000023458-10087.749Acanthochromis_polyacanthus
ENSCPBG00000011349MSI19869.452ENSAMEG00000013302MSI110073.077Ailuropoda_melanoleuca
ENSCPBG00000011349MSI18890.210ENSACIG00000017754-7987.220Amphilophus_citrinellus
ENSCPBG00000011349MSI19284.936ENSAOCG00000009031-9584.936Amphiprion_ocellaris
ENSCPBG00000011349MSI110086.686ENSAOCG00000003804MSI110086.686Amphiprion_ocellaris
ENSCPBG00000011349MSI110086.686ENSAPEG00000003245MSI110086.686Amphiprion_percula
ENSCPBG00000011349MSI110087.749ENSAPEG00000006857-8487.749Amphiprion_percula
ENSCPBG00000011349MSI110083.754ENSATEG00000017059MSI110083.754Anabas_testudineus
ENSCPBG00000011349MSI110081.127ENSATEG00000023779-10081.127Anabas_testudineus
ENSCPBG00000011349MSI110095.568ENSACAG00000002762MSI110095.568Anolis_carolinensis
ENSCPBG00000011349MSI18394.483ENSANAG00000027901-8995.185Aotus_nancymaae
ENSCPBG00000011349MSI110095.856ENSANAG00000027151MSI110095.856Aotus_nancymaae
ENSCPBG00000011349MSI110086.686ENSACLG00000011230MSI110086.686Astatotilapia_calliptera
ENSCPBG00000011349MSI110087.464ENSACLG00000000117-10088.485Astatotilapia_calliptera
ENSCPBG00000011349MSI19486.916ENSAMXG00000038960msi17984.591Astyanax_mexicanus
ENSCPBG00000011349MSI110096.188ENSBTAG00000009800MSI110096.188Bos_taurus
ENSCPBG00000011349MSI110095.856ENSCJAG00000008578MSI110095.856Callithrix_jacchus
ENSCPBG00000011349MSI110095.580ENSCAFG00000010283MSI110095.580Canis_familiaris
ENSCPBG00000011349MSI19496.141ENSCAFG00020020585MSI110096.141Canis_lupus_dingo
ENSCPBG00000011349MSI110090.515ENSCHIG00000024304MSI110090.515Capra_hircus
ENSCPBG00000011349MSI19496.024ENSTSYG00000033949MSI19596.024Carlito_syrichta
ENSCPBG00000011349MSI19495.604ENSCAPG00000003919MSI18985.942Cavia_aperea
ENSCPBG00000011349MSI110096.199ENSCPOG00000012361MSI110096.199Cavia_porcellus
ENSCPBG00000011349MSI110095.856ENSCCAG00000035567MSI110095.856Cebus_capucinus
ENSCPBG00000011349MSI110095.856ENSCATG00000030019MSI110095.856Cercocebus_atys
ENSCPBG00000011349MSI110096.199ENSCLAG00000011329MSI110096.199Chinchilla_lanigera
ENSCPBG00000011349MSI17794.946ENSCSAG00000002265MSI19694.946Chlorocebus_sabaeus
ENSCPBG00000011349MSI19496.037ENSCANG00000040651MSI110096.037Colobus_angolensis_palliatus
ENSCPBG00000011349MSI110095.856ENSCGRG00001018883Msi110095.856Cricetulus_griseus_chok1gshd
ENSCPBG00000011349MSI19496.049ENSCGRG00000002191Msi17296.049Cricetulus_griseus_crigri
ENSCPBG00000011349MSI19881.212ENSCSEG00000011032MSI110086.174Cynoglossus_semilaevis
ENSCPBG00000011349MSI110086.610ENSCSEG00000008352-10086.610Cynoglossus_semilaevis
ENSCPBG00000011349MSI110086.402ENSCSEG00000005834-10086.402Cynoglossus_semilaevis
ENSCPBG00000011349MSI110087.749ENSCVAG00000009100MSI110087.749Cyprinodon_variegatus
ENSCPBG00000011349MSI16371.364ENSCVAG00000017463-8971.364Cyprinodon_variegatus
ENSCPBG00000011349MSI15062.687ENSCVAG00000017430zgc:1107969462.687Cyprinodon_variegatus
