EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000011949 (Gene tree)
Gene ID: -
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 3186 bases
Position: chrKK088201.1:5736318-5739503
Accession: 17286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000016193	ECR1_N	PF14382.6	9.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000019167	EXOSC1-201	502	-	ENSCPBP00000016193	121 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000011949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000011949's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000011949	EXOSC1	93	79.646	ENSG00000171311	EXOSC1	81	79.646	Homo_sapiens
ENSCPBG00000011949	EXOSC1	88	67.290	ENSAPOG00000007822	exosc1	55	67.290	Acanthochromis_polyacanthus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSAMEG00000000129	EXOSC1	54	81.132	Ailuropoda_melanoleuca
ENSCPBG00000011949	EXOSC1	88	67.925	ENSACIG00000018956	exosc1	52	67.925	Amphilophus_citrinellus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSAOCG00000010699	exosc1	61	67.647	Amphiprion_ocellaris
ENSCPBG00000011949	EXOSC1	84	64.706	ENSAPEG00000012690	exosc1	60	64.706	Amphiprion_percula
ENSCPBG00000011949	EXOSC1	88	66.355	ENSATEG00000018683	exosc1	55	66.355	Anabas_testudineus
ENSCPBG00000011949	EXOSC1	88	82.075	ENSACAG00000002101	EXOSC1	54	82.075	Anolis_carolinensis
ENSCPBG00000011949	EXOSC1	93	80.357	ENSANAG00000034669	EXOSC1	68	80.357	Aotus_nancymaae
ENSCPBG00000011949	EXOSC1	88	67.290	ENSACLG00000021243	exosc1	55	67.290	Astatotilapia_calliptera
ENSCPBG00000011949	EXOSC1	88	71.028	ENSAMXG00000011116	exosc1	55	71.028	Astyanax_mexicanus
ENSCPBG00000011949	EXOSC1	88	82.075	ENSBTAG00000012699	EXOSC1	54	82.075	Bos_taurus
ENSCPBG00000011949	EXOSC1	83	30.556	WBGene00012966	exos-1	52	30.556	Caenorhabditis_elegans
ENSCPBG00000011949	EXOSC1	93	81.250	ENSCJAG00000016586	EXOSC1	68	81.250	Callithrix_jacchus
ENSCPBG00000011949	EXOSC1	88	80.189	ENSCAFG00000009068	EXOSC1	51	80.189	Canis_familiaris
ENSCPBG00000011949	EXOSC1	88	80.189	ENSCAFG00020006002	EXOSC1	51	80.189	Canis_lupus_dingo
ENSCPBG00000011949	EXOSC1	88	82.075	ENSCHIG00000015253	EXOSC1	54	82.075	Capra_hircus
ENSCPBG00000011949	EXOSC1	93	78.761	ENSTSYG00000000760	EXOSC1	81	78.761	Carlito_syrichta
ENSCPBG00000011949	EXOSC1	88	82.075	ENSCPOG00000001173	EXOSC1	54	82.075	Cavia_porcellus
ENSCPBG00000011949	EXOSC1	89	46.364	ENSCCAG00000023986	EXOSC1	64	46.364	Cebus_capucinus
ENSCPBG00000011949	EXOSC1	93	79.646	ENSCATG00000034114	EXOSC1	81	79.646	Cercocebus_atys
ENSCPBG00000011949	EXOSC1	88	82.075	ENSCLAG00000002463	EXOSC1	54	82.075	Chinchilla_lanigera
ENSCPBG00000011949	EXOSC1	88	82.075	ENSCSAG00000005870	EXOSC1	54	82.075	Chlorocebus_sabaeus
ENSCPBG00000011949	EXOSC1	86	60.577	ENSCHOG00000006477	EXOSC1	56	60.577	Choloepus_hoffmanni
ENSCPBG00000011949	EXOSC1	88	45.794	ENSCING00000022734	-	51	45.794	Ciona_intestinalis
ENSCPBG00000011949	EXOSC1	88	47.664	ENSCSAVG00000010865	-	55	47.664	Ciona_savignyi
ENSCPBG00000011949	EXOSC1	93	79.646	ENSCANG00000034159	EXOSC1	81	79.646	Colobus_angolensis_palliatus
