EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000012513 (Gene tree)
Gene ID: 101937566
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 27288 bases
Position: chrKK082993.1:2174379-2201666
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000017033	UPF1_Zn_bind	PF09416.10	9.1e-75	1	1
ENSCPBP00000017033	ResIII	PF04851.15	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000020140	UPF1-201	3635	-	ENSCPBP00000017033	1113 (aa)	XP_023963936	UPI000CE63465

Gene Model

Click here to download ENSCPBG00000012513's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000012513's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000012513	UPF1	100	96.797	ENSG00000005007	UPF1	100	96.797	Homo_sapiens
ENSCPBG00000012513	UPF1	100	91.682	ENSAPOG00000023773	upf1	100	91.860	Acanthochromis_polyacanthus
ENSCPBG00000012513	UPF1	100	92.646	ENSAPOG00000010916	-	100	92.735	Acanthochromis_polyacanthus
ENSCPBG00000012513	UPF1	100	96.280	ENSAMEG00000011474	UPF1	100	96.280	Ailuropoda_melanoleuca
ENSCPBG00000012513	UPF1	100	91.914	ENSACIG00000019949	upf1	100	91.950	Amphilophus_citrinellus
ENSCPBG00000012513	UPF1	92	94.455	ENSACIG00000010985	-	100	94.553	Amphilophus_citrinellus
ENSCPBG00000012513	UPF1	100	92.646	ENSAOCG00000006352	-	100	92.735	Amphiprion_ocellaris
ENSCPBG00000012513	UPF1	100	91.195	ENSAOCG00000018519	upf1	100	91.851	Amphiprion_ocellaris
ENSCPBG00000012513	UPF1	100	91.195	ENSAPEG00000016344	upf1	100	91.851	Amphiprion_percula
ENSCPBG00000012513	UPF1	100	92.646	ENSAPEG00000006292	-	100	92.735	Amphiprion_percula
ENSCPBG00000012513	UPF1	100	92.825	ENSATEG00000016606	-	100	92.915	Anabas_testudineus
ENSCPBG00000012513	UPF1	100	90.539	ENSATEG00000017867	upf1	100	91.512	Anabas_testudineus
ENSCPBG00000012513	UPF1	94	98.297	ENSAPLG00000009175	UPF1	100	98.297	Anas_platyrhynchos
ENSCPBG00000012513	UPF1	94	96.110	ENSANAG00000024107	UPF1	95	96.110	Aotus_nancymaae
ENSCPBG00000012513	UPF1	100	92.377	ENSACLG00000022630	-	100	92.377	Astatotilapia_calliptera
ENSCPBG00000012513	UPF1	100	91.644	ENSACLG00000007181	upf1	100	91.682	Astatotilapia_calliptera
ENSCPBG00000012513	UPF1	100	93.280	ENSAMXG00000042187	upf1	100	93.817	Astyanax_mexicanus
ENSCPBG00000012513	UPF1	100	96.460	ENSBTAG00000020922	UPF1	100	96.460	Bos_taurus
ENSCPBG00000012513	UPF1	89	50.996	WBGene00004880	smg-2	95	48.858	Caenorhabditis_elegans
ENSCPBG00000012513	UPF1	100	95.859	ENSCJAG00000019627	UPF1	100	95.859	Callithrix_jacchus
ENSCPBG00000012513	UPF1	100	96.035	ENSCAFG00000014578	UPF1	100	96.035	Canis_familiaris
ENSCPBG00000012513	UPF1	100	96.975	ENSCAFG00020012347	UPF1	100	96.975	Canis_lupus_dingo
