EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000012407 (Gene tree)
Gene ID: 101939630
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 16535 bases
Position: chrKK083367.1:121887-138421
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000017133	eIF-3c_N	PF05470.12	4.9e-162	1	3
ENSCPBP00000017133	eIF-3c_N	PF05470.12	4.9e-162	2	3
ENSCPBP00000017133	eIF-3c_N	PF05470.12	4.9e-162	3	3
ENSCPBP00000017153	eIF-3c_N	PF05470.12	1e-156	1	3
ENSCPBP00000017153	eIF-3c_N	PF05470.12	1e-156	2	3
ENSCPBP00000017153	eIF-3c_N	PF05470.12	1e-156	3	3
ENSCPBP00000017149	eIF-3c_N	PF05470.12	1.2e-156	1	3
ENSCPBP00000017149	eIF-3c_N	PF05470.12	1.2e-156	2	3
ENSCPBP00000017149	eIF-3c_N	PF05470.12	1.2e-156	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000020299	-	2010	-	ENSCPBP00000017153	669 (aa)	-	-
ENSCPBT00000020277	-	2142	-	ENSCPBP00000017133	713 (aa)	-	-
ENSCPBT00000020295	-	2094	-	ENSCPBP00000017149	697 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000012407's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000012407's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000012407	-	92	83.537	ENSG00000205609	EIF3CL	71	92.038	Homo_sapiens
ENSCPBG00000012407	-	92	83.537	ENSG00000184110	EIF3C	100	97.468	Homo_sapiens
ENSCPBG00000012407	-	88	80.556	ENSAPOG00000024092	eif3c	75	80.556	Acanthochromis_polyacanthus
ENSCPBG00000012407	-	92	83.537	ENSAMEG00000015454	-	71	92.038	Ailuropoda_melanoleuca
ENSCPBG00000012407	-	95	72.998	ENSACIG00000015082	eif3c	70	87.580	Amphilophus_citrinellus
ENSCPBG00000012407	-	94	74.713	ENSAOCG00000021466	eif3c	69	87.898	Amphiprion_ocellaris
ENSCPBG00000012407	-	94	74.713	ENSAPEG00000010521	eif3c	69	87.898	Amphiprion_percula
ENSCPBG00000012407	-	94	73.507	ENSATEG00000019001	eif3c	66	85.802	Anabas_testudineus
ENSCPBG00000012407	-	92	89.506	ENSACAG00000005937	-	80	79.962	Anolis_carolinensis
ENSCPBG00000012407	-	92	83.537	ENSANAG00000020640	-	71	92.038	Aotus_nancymaae
ENSCPBG00000012407	-	89	76.522	ENSACLG00000009347	eif3c	73	80.556	Astatotilapia_calliptera
ENSCPBG00000012407	-	89	75.000	ENSACLG00000009322	eif3c	75	79.630	Astatotilapia_calliptera
ENSCPBG00000012407	-	93	74.225	ENSAMXG00000020949	eif3c	63	88.599	Astyanax_mexicanus
ENSCPBG00000012407	-	95	78.327	ENSBTAG00000006543	EIF3CL	72	92.038	Bos_taurus
ENSCPBG00000012407	-	88	44.294	WBGene00001226	eif-3.C	71	44.101	Caenorhabditis_elegans
ENSCPBG00000012407	-	92	84.146	ENSCJAG00000006341	-	82	81.553	Callithrix_jacchus
ENSCPBG00000012407	-	92	83.537	ENSCAFG00000017143	-	71	92.038	Canis_familiaris
ENSCPBG00000012407	-	92	83.537	ENSCAFG00020017587	-	71	92.038	Canis_lupus_dingo
ENSCPBG00000012407	-	94	80.124	ENSCHIG00000024795	-	72	92.038	Capra_hircus
ENSCPBG00000012407	-	92	84.146	ENSTSYG00000003486	-	71	91.720	Carlito_syrichta
ENSCPBG00000012407	-	94	79.605	ENSCAPG00000015887	-	76	79.739	Cavia_aperea
ENSCPBG00000012407	-	92	82.927	ENSCPOG00000007533	-	71	91.720	Cavia_porcellus
ENSCPBG00000012407	-	90	83.660	ENSCCAG00000034928	-	72	92.038	Cebus_capucinus