ENSCPBG00000011349MSI110083.912ENSDARG00000010710msi110088.889Danio_rerio
ENSCPBG00000011349MSI17986.697ENSDARG00000102015CABZ01037298.18986.697Danio_rerio
ENSCPBG00000011349MSI19892.138ENSDNOG00000005713MSI19192.138Dasypus_novemcinctus
ENSCPBG00000011349MSI110091.808ENSDORG00000005610Msi19991.808Dipodomys_ordii
ENSCPBG00000011349MSI19492.073ENSETEG00000004756MSI110092.073Echinops_telfairi
ENSCPBG00000011349MSI110095.856ENSEASG00005004736MSI110095.856Equus_asinus_asinus
ENSCPBG00000011349MSI110095.856ENSECAG00000017526MSI110095.856Equus_caballus
ENSCPBG00000011349MSI19483.191ENSELUG00000023219MSI19283.191Esox_lucius
ENSCPBG00000011349MSI19484.242ENSELUG00000023280-10084.259Esox_lucius
ENSCPBG00000011349MSI110095.856ENSFCAG00000011007MSI110095.856Felis_catus
ENSCPBG00000011349MSI110099.667ENSFALG00000007574MSI110099.667Ficedula_albicollis
ENSCPBG00000011349MSI19495.732ENSFDAG00000019586MSI110095.732Fukomys_damarensis
ENSCPBG00000011349MSI110088.034ENSFHEG00000022446MSI110088.034Fundulus_heteroclitus
ENSCPBG00000011349MSI110086.686ENSFHEG00000003560-10086.686Fundulus_heteroclitus
ENSCPBG00000011349MSI110078.592ENSGMOG00000017838-10078.592Gadus_morhua
ENSCPBG00000011349MSI110086.040ENSGMOG00000001006MSI19986.040Gadus_morhua
ENSCPBG00000011349MSI19499.618ENSGALG00000007227MSI19886.189Gallus_gallus
ENSCPBG00000011349MSI110068.079ENSGAFG00000005860-10068.079Gambusia_affinis
ENSCPBG00000011349MSI110087.915ENSGAFG00000021522MSI19587.164Gambusia_affinis
ENSCPBG00000011349MSI110080.939ENSGACG00000008674-10080.939Gasterosteus_aculeatus
ENSCPBG00000011349MSI110086.895ENSGACG00000012679MSI110086.895Gasterosteus_aculeatus
ENSCPBG00000011349MSI110099.715ENSGAGG00000016037MSI110099.715Gopherus_agassizii
ENSCPBG00000011349MSI19496.178ENSGGOG00000010328MSI110096.178Gorilla_gorilla
ENSCPBG00000011349MSI110086.686ENSHBUG00000021921MSI110086.686Haplochromis_burtoni
ENSCPBG00000011349MSI110087.464ENSHBUG00000011841-10087.464Haplochromis_burtoni
ENSCPBG00000011349MSI110095.580ENSHGLG00000012782MSI110095.580Heterocephalus_glaber_female
ENSCPBG00000011349MSI19495.732ENSHGLG00100016848MSI110095.732Heterocephalus_glaber_male
ENSCPBG00000011349MSI110081.972ENSHCOG00000012067-10081.972Hippocampus_comes
ENSCPBG00000011349MSI110083.333ENSHCOG00000012019MSI110088.424Hippocampus_comes
ENSCPBG00000011349MSI110084.900ENSIPUG00000001976msi19987.417Ictalurus_punctatus
ENSCPBG00000011349MSI19496.141ENSSTOG00000009799MSI110096.141Ictidomys_tridecemlineatus
ENSCPBG00000011349MSI110095.856ENSJJAG00000010463Msi110095.856Jaculus_jaculus
ENSCPBG00000011349MSI110080.387ENSJJAG00000010643-10080.110Jaculus_jaculus
ENSCPBG00000011349MSI19885.758ENSKMAG00000019877-10090.997Kryptolebias_marmoratus
ENSCPBG00000011349MSI110087.179ENSKMAG00000011251MSI110087.179Kryptolebias_marmoratus
ENSCPBG00000011349MSI110086.686ENSLBEG00000001375-10086.686Labrus_bergylta