ENSCPBG00000011949	EXOSC1	88	83.962	ENSCGRG00001000335	Exosc1	54	83.962	Cricetulus_griseus_chok1gshd
ENSCPBG00000011949	EXOSC1	88	83.962	ENSCGRG00000011602	Exosc1	54	83.962	Cricetulus_griseus_crigri
ENSCPBG00000011949	EXOSC1	88	67.290	ENSCVAG00000016748	exosc1	60	67.290	Cyprinodon_variegatus
ENSCPBG00000011949	EXOSC1	88	71.963	ENSDARG00000059841	exosc1	55	71.963	Danio_rerio
ENSCPBG00000011949	EXOSC1	88	82.075	ENSDNOG00000007983	EXOSC1	72	82.075	Dasypus_novemcinctus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSDORG00000016528	Exosc1	54	81.132	Dipodomys_ordii
ENSCPBG00000011949	EXOSC1	88	37.037	FBgn0032346	Csl4	53	37.037	Drosophila_melanogaster
ENSCPBG00000011949	EXOSC1	88	81.132	ENSETEG00000002469	-	54	81.132	Echinops_telfairi
ENSCPBG00000011949	EXOSC1	88	50.909	ENSEBUG00000008164	exosc1	56	50.909	Eptatretus_burgeri
ENSCPBG00000011949	EXOSC1	93	65.487	ENSEASG00005008684	EXOSC1	68	65.487	Equus_asinus_asinus
ENSCPBG00000011949	EXOSC1	93	65.487	ENSECAG00000010621	EXOSC1	68	65.487	Equus_caballus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSEEUG00000005647	EXOSC1	54	81.132	Erinaceus_europaeus
ENSCPBG00000011949	EXOSC1	92	80.180	ENSFCAG00000040563	EXOSC1	79	80.180	Felis_catus
ENSCPBG00000011949	EXOSC1	88	82.075	ENSFALG00000008450	EXOSC1	54	82.075	Ficedula_albicollis
ENSCPBG00000011949	EXOSC1	88	82.075	ENSFDAG00000000846	EXOSC1	54	82.075	Fukomys_damarensis
ENSCPBG00000011949	EXOSC1	88	66.355	ENSFHEG00000009154	exosc1	55	66.355	Fundulus_heteroclitus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSGMOG00000008993	exosc1	55	67.290	Gadus_morhua
ENSCPBG00000011949	EXOSC1	88	65.421	ENSGAFG00000010265	exosc1	52	65.421	Gambusia_affinis
ENSCPBG00000011949	EXOSC1	88	69.811	ENSGACG00000018936	exosc1	55	69.811	Gasterosteus_aculeatus
ENSCPBG00000011949	EXOSC1	88	100.000	ENSGAGG00000019192	EXOSC1	54	100.000	Gopherus_agassizii
ENSCPBG00000011949	EXOSC1	93	59.292	ENSGGOG00000003099	EXOSC1	77	59.292	Gorilla_gorilla
ENSCPBG00000011949	EXOSC1	91	67.273	ENSHBUG00000017857	exosc1	57	67.273	Haplochromis_burtoni
ENSCPBG00000011949	EXOSC1	88	81.132	ENSHGLG00000016927	EXOSC1	54	81.132	Heterocephalus_glaber_female
ENSCPBG00000011949	EXOSC1	88	81.132	ENSHGLG00100012208	EXOSC1	54	81.132	Heterocephalus_glaber_male
ENSCPBG00000011949	EXOSC1	88	68.224	ENSHCOG00000019882	exosc1	55	68.224	Hippocampus_comes
ENSCPBG00000011949	EXOSC1	88	70.093	ENSIPUG00000007685	exosc1	55	70.093	Ictalurus_punctatus
ENSCPBG00000011949	EXOSC1	88	69.159	ENSSTOG00000029860	-	81	69.159	Ictidomys_tridecemlineatus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSSTOG00000006615	EXOSC1	54	81.132	Ictidomys_tridecemlineatus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSJJAG00000013311	Exosc1	54	81.132	Jaculus_jaculus
ENSCPBG00000011949	EXOSC1	88	66.355	ENSLBEG00000011448	exosc1	55	66.355	Labrus_bergylta
ENSCPBG00000011949	EXOSC1	88	81.132	ENSLAFG00000015983	EXOSC1	54	81.132	Loxodonta_africana
ENSCPBG00000011949	EXOSC1	93	79.646	ENSMFAG00000001493	EXOSC1	81	79.646	Macaca_fascicularis
