EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000011966 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 41906 bases
Position: chrKK083292.1:124588-166493
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000017228	ResIII	PF04851.15	1.7e-08	1	1
ENSCPBP00000017204	ResIII	PF04851.15	1.8e-08	1	1
ENSCPBP00000017202	ResIII	PF04851.15	2e-08	1	1
ENSCPBP00000017200	ResIII	PF04851.15	3e-08	1	1
ENSCPBP00000017199	ResIII	PF04851.15	3.3e-08	1	1
ENSCPBP00000017195	ResIII	PF04851.15	3.4e-08	1	1
ENSCPBP00000017197	ResIII	PF04851.15	3.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000020351	CHD3-202	4962	-	ENSCPBP00000017197	1653 (aa)	-	-
ENSCPBT00000020353	CHD3-203	4767	-	ENSCPBP00000017199	1588 (aa)	-	-
ENSCPBT00000020354	CHD3-204	4578	-	ENSCPBP00000017200	1525 (aa)	-	-
ENSCPBT00000020356	CHD3-205	3654	-	ENSCPBP00000017202	1217 (aa)	-	-
ENSCPBT00000020358	CHD3-206	3069	-	ENSCPBP00000017204	1022 (aa)	-	-
ENSCPBT00000020349	CHD3-201	5100	-	ENSCPBP00000017195	1699 (aa)	-	-
ENSCPBT00000020383	CHD3-207	3198	-	ENSCPBP00000017228	1065 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000011966's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000011966's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000011966	CHD3	99	72.051	ENSCPBG00000019363	CHD5	93	72.054
ENSCPBG00000011966	CHD3	90	84.354	ENSCPBG00000027716	-	86	71.735
ENSCPBG00000011966	CHD3	62	39.740	ENSCPBG00000015831	CHD1	69	40.746
ENSCPBG00000011966	CHD3	60	43.083	ENSCPBG00000018049	-	81	42.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000011966	CHD3	99	87.687	ENSG00000170004	CHD3	99	82.027	Homo_sapiens
ENSCPBG00000011966	CHD3	99	78.313	ENSAPOG00000005614	chd3	96	78.576	Acanthochromis_polyacanthus
ENSCPBG00000011966	CHD3	72	87.581	ENSAMEG00000003025	-	90	87.409	Ailuropoda_melanoleuca
ENSCPBG00000011966	CHD3	99	79.635	ENSACIG00000019671	chd3	99	79.659	Amphilophus_citrinellus
ENSCPBG00000011966	CHD3	99	80.133	ENSAOCG00000023784	chd3	99	80.400	Amphiprion_ocellaris
ENSCPBG00000011966	CHD3	95	84.456	ENSAPEG00000006341	chd3	79	93.151	Amphiprion_percula
ENSCPBG00000011966	CHD3	95	86.528	ENSATEG00000000848	chd3	99	77.062	Anabas_testudineus
ENSCPBG00000011966	CHD3	99	87.603	ENSACAG00000004276	CHD3	87	83.791	Anolis_carolinensis
ENSCPBG00000011966	CHD3	99	86.714	ENSANAG00000034323	CHD3	92	84.688	Aotus_nancymaae
ENSCPBG00000011966	CHD3	99	77.670	ENSACLG00000009222	chd3	93	77.788	Astatotilapia_calliptera
ENSCPBG00000011966	CHD3	99	86.572	ENSBTAG00000014377	CHD3	86	86.447	Bos_taurus
ENSCPBG00000011966	CHD3	99	87.627	ENSCJAG00000014766	CHD3	89	84.528	Callithrix_jacchus
ENSCPBG00000011966	CHD3	99	86.420	ENSCAFG00000016859	CHD3	89	83.035	Canis_familiaris
ENSCPBG00000011966	CHD3	99	87.388	ENSCAFG00020007422	CHD3	92	86.051	Canis_lupus_dingo
ENSCPBG00000011966	CHD3	99	86.655	ENSCHIG00000016737	CHD3	86	86.529	Capra_hircus
ENSCPBG00000011966	CHD3	99	87.627	ENSTSYG00000035658	CHD3	92	84.245	Carlito_syrichta
ENSCPBG00000011966	CHD3	99	83.529	ENSCAPG00000014864	CHD3	89	80.381	Cavia_aperea