ENSCPBG00000011349MSI110087.749ENSLBEG00000008789MSI110087.749Labrus_bergylta
ENSCPBG00000011349MSI110087.135ENSLACG00000018287MSI110087.135Latimeria_chalumnae
ENSCPBG00000011349MSI15272.727ENSLOCG00000008618zgc:1107967172.727Lepisosteus_oculatus
ENSCPBG00000011349MSI19185.498ENSLAFG00000009412MSI110085.498Loxodonta_africana
ENSCPBG00000011349MSI110096.199ENSMFAG00000001798MSI110096.199Macaca_fascicularis
ENSCPBG00000011349MSI110094.118ENSMMUG00000031527MSI19994.118Macaca_mulatta
ENSCPBG00000011349MSI110095.856ENSMNEG00000040034MSI110095.856Macaca_nemestrina
ENSCPBG00000011349MSI19496.037ENSMLEG00000003921MSI110096.037Mandrillus_leucophaeus
ENSCPBG00000011349MSI19688.166ENSMAMG00000018426-10086.402Mastacembelus_armatus
ENSCPBG00000011349MSI110087.179ENSMAMG00000002279MSI110087.179Mastacembelus_armatus
ENSCPBG00000011349MSI110087.464ENSMZEG00005000340-10087.464Maylandia_zebra
ENSCPBG00000011349MSI110086.686ENSMZEG00005026892MSI110086.686Maylandia_zebra
ENSCPBG00000011349MSI16699.408ENSMGAG00000016518-10099.408Meleagris_gallopavo
ENSCPBG00000011349MSI17399.177ENSMAUG00000016820Msi110099.177Mesocricetus_auratus
ENSCPBG00000011349MSI110095.856ENSMICG00000033181MSI110095.856Microcebus_murinus
ENSCPBG00000011349MSI110095.580ENSMOCG00000002286Msi110095.580Microtus_ochrogaster
ENSCPBG00000011349MSI19289.369ENSMMOG00000012265-9789.369Mola_mola
ENSCPBG00000011349MSI19879.154ENSMMOG00000010492MSI19483.974Mola_mola
ENSCPBG00000011349MSI19165.060ENSMODG00000003189-10065.060Monodelphis_domestica
ENSCPBG00000011349MSI19887.576ENSMALG00000001426-10089.389Monopterus_albus
ENSCPBG00000011349MSI110087.464ENSMALG00000017889MSI110087.464Monopterus_albus
ENSCPBG00000011349MSI110095.304MGP_CAROLIEiJ_G0027626Msi19898.859Mus_caroli
ENSCPBG00000011349MSI19898.765ENSMUSG00000054256Msi19998.765Mus_musculus
ENSCPBG00000011349MSI110098.006MGP_PahariEiJ_G0024206Msi110098.006Mus_pahari
ENSCPBG00000011349MSI110095.304MGP_SPRETEiJ_G0028624Msi19898.859Mus_spretus
ENSCPBG00000011349MSI19496.141ENSMPUG00000003168MSI110096.141Mustela_putorius_furo
ENSCPBG00000011349MSI19486.310ENSMLUG00000010313MSI110086.310Myotis_lucifugus
ENSCPBG00000011349MSI19890.223ENSNGAG00000014508Msi19790.223Nannospalax_galili
ENSCPBG00000011349MSI18981.301ENSNBRG00000018012MSI19981.301Neolamprologus_brichardi
ENSCPBG00000011349MSI110087.464ENSNBRG00000000841-10087.464Neolamprologus_brichardi
ENSCPBG00000011349MSI19085.671ENSNLEG00000015636MSI110085.671Nomascus_leucogenys
ENSCPBG00000011349MSI19475.000ENSMEUG00000015759MSI110075.000Notamacropus_eugenii
ENSCPBG00000011349MSI19687.937ENSOPRG00000016879MSI110087.937Ochotona_princeps
ENSCPBG00000011349MSI19496.037ENSODEG00000006328MSI110096.037Octodon_degus
ENSCPBG00000011349MSI110084.066ENSONIG00000019452-10084.066Oreochromis_niloticus
ENSCPBG00000011349MSI110087.464ENSONIG00000011182MSI110087.464Oreochromis_niloticus