ENSCPBG00000011949	EXOSC1	93	79.646	ENSMMUG00000020028	EXOSC1	81	79.646	Macaca_mulatta
ENSCPBG00000011949	EXOSC1	93	79.646	ENSMNEG00000029816	EXOSC1	81	79.646	Macaca_nemestrina
ENSCPBG00000011949	EXOSC1	86	73.636	ENSMLEG00000027643	EXOSC1	61	73.636	Mandrillus_leucophaeus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSMAMG00000012200	exosc1	55	67.290	Mastacembelus_armatus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSMZEG00005007042	exosc1	55	67.290	Maylandia_zebra
ENSCPBG00000011949	EXOSC1	93	78.761	ENSMICG00000007664	EXOSC1	60	80.374	Microcebus_murinus
ENSCPBG00000011949	EXOSC1	88	83.962	ENSMOCG00000006004	-	54	83.962	Microtus_ochrogaster
ENSCPBG00000011949	EXOSC1	87	76.190	ENSMOCG00000017124	-	52	76.190	Microtus_ochrogaster
ENSCPBG00000011949	EXOSC1	88	77.358	ENSMODG00000004213	EXOSC1	54	77.358	Monodelphis_domestica
ENSCPBG00000011949	EXOSC1	88	67.925	ENSMALG00000007061	exosc1	53	67.925	Monopterus_albus
ENSCPBG00000011949	EXOSC1	88	83.019	MGP_CAROLIEiJ_G0022959	Exosc1	54	83.019	Mus_caroli
ENSCPBG00000011949	EXOSC1	88	83.019	ENSMUSG00000034321	Exosc1	54	83.019	Mus_musculus
ENSCPBG00000011949	EXOSC1	88	83.962	MGP_PahariEiJ_G0014449	Exosc1	54	83.962	Mus_pahari
ENSCPBG00000011949	EXOSC1	88	83.019	MGP_SPRETEiJ_G0023880	Exosc1	54	83.019	Mus_spretus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSMPUG00000017044	EXOSC1	54	81.132	Mustela_putorius_furo
ENSCPBG00000011949	EXOSC1	88	80.189	ENSMLUG00000009228	EXOSC1	54	80.189	Myotis_lucifugus
ENSCPBG00000011949	EXOSC1	88	83.962	ENSNGAG00000022033	Exosc1	54	83.962	Nannospalax_galili
ENSCPBG00000011949	EXOSC1	93	78.761	ENSNLEG00000013872	EXOSC1	81	78.761	Nomascus_leucogenys
ENSCPBG00000011949	EXOSC1	87	78.095	ENSMEUG00000002246	EXOSC1	91	78.095	Notamacropus_eugenii
ENSCPBG00000011949	EXOSC1	88	83.019	ENSOPRG00000005065	EXOSC1	54	83.019	Ochotona_princeps
ENSCPBG00000011949	EXOSC1	88	82.075	ENSODEG00000016709	EXOSC1	54	82.075	Octodon_degus
ENSCPBG00000011949	EXOSC1	88	67.925	ENSONIG00000017683	exosc1	54	67.925	Oreochromis_niloticus
ENSCPBG00000011949	EXOSC1	88	83.178	ENSOCUG00000011898	-	55	83.178	Oryctolagus_cuniculus
ENSCPBG00000011949	EXOSC1	88	79.245	ENSOCUG00000026461	-	54	79.245	Oryctolagus_cuniculus
ENSCPBG00000011949	EXOSC1	88	69.159	ENSORLG00000011595	exosc1	55	69.159	Oryzias_latipes
ENSCPBG00000011949	EXOSC1	88	69.159	ENSORLG00020005831	exosc1	55	69.159	Oryzias_latipes_hni
ENSCPBG00000011949	EXOSC1	88	69.159	ENSORLG00015004317	exosc1	55	69.159	Oryzias_latipes_hsok
ENSCPBG00000011949	EXOSC1	88	83.019	ENSOGAG00000016259	EXOSC1	54	83.019	Otolemur_garnettii
ENSCPBG00000011949	EXOSC1	88	81.132	ENSOARG00000010136	EXOSC1	54	81.132	Ovis_aries
ENSCPBG00000011949	EXOSC1	91	80.000	ENSPPRG00000023366	EXOSC1	79	80.000	Panthera_pardus
ENSCPBG00000011949	EXOSC1	92	80.180	ENSPTIG00000017701	EXOSC1	79	80.180	Panthera_tigris_altaica
ENSCPBG00000011949	EXOSC1	93	79.646	ENSPTRG00000002808	EXOSC1	81	79.646	Pan_troglodytes
ENSCPBG00000011949	EXOSC1	93	79.646	ENSPANG00000021324	EXOSC1	81	79.646	Papio_anubis