ENSCPBG00000011966	CHD3	99	86.471	ENSCPOG00000022653	CHD3	89	83.184	Cavia_porcellus
ENSCPBG00000011966	CHD3	99	87.627	ENSCCAG00000034792	CHD3	89	83.092	Cebus_capucinus
ENSCPBG00000011966	CHD3	99	87.784	ENSCATG00000041717	CHD3	89	84.423	Cercocebus_atys
ENSCPBG00000011966	CHD3	99	87.507	ENSCLAG00000010523	CHD3	91	83.361	Chinchilla_lanigera
ENSCPBG00000011966	CHD3	99	86.859	ENSCSAG00000011122	CHD3	90	82.878	Chlorocebus_sabaeus
ENSCPBG00000011966	CHD3	99	87.701	ENSCANG00000037641	CHD3	92	83.672	Colobus_angolensis_palliatus
ENSCPBG00000011966	CHD3	99	87.299	ENSCGRG00001011306	Chd3	91	82.791	Cricetulus_griseus_chok1gshd
ENSCPBG00000011966	CHD3	95	88.427	ENSCGRG00000007878	Chd3	88	80.899	Cricetulus_griseus_crigri
ENSCPBG00000011966	CHD3	92	90.667	ENSCSEG00000004489	chd3	89	93.151	Cynoglossus_semilaevis
ENSCPBG00000011966	CHD3	92	91.892	ENSCVAG00000007293	chd3	96	75.281	Cyprinodon_variegatus
ENSCPBG00000011966	CHD3	88	93.197	ENSDARG00000021405	chd3	92	78.301	Danio_rerio
ENSCPBG00000011966	CHD3	83	96.044	ENSDNOG00000047846	CHD3	69	96.044	Dasypus_novemcinctus
ENSCPBG00000011966	CHD3	99	86.252	ENSDORG00000010713	Chd3	90	84.418	Dipodomys_ordii
ENSCPBG00000011966	CHD3	99	82.263	ENSETEG00000017733	CHD3	88	82.134	Echinops_telfairi
ENSCPBG00000011966	CHD3	70	86.395	ENSEBUG00000008310	chd3	80	86.301	Eptatretus_burgeri
ENSCPBG00000011966	CHD3	99	86.800	ENSEASG00005019360	CHD3	92	86.792	Equus_asinus_asinus
ENSCPBG00000011966	CHD3	99	86.655	ENSECAG00000010051	CHD3	92	86.647	Equus_caballus
ENSCPBG00000011966	CHD3	92	97.561	ENSEEUG00000015205	CHD3	82	97.561	Erinaceus_europaeus
ENSCPBG00000011966	CHD3	92	91.946	ENSELUG00000019499	chd3	99	92.466	Esox_lucius
ENSCPBG00000011966	CHD3	99	85.546	ENSFCAG00000009629	CHD3	86	83.072	Felis_catus
ENSCPBG00000011966	CHD3	99	86.588	ENSFDAG00000008220	CHD3	86	86.521	Fukomys_damarensis
ENSCPBG00000011966	CHD3	89	91.156	ENSGMOG00000013599	chd3	79	91.096	Gadus_morhua
ENSCPBG00000011966	CHD3	92	79.019	ENSGAFG00000004055	chd3	98	80.479	Gambusia_affinis
ENSCPBG00000011966	CHD3	99	73.832	ENSGACG00000019275	chd3	91	71.102	Gasterosteus_aculeatus
ENSCPBG00000011966	CHD3	87	96.687	ENSGAGG00000013164	CHD3	97	96.687	Gopherus_agassizii
ENSCPBG00000011966	CHD3	99	87.567	ENSGGOG00000013496	CHD3	92	83.498	Gorilla_gorilla
ENSCPBG00000011966	CHD3	99	87.507	ENSHGLG00000012017	CHD3	90	83.352	Heterocephalus_glaber_female
ENSCPBG00000011966	CHD3	80	97.561	ENSHGLG00100013902	CHD3	77	97.561	Heterocephalus_glaber_male
ENSCPBG00000011966	CHD3	99	73.861	ENSHCOG00000010170	chd3	88	74.480	Hippocampus_comes
ENSCPBG00000011966	CHD3	88	92.617	ENSIPUG00000003271	chd3	93	78.799	Ictalurus_punctatus
ENSCPBG00000011966	CHD3	99	87.821	ENSSTOG00000025907	CHD3	90	84.747	Ictidomys_tridecemlineatus
ENSCPBG00000011966	CHD3	99	87.089	ENSJJAG00000017633	Chd3	90	83.798	Jaculus_jaculus
ENSCPBG00000011966	CHD3	92	95.238	ENSKMAG00000019292	chd3	90	77.540	Kryptolebias_marmoratus
ENSCPBG00000011966	CHD3	99	74.207	ENSLBEG00000028485	chd3	89	74.106	Labrus_bergylta