ENSCPBG00000011349MSI19495.820ENSOCUG00000027716MSI110095.820Oryctolagus_cuniculus
ENSCPBG00000011349MSI110086.402ENSORLG00000029593MSI110086.402Oryzias_latipes
ENSCPBG00000011349MSI110088.034ENSORLG00000019978-10088.034Oryzias_latipes
ENSCPBG00000011349MSI110088.034ENSORLG00020001208-7188.034Oryzias_latipes_hni
ENSCPBG00000011349MSI110086.402ENSORLG00020008266MSI19989.557Oryzias_latipes_hni
ENSCPBG00000011349MSI110088.034ENSORLG00015013672-7190.705Oryzias_latipes_hsok
ENSCPBG00000011349MSI110086.402ENSORLG00015003916MSI19989.557Oryzias_latipes_hsok
ENSCPBG00000011349MSI110088.319ENSOMEG00000017536MSI110088.319Oryzias_melastigma
ENSCPBG00000011349MSI110087.252ENSOMEG00000002272-10087.252Oryzias_melastigma
ENSCPBG00000011349MSI19992.033ENSOGAG00000003847MSI19893.539Otolemur_garnettii
ENSCPBG00000011349MSI19493.030ENSOARG00000012097MSI110093.030Ovis_aries
ENSCPBG00000011349MSI19496.037ENSPPAG00000043073MSI110096.037Pan_paniscus
ENSCPBG00000011349MSI110095.856ENSPPRG00000000370MSI110095.856Panthera_pardus
ENSCPBG00000011349MSI19496.141ENSPTIG00000008913MSI110096.141Panthera_tigris_altaica
ENSCPBG00000011349MSI110095.856ENSPTRG00000005531MSI110095.856Pan_troglodytes
ENSCPBG00000011349MSI110095.580ENSPANG00000006335MSI110095.580Papio_anubis
ENSCPBG00000011349MSI110088.604ENSPKIG00000016497MSI110088.604Paramormyrops_kingsleyae
ENSCPBG00000011349MSI110087.749ENSPKIG00000023575-10087.749Paramormyrops_kingsleyae
ENSCPBG00000011349MSI17991.703ENSPSIG00000009621-10091.703Pelodiscus_sinensis
ENSCPBG00000011349MSI19896.375ENSPSIG00000011608-9396.375Pelodiscus_sinensis
ENSCPBG00000011349MSI19484.906ENSPMGG00000000514MSI19790.301Periophthalmus_magnuspinnatus
ENSCPBG00000011349MSI19471.772ENSPMGG00000007743-9270.033Periophthalmus_magnuspinnatus
ENSCPBG00000011349MSI19891.549ENSPEMG00000010491Msi19891.549Peromyscus_maniculatus_bairdii
ENSCPBG00000011349MSI110087.749ENSPFOG00000013113MSI110087.749Poecilia_formosa
ENSCPBG00000011349MSI110086.686ENSPFOG00000008319-8686.686Poecilia_formosa
ENSCPBG00000011349MSI110087.749ENSPLAG00000014025-10087.749Poecilia_latipinna
ENSCPBG00000011349MSI110086.686ENSPLAG00000012431-9786.686Poecilia_latipinna
ENSCPBG00000011349MSI110087.749ENSPMEG00000012796MSI110087.749Poecilia_mexicana
ENSCPBG00000011349MSI110086.119ENSPMEG00000007025-9583.281Poecilia_mexicana
ENSCPBG00000011349MSI15787.129ENSPREG00000014574-10087.129Poecilia_reticulata
ENSCPBG00000011349MSI19290.301ENSPREG00000021416-9487.781Poecilia_reticulata
ENSCPBG00000011349MSI110095.028ENSPPYG00000005027MSI110095.028Pongo_abelii
ENSCPBG00000011349MSI18199.492ENSPCAG00000002300MSI17299.492Procavia_capensis
ENSCPBG00000011349MSI110095.856ENSPCOG00000017341MSI110095.856Propithecus_coquereli
ENSCPBG00000011349MSI19478.963ENSPVAG00000002225MSI110078.963Pteropus_vampyrus
ENSCPBG00000011349MSI110086.686ENSPNYG00000004379MSI110086.686Pundamilia_nyererei