ENSCPBG00000012513	UPF1	100	97.408	ENSCHIG00000011018	UPF1	100	97.408	Capra_hircus
ENSCPBG00000012513	UPF1	96	96.097	ENSTSYG00000008877	UPF1	99	96.097	Carlito_syrichta
ENSCPBG00000012513	UPF1	94	97.059	ENSCAPG00000005758	UPF1	95	97.059	Cavia_aperea
ENSCPBG00000012513	UPF1	100	95.556	ENSCPOG00000025463	UPF1	100	95.556	Cavia_porcellus
ENSCPBG00000012513	UPF1	100	96.797	ENSCCAG00000032175	UPF1	100	96.797	Cebus_capucinus
ENSCPBG00000012513	UPF1	94	97.343	ENSCATG00000040306	UPF1	98	97.343	Cercocebus_atys
ENSCPBG00000012513	UPF1	96	95.845	ENSCLAG00000004037	UPF1	99	97.249	Chinchilla_lanigera
ENSCPBG00000012513	UPF1	100	96.883	ENSCSAG00000005276	UPF1	100	96.883	Chlorocebus_sabaeus
ENSCPBG00000012513	UPF1	77	78.571	ENSCING00000021399	-	99	78.687	Ciona_intestinalis
ENSCPBG00000012513	UPF1	99	72.114	ENSCSAVG00000006533	-	99	72.380	Ciona_savignyi
ENSCPBG00000012513	UPF1	95	96.549	ENSCANG00000029819	UPF1	99	96.549	Colobus_angolensis_palliatus
ENSCPBG00000012513	UPF1	100	96.598	ENSCGRG00001021067	Upf1	100	96.598	Cricetulus_griseus_chok1gshd
ENSCPBG00000012513	UPF1	95	96.078	ENSCGRG00000013480	Upf1	99	96.078	Cricetulus_griseus_crigri
ENSCPBG00000012513	UPF1	100	92.729	ENSCSEG00000016159	-	100	92.729	Cynoglossus_semilaevis
ENSCPBG00000012513	UPF1	100	86.726	ENSCSEG00000017239	upf1	100	86.637	Cynoglossus_semilaevis
ENSCPBG00000012513	UPF1	100	92.377	ENSCVAG00000010561	upf1	100	92.377	Cyprinodon_variegatus
ENSCPBG00000012513	UPF1	100	93.190	ENSDARG00000016302	upf1	100	93.728	Danio_rerio
ENSCPBG00000012513	UPF1	96	93.049	ENSDORG00000009984	Upf1	95	94.408	Dipodomys_ordii
ENSCPBG00000012513	UPF1	85	71.102	FBgn0030354	Upf1	84	67.965	Drosophila_melanogaster
ENSCPBG00000012513	UPF1	55	86.275	ENSEBUG00000010069	upf1	96	85.948	Eptatretus_burgeri
ENSCPBG00000012513	UPF1	100	97.140	ENSEASG00005006549	UPF1	100	97.140	Equus_asinus_asinus
ENSCPBG00000012513	UPF1	100	97.140	ENSECAG00000010639	UPF1	100	97.140	Equus_caballus
ENSCPBG00000012513	UPF1	100	90.633	ENSELUG00000020917	upf1	100	91.169	Esox_lucius
ENSCPBG00000012513	UPF1	100	92.493	ENSELUG00000012916	-	100	92.500	Esox_lucius
ENSCPBG00000012513	UPF1	100	96.123	ENSFCAG00000009757	UPF1	100	96.123	Felis_catus
ENSCPBG00000012513	UPF1	96	97.484	ENSFALG00000009312	UPF1	98	97.484	Ficedula_albicollis
ENSCPBG00000012513	UPF1	96	95.383	ENSFDAG00000014816	UPF1	99	97.154	Fukomys_damarensis
ENSCPBG00000012513	UPF1	86	94.059	ENSFHEG00000016276	-	96	94.059	Fundulus_heteroclitus
ENSCPBG00000012513	UPF1	100	89.127	ENSFHEG00000006428	upf1	100	89.127	Fundulus_heteroclitus