ENSCPBG00000011966	CHD3	99	77.460	ENSLACG00000008031	CHD3	91	75.493	Latimeria_chalumnae
ENSCPBG00000011966	CHD3	94	84.016	ENSLOCG00000013965	chd3	88	77.809	Lepisosteus_oculatus
ENSCPBG00000011966	CHD3	91	93.508	ENSLAFG00000000572	CHD3	90	85.276	Loxodonta_africana
ENSCPBG00000011966	CHD3	99	87.725	ENSMFAG00000020113	CHD3	92	84.906	Macaca_fascicularis
ENSCPBG00000011966	CHD3	99	84.973	ENSMMUG00000022221	CHD3	89	81.732	Macaca_mulatta
ENSCPBG00000011966	CHD3	99	87.784	ENSMNEG00000001728	CHD3	92	86.262	Macaca_nemestrina
ENSCPBG00000011966	CHD3	99	87.784	ENSMLEG00000032249	CHD3	89	84.423	Mandrillus_leucophaeus
ENSCPBG00000011966	CHD3	99	79.673	ENSMAMG00000000564	chd3	93	93.151	Mastacembelus_armatus
ENSCPBG00000011966	CHD3	99	87.037	ENSMAUG00000013873	Chd3	92	83.550	Mesocricetus_auratus
ENSCPBG00000011966	CHD3	99	87.110	ENSMICG00000008741	CHD3	87	83.576	Microcebus_murinus
ENSCPBG00000011966	CHD3	99	87.276	ENSMOCG00000004848	Chd3	91	83.759	Microtus_ochrogaster
ENSCPBG00000011966	CHD3	94	82.484	ENSMMOG00000012699	chd3	86	93.151	Mola_mola
ENSCPBG00000011966	CHD3	99	87.764	ENSMODG00000007509	CHD3	92	87.749	Monodelphis_domestica
ENSCPBG00000011966	CHD3	99	87.321	MGP_CAROLIEiJ_G0016564	Chd3	93	83.750	Mus_caroli
ENSCPBG00000011966	CHD3	99	87.097	ENSMUSG00000018474	Chd3	93	83.750	Mus_musculus
ENSCPBG00000011966	CHD3	99	87.627	MGP_PahariEiJ_G0017695	Chd3	93	83.854	Mus_pahari
ENSCPBG00000011966	CHD3	99	87.157	MGP_SPRETEiJ_G0017400	Chd3	93	83.807	Mus_spretus
ENSCPBG00000011966	CHD3	93	87.413	ENSMPUG00000008861	CHD3	92	87.278	Mustela_putorius_furo
ENSCPBG00000011966	CHD3	99	86.101	ENSMLUG00000014643	-	85	86.682	Myotis_lucifugus
ENSCPBG00000011966	CHD3	99	86.647	ENSNGAG00000000773	Chd3	89	83.249	Nannospalax_galili
ENSCPBG00000011966	CHD3	99	77.824	ENSNBRG00000000636	chd3	97	78.928	Neolamprologus_brichardi
ENSCPBG00000011966	CHD3	99	85.075	ENSNLEG00000009770	CHD3	91	84.032	Nomascus_leucogenys
ENSCPBG00000011966	CHD3	87	98.795	ENSMEUG00000005852	CHD3	78	84.816	Notamacropus_eugenii
ENSCPBG00000011966	CHD3	99	86.187	ENSOPRG00000011069	CHD3	91	86.060	Ochotona_princeps
ENSCPBG00000011966	CHD3	99	86.623	ENSODEG00000017785	CHD3	90	83.352	Octodon_degus
ENSCPBG00000011966	CHD3	93	93.878	ENSONIG00000009292	chd3	89	80.095	Oreochromis_niloticus
ENSCPBG00000011966	CHD3	99	83.576	ENSOCUG00000029299	CHD3	89	80.308	Oryctolagus_cuniculus
ENSCPBG00000011966	CHD3	95	77.778	ENSORLG00000007107	chd3	93	76.387	Oryzias_latipes
ENSCPBG00000011966	CHD3	97	75.619	ENSORLG00020008387	chd3	94	77.122	Oryzias_latipes_hni
ENSCPBG00000011966	CHD3	88	81.818	ENSOMEG00000013691	chd3	98	80.596	Oryzias_melastigma
ENSCPBG00000011966	CHD3	99	86.420	ENSOGAG00000003216	CHD3	90	83.305	Otolemur_garnettii
ENSCPBG00000011966	CHD3	99	85.544	ENSOARG00000017855	CHD3	89	81.338	Ovis_aries
ENSCPBG00000011966	CHD3	99	85.554	ENSPPAG00000032886	CHD3	92	83.324	Pan_paniscus
ENSCPBG00000011966	CHD3	99	86.834	ENSPPRG00000000626	CHD3	89	84.082	Panthera_pardus
ENSCPBG00000011966	CHD3	99	87.687	ENSPTRG00000008714	CHD3	92	83.672	Pan_troglodytes