ENSCPBG00000012407	-	92	79.268	ENSCCAG00000027724	-	66	85.032	Cebus_capucinus
ENSCPBG00000012407	-	88	77.228	ENSCCAG00000029099	-	81	63.745	Cebus_capucinus
ENSCPBG00000012407	-	92	83.537	ENSCATG00000032673	-	71	92.038	Cercocebus_atys
ENSCPBG00000012407	-	92	84.756	ENSCLAG00000011094	-	71	92.038	Chinchilla_lanigera
ENSCPBG00000012407	-	92	83.537	ENSCSAG00000006297	-	71	92.038	Chlorocebus_sabaeus
ENSCPBG00000012407	-	56	65.272	ENSCHOG00000003120	-	65	65.272	Choloepus_hoffmanni
ENSCPBG00000012407	-	81	53.236	ENSCSAVG00000006744	-	78	53.112	Ciona_savignyi
ENSCPBG00000012407	-	92	83.537	ENSCANG00000033626	-	71	92.038	Colobus_angolensis_palliatus
ENSCPBG00000012407	-	92	82.209	ENSCGRG00001015265	EIF3C	71	92.038	Cricetulus_griseus_chok1gshd
ENSCPBG00000012407	-	95	72.253	ENSCSEG00000017770	eif3c	73	86.624	Cynoglossus_semilaevis
ENSCPBG00000012407	-	90	78.261	ENSCVAG00000005402	eif3c	77	80.909	Cyprinodon_variegatus
ENSCPBG00000012407	-	88	77.099	ENSDARG00000016443	eif3c	68	85.759	Danio_rerio
ENSCPBG00000012407	-	92	84.146	ENSDNOG00000031497	-	71	92.038	Dasypus_novemcinctus
ENSCPBG00000012407	-	88	91.667	ENSDORG00000016471	Eif3c	71	92.038	Dipodomys_ordii
ENSCPBG00000012407	-	85	53.474	FBgn0034258	eIF3c	70	51.786	Drosophila_melanogaster
ENSCPBG00000012407	-	83	92.694	ENSETEG00000013527	-	66	92.694	Echinops_telfairi
ENSCPBG00000012407	-	85	80.795	ENSEBUG00000001629	eif3c	66	78.758	Eptatretus_burgeri
ENSCPBG00000012407	-	94	84.342	ENSECAG00000008746	-	71	92.038	Equus_caballus
ENSCPBG00000012407	-	69	53.320	ENSEEUG00000000726	-	56	53.010	Erinaceus_europaeus
ENSCPBG00000012407	-	80	81.707	ENSEEUG00000006148	-	75	81.212	Erinaceus_europaeus
ENSCPBG00000012407	-	87	82.407	ENSELUG00000022257	eif3c	76	82.407	Esox_lucius
ENSCPBG00000012407	-	92	83.537	ENSFCAG00000015782	-	71	92.038	Felis_catus
ENSCPBG00000012407	-	88	92.523	ENSFDAG00000003588	-	71	92.523	Fukomys_damarensis
ENSCPBG00000012407	-	97	72.812	ENSFHEG00000014154	EIF3C	71	87.261	Fundulus_heteroclitus
ENSCPBG00000012407	-	85	77.064	ENSGMOG00000016885	eif3c	67	92.500	Gadus_morhua
ENSCPBG00000012407	-	88	75.258	ENSGACG00000007652	eif3c	66	87.898	Gasterosteus_aculeatus
ENSCPBG00000012407	-	89	95.205	ENSGAGG00000006666	-	79	95.238	Gopherus_agassizii
ENSCPBG00000012407	-	92	83.537	ENSGGOG00000026919	EIF3C	66	92.038	Gorilla_gorilla
ENSCPBG00000012407	-	92	83.537	ENSHGLG00000011445	EIF3C	71	92.038	Heterocephalus_glaber_female
ENSCPBG00000012407	-	92	83.537	ENSHGLG00100000217	EIF3C	71	92.038	Heterocephalus_glaber_male
ENSCPBG00000012407	-	94	72.523	ENSHCOG00000019694	eif3c	66	85.231	Hippocampus_comes
ENSCPBG00000012407	-	87	79.817	ENSIPUG00000016878	eif3c	68	86.667	Ictalurus_punctatus
ENSCPBG00000012407	-	92	83.537	ENSSTOG00000021278	-	71	92.038	Ictidomys_tridecemlineatus
ENSCPBG00000012407	-	92	83.537	ENSJJAG00000012722	Eif3c	71	92.038	Jaculus_jaculus
ENSCPBG00000012407	-	91	74.455	ENSKMAG00000021662	eif3c	66	82.371	Kryptolebias_marmoratus
ENSCPBG00000012407	-	91	74.405	ENSLBEG00000023370	eif3c	66	84.259	Labrus_bergylta