ENSCPBG00000011349MSI110087.464ENSPNYG00000002529-10087.464Pundamilia_nyererei
ENSCPBG00000011349MSI110086.040ENSPNAG00000019337msi110086.040Pygocentrus_nattereri
ENSCPBG00000011349MSI19495.820ENSRNOG00000001156Msi110095.820Rattus_norvegicus
ENSCPBG00000011349MSI19496.141ENSRBIG00000036889MSI110096.141Rhinopithecus_bieti
ENSCPBG00000011349MSI19495.758ENSRROG00000041076MSI19395.758Rhinopithecus_roxellana
ENSCPBG00000011349MSI19496.199ENSSBOG00000030259MSI19896.199Saimiri_boliviensis_boliviensis
ENSCPBG00000011349MSI19484.641ENSSHAG00000006834MSI110084.641Sarcophilus_harrisii
ENSCPBG00000011349MSI110087.273ENSSFOG00015005350MSI110092.605Scleropages_formosus
ENSCPBG00000011349MSI19490.030ENSSFOG00015014964-9590.030Scleropages_formosus
ENSCPBG00000011349MSI19884.906ENSSMAG00000018824MSI19790.301Scophthalmus_maximus
ENSCPBG00000011349MSI19489.015ENSSMAG00000009156-7189.015Scophthalmus_maximus
ENSCPBG00000011349MSI110086.969ENSSDUG00000022697-10086.969Seriola_dumerili
ENSCPBG00000011349MSI110087.749ENSSDUG00000001027MSI110087.749Seriola_dumerili
ENSCPBG00000011349MSI19286.901ENSSLDG00000018706-9787.220Seriola_lalandi_dorsalis
ENSCPBG00000011349MSI110087.749ENSSLDG00000016832MSI110087.749Seriola_lalandi_dorsalis
ENSCPBG00000011349MSI110099.145ENSSPUG00000015741MSI110099.396Sphenodon_punctatus
ENSCPBG00000011349MSI15779.897ENSSPAG00000014085-10079.897Stegastes_partitus
ENSCPBG00000011349MSI15090.598ENSSPAG00000015573zgc:1107968275.625Stegastes_partitus
ENSCPBG00000011349MSI19888.788ENSSPAG00000013098-10088.788Stegastes_partitus
ENSCPBG00000011349MSI110095.580ENSSSCG00000029365MSI110095.820Sus_scrofa
ENSCPBG00000011349MSI19897.059ENSTGUG00000009534MSI110097.059Taeniopygia_guttata
ENSCPBG00000011349MSI15079.381ENSTRUG00000021586-9979.381Takifugu_rubripes
ENSCPBG00000011349MSI19283.612ENSTRUG00000015636-7983.612Takifugu_rubripes
ENSCPBG00000011349MSI18185.455ENSTRUG00000016249MSI110077.734Takifugu_rubripes
ENSCPBG00000011349MSI110082.486ENSTNIG00000011469MSI110082.486Tetraodon_nigroviridis
ENSCPBG00000011349MSI19961.364ENSTNIG00000019814-9961.364Tetraodon_nigroviridis
ENSCPBG00000011349MSI19485.348ENSTBEG00000007182MSI110085.348Tupaia_belangeri
ENSCPBG00000011349MSI17998.872ENSTTRG00000005663MSI17898.872Tursiops_truncatus
ENSCPBG00000011349MSI17193.301ENSUAMG00000015514MSI19492.237Ursus_americanus
ENSCPBG00000011349MSI19488.608ENSUMAG00000006176MSI19089.902Ursus_maritimus
ENSCPBG00000011349MSI110095.195ENSVVUG00000020993MSI110095.195Vulpes_vulpes
ENSCPBG00000011349MSI110091.738ENSXETG00000012216msi110092.593Xenopus_tropicalis
ENSCPBG00000011349MSI19277.848ENSXCOG00000017605MSI19077.848Xiphophorus_couchianus
ENSCPBG00000011349MSI110087.749ENSXMAG00000027103MSI110077.095Xiphophorus_maculatus
ENSCPBG00000011349MSI110086.402ENSXMAG00000018237-10086.402Xiphophorus_maculatus

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