ENSCPBG00000011966	CHD3	99	86.875	ENSPANG00000023938	CHD3	92	84.965	Papio_anubis
ENSCPBG00000011966	CHD3	96	93.878	ENSPKIG00000006305	chd3	84	93.836	Paramormyrops_kingsleyae
ENSCPBG00000011966	CHD3	81	93.592	ENSPSIG00000010177	CHD3	98	97.070	Pelodiscus_sinensis
ENSCPBG00000011966	CHD3	99	86.142	ENSPEMG00000014262	Chd3	90	82.679	Peromyscus_maniculatus_bairdii
ENSCPBG00000011966	CHD3	99	87.748	ENSPCIG00000005442	CHD3	93	87.253	Phascolarctos_cinereus
ENSCPBG00000011966	CHD3	93	93.197	ENSPFOG00000012464	chd3	79	93.151	Poecilia_formosa
ENSCPBG00000011966	CHD3	93	93.197	ENSPLAG00000002887	chd3	88	93.151	Poecilia_latipinna
ENSCPBG00000011966	CHD3	94	77.559	ENSPMEG00000016725	chd3	90	77.593	Poecilia_mexicana
ENSCPBG00000011966	CHD3	99	79.075	ENSPREG00000011044	chd3	91	78.388	Poecilia_reticulata
ENSCPBG00000011966	CHD3	99	83.637	ENSPPYG00000007940	CHD3	91	80.067	Pongo_abelii
ENSCPBG00000011966	CHD3	88	95.817	ENSPCAG00000004350	CHD3	87	84.339	Procavia_capensis
ENSCPBG00000011966	CHD3	99	87.926	ENSPCOG00000020952	CHD3	89	83.595	Propithecus_coquereli
ENSCPBG00000011966	CHD3	90	85.462	ENSPVAG00000016344	CHD3	73	88.319	Pteropus_vampyrus
ENSCPBG00000011966	CHD3	96	83.673	ENSPNAG00000020393	chd3	90	92.466	Pygocentrus_nattereri
ENSCPBG00000011966	CHD3	99	86.404	ENSRNOG00000009722	Chd3	92	86.160	Rattus_norvegicus
ENSCPBG00000011966	CHD3	99	85.015	ENSRBIG00000033562	CHD3	92	83.856	Rhinopithecus_bieti
ENSCPBG00000011966	CHD3	99	87.784	ENSRROG00000029554	CHD3	92	84.655	Rhinopithecus_roxellana
ENSCPBG00000011966	CHD3	99	87.747	ENSSBOG00000020719	CHD3	92	86.101	Saimiri_boliviensis_boliviensis
ENSCPBG00000011966	CHD3	99	87.605	ENSSHAG00000014412	CHD3	91	84.518	Sarcophilus_harrisii
ENSCPBG00000011966	CHD3	84	92.517	ENSSFOG00015023123	chd3	92	75.406	Scleropages_formosus
ENSCPBG00000011966	CHD3	94	90.476	ENSSMAG00000006451	chd3	99	80.061	Scophthalmus_maximus
ENSCPBG00000011966	CHD3	95	79.203	ENSSDUG00000005792	chd3	96	79.767	Seriola_dumerili
ENSCPBG00000011966	CHD3	97	93.197	ENSSPAG00000013694	chd3	99	79.098	Stegastes_partitus
ENSCPBG00000011966	CHD3	99	87.882	ENSSSCG00000021363	CHD3	99	86.565	Sus_scrofa
ENSCPBG00000011966	CHD3	96	79.345	ENSTRUG00000014990	chd3	89	80.136	Takifugu_rubripes
ENSCPBG00000011966	CHD3	99	78.349	ENSTNIG00000012998	chd3	86	77.977	Tetraodon_nigroviridis
ENSCPBG00000011966	CHD3	72	96.651	ENSTBEG00000011454	-	68	96.651	Tupaia_belangeri
ENSCPBG00000011966	CHD3	94	92.598	ENSTTRG00000010295	CHD3	87	84.605	Tursiops_truncatus
ENSCPBG00000011966	CHD3	99	84.751	ENSUAMG00000005475	CHD3	92	85.387	Ursus_americanus
ENSCPBG00000011966	CHD3	74	96.904	ENSVPAG00000010794	-	59	96.904	Vicugna_pacos
ENSCPBG00000011966	CHD3	99	87.388	ENSVVUG00000028011	CHD3	89	86.051	Vulpes_vulpes
ENSCPBG00000011966	CHD3	99	76.710	ENSXETG00000012991	chd3	83	76.519	Xenopus_tropicalis
ENSCPBG00000011966	CHD3	94	75.808	ENSXCOG00000000809	chd3	92	83.447	Xiphophorus_couchianus
ENSCPBG00000011966	CHD3	96	82.099	ENSXMAG00000016035	chd3	97	93.151	Xiphophorus_maculatus