ENSCPBG00000012513	UPF1	100	91.474	ENSGMOG00000007541	upf1	100	91.741	Gadus_morhua
ENSCPBG00000012513	UPF1	100	98.393	ENSGALG00000003220	UPF1	100	98.393	Gallus_gallus
ENSCPBG00000012513	UPF1	62	94.978	ENSGAFG00000015443	-	85	94.978	Gambusia_affinis
ENSCPBG00000012513	UPF1	100	92.370	ENSGAFG00000004831	upf1	100	92.370	Gambusia_affinis
ENSCPBG00000012513	UPF1	100	99.012	ENSGAGG00000022217	UPF1	100	99.012	Gopherus_agassizii
ENSCPBG00000012513	UPF1	94	98.466	ENSGGOG00000002608	UPF1	99	98.466	Gorilla_gorilla
ENSCPBG00000012513	UPF1	90	90.361	ENSHBUG00000014694	upf1	100	90.361	Haplochromis_burtoni
ENSCPBG00000012513	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCPBG00000012513	UPF1	100	95.414	ENSHGLG00000010900	UPF1	100	95.414	Heterocephalus_glaber_female
ENSCPBG00000012513	UPF1	95	94.554	ENSHGLG00100005904	UPF1	97	94.554	Heterocephalus_glaber_male
ENSCPBG00000012513	UPF1	100	91.741	ENSHCOG00000008918	upf1	100	93.539	Hippocampus_comes
ENSCPBG00000012513	UPF1	100	93.459	ENSIPUG00000005108	UPF1	100	93.907	Ictalurus_punctatus
ENSCPBG00000012513	UPF1	100	96.619	ENSSTOG00000009196	UPF1	100	96.619	Ictidomys_tridecemlineatus
ENSCPBG00000012513	UPF1	100	95.648	ENSJJAG00000023151	Upf1	100	95.648	Jaculus_jaculus
ENSCPBG00000012513	UPF1	100	92.646	ENSKMAG00000004962	upf1	100	92.646	Kryptolebias_marmoratus
ENSCPBG00000012513	UPF1	100	89.991	ENSLBEG00000014862	upf1	100	91.320	Labrus_bergylta
ENSCPBG00000012513	UPF1	100	92.742	ENSLBEG00000027848	-	100	92.652	Labrus_bergylta
ENSCPBG00000012513	UPF1	63	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSCPBG00000012513	UPF1	100	95.422	ENSLOCG00000002072	upf1	100	95.512	Lepisosteus_oculatus
ENSCPBG00000012513	UPF1	100	95.579	ENSLAFG00000014963	UPF1	100	95.579	Loxodonta_africana
ENSCPBG00000012513	UPF1	100	96.536	ENSMFAG00000037748	UPF1	100	96.536	Macaca_fascicularis
ENSCPBG00000012513	UPF1	100	96.188	ENSMMUG00000023286	UPF1	100	96.188	Macaca_mulatta
ENSCPBG00000012513	UPF1	100	96.536	ENSMNEG00000000046	UPF1	100	96.536	Macaca_nemestrina
ENSCPBG00000012513	UPF1	94	97.438	ENSMLEG00000028404	UPF1	99	97.438	Mandrillus_leucophaeus
ENSCPBG00000012513	UPF1	100	90.186	ENSMAMG00000006229	upf1	100	91.335	Mastacembelus_armatus
ENSCPBG00000012513	UPF1	100	91.846	ENSMAMG00000006231	-	100	92.384	Mastacembelus_armatus
ENSCPBG00000012513	UPF1	100	92.377	ENSMZEG00005016386	-	100	92.377	Maylandia_zebra
ENSCPBG00000012513	UPF1	100	90.194	ENSMZEG00005003489	upf1	100	91.474	Maylandia_zebra
ENSCPBG00000012513	UPF1	94	97.820	ENSMGAG00000004745	UPF1	100	97.820	Meleagris_gallopavo