ENSCPBG00000011949	EXOSC1	88	70.093	ENSPKIG00000016037	exosc1	55	70.093	Paramormyrops_kingsleyae
ENSCPBG00000011949	EXOSC1	88	83.962	ENSPEMG00000010710	-	54	83.962	Peromyscus_maniculatus_bairdii
ENSCPBG00000011949	EXOSC1	88	63.551	ENSPMAG00000000195	exosc1	55	63.551	Petromyzon_marinus
ENSCPBG00000011949	EXOSC1	88	77.358	ENSPCIG00000002210	EXOSC1	54	77.358	Phascolarctos_cinereus
ENSCPBG00000011949	EXOSC1	88	64.486	ENSPFOG00000006755	exosc1	52	64.486	Poecilia_formosa
ENSCPBG00000011949	EXOSC1	88	64.486	ENSPLAG00000005880	exosc1	55	64.486	Poecilia_latipinna
ENSCPBG00000011949	EXOSC1	88	64.486	ENSPMEG00000015598	exosc1	52	64.486	Poecilia_mexicana
ENSCPBG00000011949	EXOSC1	88	82.075	ENSPPYG00000002531	EXOSC1	54	82.075	Pongo_abelii
ENSCPBG00000011949	EXOSC1	88	80.189	ENSPCAG00000009135	EXOSC1	54	80.189	Procavia_capensis
ENSCPBG00000011949	EXOSC1	77	80.645	ENSPCOG00000027539	EXOSC1	73	80.645	Propithecus_coquereli
ENSCPBG00000011949	EXOSC1	88	81.132	ENSPVAG00000003372	EXOSC1	54	81.132	Pteropus_vampyrus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSPNYG00000021745	exosc1	55	67.290	Pundamilia_nyererei
ENSCPBG00000011949	EXOSC1	88	69.159	ENSPNAG00000001944	exosc1	55	69.159	Pygocentrus_nattereri
ENSCPBG00000011949	EXOSC1	88	83.962	ENSRNOG00000048708	Exosc1	54	83.962	Rattus_norvegicus
ENSCPBG00000011949	EXOSC1	93	79.646	ENSRBIG00000035618	EXOSC1	81	79.646	Rhinopithecus_bieti
ENSCPBG00000011949	EXOSC1	93	79.646	ENSRROG00000032589	EXOSC1	81	79.646	Rhinopithecus_roxellana
ENSCPBG00000011949	EXOSC1	93	80.357	ENSSBOG00000000359	EXOSC1	68	80.357	Saimiri_boliviensis_boliviensis
ENSCPBG00000011949	EXOSC1	92	66.667	ENSSFOG00015009069	exosc1	55	69.159	Scleropages_formosus
ENSCPBG00000011949	EXOSC1	88	66.355	ENSSFOG00015016289	-	55	66.355	Scleropages_formosus
ENSCPBG00000011949	EXOSC1	88	68.224	ENSSMAG00000003721	exosc1	55	68.224	Scophthalmus_maximus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSSDUG00000002993	exosc1	60	67.290	Seriola_dumerili
ENSCPBG00000011949	EXOSC1	88	67.290	ENSSLDG00000025181	exosc1	60	67.290	Seriola_lalandi_dorsalis
ENSCPBG00000011949	EXOSC1	88	59.434	ENSSARG00000000162	EXOSC1	54	59.434	Sorex_araneus
ENSCPBG00000011949	EXOSC1	88	81.132	ENSSPUG00000012263	EXOSC1	54	81.132	Sphenodon_punctatus
ENSCPBG00000011949	EXOSC1	88	67.290	ENSSPAG00000016792	exosc1	50	67.290	Stegastes_partitus
ENSCPBG00000011949	EXOSC1	88	80.189	ENSSSCG00000010518	EXOSC1	50	80.189	Sus_scrofa
ENSCPBG00000011949	EXOSC1	88	80.189	ENSTGUG00000009692	EXOSC1	55	80.189	Taeniopygia_guttata
ENSCPBG00000011949	EXOSC1	88	66.038	ENSTRUG00000007706	exosc1	60	65.421	Takifugu_rubripes
ENSCPBG00000011949	EXOSC1	88	66.038	ENSTNIG00000014079	exosc1	54	66.038	Tetraodon_nigroviridis
ENSCPBG00000011949	EXOSC1	88	71.698	ENSTBEG00000006011	EXOSC1	55	71.698	Tupaia_belangeri
ENSCPBG00000011949	EXOSC1	87	80.952	ENSTTRG00000009887	EXOSC1	57	80.952	Tursiops_truncatus
ENSCPBG00000011949	EXOSC1	88	68.868	ENSXETG00000003434	exosc1	55	68.868	Xenopus_tropicalis