ENSCPBG00000012407	-	91	76.687	ENSLACG00000000770	eif3c	82	71.800	Latimeria_chalumnae
ENSCPBG00000012407	-	92	83.537	ENSLAFG00000027426	-	66	92.038	Loxodonta_africana
ENSCPBG00000012407	-	92	83.537	ENSMFAG00000041930	-	71	92.038	Macaca_fascicularis
ENSCPBG00000012407	-	92	83.537	ENSMMUG00000011798	-	71	92.038	Macaca_mulatta
ENSCPBG00000012407	-	92	83.537	ENSMNEG00000023915	-	71	92.038	Macaca_nemestrina
ENSCPBG00000012407	-	92	83.537	ENSMLEG00000027529	-	71	92.038	Mandrillus_leucophaeus
ENSCPBG00000012407	-	94	74.521	ENSMAMG00000012512	eif3c	84	87.580	Mastacembelus_armatus
ENSCPBG00000012407	-	89	75.000	ENSMZEG00005013685	eif3c	75	79.630	Maylandia_zebra
ENSCPBG00000012407	-	89	76.522	ENSMZEG00005013699	eif3c	73	80.556	Maylandia_zebra
ENSCPBG00000012407	-	92	81.595	ENSMAUG00000010621	Eif3c	80	75.048	Mesocricetus_auratus
ENSCPBG00000012407	-	92	83.537	ENSMICG00000036748	-	71	92.038	Microcebus_murinus
ENSCPBG00000012407	-	92	82.716	ENSMOCG00000004204	Eif3c	80	75.048	Microtus_ochrogaster
ENSCPBG00000012407	-	91	73.954	ENSMMOG00000001572	eif3c	80	73.954	Mola_mola
ENSCPBG00000012407	-	94	80.230	ENSMODG00000015579	-	71	92.038	Monodelphis_domestica
ENSCPBG00000012407	-	88	79.439	ENSMALG00000008907	eif3c	75	79.439	Monopterus_albus
ENSCPBG00000012407	-	92	80.982	MGP_CAROLIEiJ_G0030451	Eif3c	71	92.038	Mus_caroli
ENSCPBG00000012407	-	92	81.595	ENSMUSG00000030738	Eif3c	71	92.038	Mus_musculus
ENSCPBG00000012407	-	94	77.735	MGP_PahariEiJ_G0013661	Eif3c	80	74.667	Mus_pahari
ENSCPBG00000012407	-	92	80.982	MGP_SPRETEiJ_G0031565	Eif3c	71	92.038	Mus_spretus
ENSCPBG00000012407	-	92	83.537	ENSMPUG00000012732	-	69	91.720	Mustela_putorius_furo
ENSCPBG00000012407	-	92	83.537	ENSMLUG00000015558	-	71	92.038	Myotis_lucifugus
ENSCPBG00000012407	-	76	69.811	ENSNGAG00000010901	-	69	72.222	Nannospalax_galili
ENSCPBG00000012407	-	92	83.537	ENSNGAG00000007177	-	71	92.038	Nannospalax_galili
ENSCPBG00000012407	-	87	89.683	ENSNLEG00000001425	-	72	91.743	Nomascus_leucogenys
ENSCPBG00000012407	-	89	63.200	ENSMEUG00000005317	-	82	69.565	Notamacropus_eugenii
ENSCPBG00000012407	-	94	65.577	ENSMEUG00000009939	-	71	74.051	Notamacropus_eugenii
ENSCPBG00000012407	-	94	79.271	ENSOPRG00000000931	-	80	76.190	Ochotona_princeps
ENSCPBG00000012407	-	94	79.271	ENSODEG00000013508	-	71	92.038	Octodon_degus
ENSCPBG00000012407	-	72	49.240	ENSONIG00000011434	eif3c	72	77.692	Oreochromis_niloticus
ENSCPBG00000012407	-	94	74.393	ENSOANG00000011410	-	72	85.821	Ornithorhynchus_anatinus
ENSCPBG00000012407	-	92	83.537	ENSOCUG00000022489	-	71	92.038	Oryctolagus_cuniculus
ENSCPBG00000012407	-	87	77.982	ENSORLG00000006318	eif3c	62	93.929	Oryzias_latipes
ENSCPBG00000012407	-	89	77.982	ENSORLG00020015713	eif3c	84	83.483	Oryzias_latipes_hni
ENSCPBG00000012407	-	90	74.359	ENSORLG00015013772	eif3c	68	83.483	Oryzias_latipes_hsok
ENSCPBG00000012407	-	94	73.271	ENSOMEG00000020450	eif3c	66	86.728	Oryzias_melastigma
ENSCPBG00000012407	-	92	82.317	ENSOGAG00000012737	-	71	92.038	Otolemur_garnettii
ENSCPBG00000012407	-	94	79.079	ENSOARG00000002892	-	71	92.038	Ovis_aries
ENSCPBG00000012407	-	92	83.537	ENSPPRG00000012336	-	71	92.038	Panthera_pardus
ENSCPBG00000012407	-	92	83.537	ENSPTIG00000011712	-	71	92.038	Panthera_tigris_altaica
ENSCPBG00000012407	-	92	83.537	ENSPANG00000021151	-	71	92.038	Papio_anubis
ENSCPBG00000012407	-	94	73.734	ENSPKIG00000002049	eif3c	67	85.714	Paramormyrops_kingsleyae
ENSCPBG00000012407	-	94	75.048	ENSPMGG00000005409	eif3c	69	87.261	Periophthalmus_magnuspinnatus
ENSCPBG00000012407	-	90	85.135	ENSPEMG00000010899	Eif3c	70	92.038	Peromyscus_maniculatus_bairdii
ENSCPBG00000012407	-	94	80.230	ENSPCIG00000025206	-	72	92.038	Phascolarctos_cinereus
ENSCPBG00000012407	-	95	70.962	ENSPFOG00000004476	eif3c	68	85.494	Poecilia_formosa
ENSCPBG00000012407	-	92	72.812	ENSPLAG00000017480	eif3c	72	85.494	Poecilia_latipinna
ENSCPBG00000012407	-	89	78.505	ENSPMEG00000019512	eif3c	67	87.580	Poecilia_mexicana
ENSCPBG00000012407	-	91	70.902	ENSPREG00000023139	eif3c	78	87.580	Poecilia_reticulata
ENSCPBG00000012407	-	92	83.537	ENSPPYG00000007227	-	71	92.038	Pongo_abelii
ENSCPBG00000012407	-	72	78.695	ENSPCAG00000012710	-	74	91.401	Procavia_capensis
ENSCPBG00000012407	-	92	84.146	ENSPCOG00000019289	-	75	92.038	Propithecus_coquereli
ENSCPBG00000012407	-	92	82.317	ENSPVAG00000005804	-	71	92.038	Pteropus_vampyrus
ENSCPBG00000012407	-	94	73.308	ENSPNAG00000024040	eif3c	64	93.310	Pygocentrus_nattereri
ENSCPBG00000012407	-	94	78.311	ENSRNOG00000018761	Eif3c	71	92.038	Rattus_norvegicus
ENSCPBG00000012407	-	88	83.537	ENSRBIG00000044009	-	70	91.864	Rhinopithecus_bieti
ENSCPBG00000012407	-	92	83.537	ENSRROG00000043626	-	72	92.038	Rhinopithecus_roxellana
ENSCPBG00000012407	-	92	82.317	ENSSBOG00000032155	-	71	92.038	Saimiri_boliviensis_boliviensis
ENSCPBG00000012407	-	94	79.924	ENSSHAG00000011808	-	69	91.456	Sarcophilus_harrisii
ENSCPBG00000012407	-	87	78.899	ENSSFOG00015021823	eif3c	66	86.709	Scleropages_formosus
ENSCPBG00000012407	-	95	70.370	ENSSMAG00000016638	eif3c	64	92.254	Scophthalmus_maximus
ENSCPBG00000012407	-	94	73.184	ENSSDUG00000023117	eif3c	67	87.898	Seriola_dumerili
ENSCPBG00000012407	-	89	80.556	ENSSLDG00000009706	eif3c	77	80.556	Seriola_lalandi_dorsalis
ENSCPBG00000012407	-	92	88.820	ENSSPUG00000016470	-	72	91.743	Sphenodon_punctatus
ENSCPBG00000012407	-	95	72.998	ENSSPAG00000000426	eif3c	67	87.898	Stegastes_partitus
ENSCPBG00000012407	-	94	79.079	ENSSSCG00000034927	-	80	75.810	Sus_scrofa
ENSCPBG00000012407	-	93	72.968	ENSTRUG00000008951	eif3c	74	72.968	Takifugu_rubripes
ENSCPBG00000012407	-	94	75.048	ENSTNIG00000015210	eif3c	75	74.808	Tetraodon_nigroviridis
ENSCPBG00000012407	-	92	82.317	ENSTTRG00000005880	-	71	91.720	Tursiops_truncatus
ENSCPBG00000012407	-	72	79.079	ENSUAMG00000001127	-	74	95.312	Ursus_americanus
ENSCPBG00000012407	-	92	82.927	ENSUMAG00000010927	-	71	92.038	Ursus_maritimus
ENSCPBG00000012407	-	92	83.537	ENSVVUG00000025970	-	80	77.132	Vulpes_vulpes
ENSCPBG00000012407	-	94	73.954	ENSXETG00000002941	eif3c	80	73.333	Xenopus_tropicalis
ENSCPBG00000012407	-	95	72.812	ENSXMAG00000013796	eif3c	68	87.580	Xiphophorus_maculatus