ENSCPBG00000012513	UPF1	96	94.505	ENSMAUG00000011398	Upf1	98	94.505	Mesocricetus_auratus
ENSCPBG00000012513	UPF1	100	96.699	ENSMICG00000001659	UPF1	100	96.699	Microcebus_murinus
ENSCPBG00000012513	UPF1	100	95.318	ENSMOCG00000005699	Upf1	100	95.318	Microtus_ochrogaster
ENSCPBG00000012513	UPF1	100	90.925	ENSMMOG00000007881	upf1	100	91.472	Mola_mola
ENSCPBG00000012513	UPF1	94	92.080	ENSMMOG00000007537	-	99	92.176	Mola_mola
ENSCPBG00000012513	UPF1	100	96.391	ENSMODG00000003689	UPF1	100	96.391	Monodelphis_domestica
ENSCPBG00000012513	UPF1	100	91.285	ENSMALG00000000144	upf1	100	91.644	Monopterus_albus
ENSCPBG00000012513	UPF1	100	91.339	ENSMALG00000018100	-	100	91.332	Monopterus_albus
ENSCPBG00000012513	UPF1	100	96.509	MGP_CAROLIEiJ_G0031142	Upf1	100	96.509	Mus_caroli
ENSCPBG00000012513	UPF1	100	96.509	ENSMUSG00000058301	Upf1	100	96.509	Mus_musculus
ENSCPBG00000012513	UPF1	100	96.509	MGP_PahariEiJ_G0021607	Upf1	100	96.509	Mus_pahari
ENSCPBG00000012513	UPF1	100	96.509	MGP_SPRETEiJ_G0032260	Upf1	100	96.509	Mus_spretus
ENSCPBG00000012513	UPF1	100	96.975	ENSMPUG00000015516	UPF1	100	96.975	Mustela_putorius_furo
ENSCPBG00000012513	UPF1	99	96.869	ENSMLUG00000012122	UPF1	99	96.869	Myotis_lucifugus
ENSCPBG00000012513	UPF1	100	95.406	ENSNGAG00000024107	Upf1	100	95.406	Nannospalax_galili
ENSCPBG00000012513	UPF1	100	89.014	ENSNBRG00000022069	-	100	93.495	Neolamprologus_brichardi
ENSCPBG00000012513	UPF1	100	89.937	ENSNBRG00000000670	upf1	100	89.982	Neolamprologus_brichardi
ENSCPBG00000012513	UPF1	94	91.651	ENSNLEG00000006062	UPF1	99	91.651	Nomascus_leucogenys
ENSCPBG00000012513	UPF1	83	95.294	ENSMEUG00000014146	-	83	95.294	Notamacropus_eugenii
ENSCPBG00000012513	UPF1	94	90.796	ENSOPRG00000014018	UPF1	99	90.796	Ochotona_princeps
ENSCPBG00000012513	UPF1	100	95.996	ENSODEG00000012426	UPF1	100	95.996	Octodon_degus
ENSCPBG00000012513	UPF1	100	92.466	ENSONIG00000012729	-	100	92.466	Oreochromis_niloticus
ENSCPBG00000012513	UPF1	100	90.459	ENSONIG00000010452	upf1	100	91.741	Oreochromis_niloticus
ENSCPBG00000012513	UPF1	100	96.110	ENSOANG00000004568	UPF1	100	96.110	Ornithorhynchus_anatinus
ENSCPBG00000012513	UPF1	100	92.652	ENSORLG00000008453	upf1	100	92.466	Oryzias_latipes
ENSCPBG00000012513	UPF1	100	92.735	ENSORLG00020014758	upf1	100	92.466	Oryzias_latipes_hni
ENSCPBG00000012513	UPF1	100	92.735	ENSORLG00015010165	upf1	100	92.466	Oryzias_latipes_hsok
ENSCPBG00000012513	UPF1	100	92.556	ENSOMEG00000003665	upf1	100	92.556	Oryzias_melastigma
ENSCPBG00000012513	UPF1	100	96.886	ENSOGAG00000012866	UPF1	100	96.886	Otolemur_garnettii
ENSCPBG00000012513	UPF1	96	94.766	ENSOARG00000010739	UPF1	100	94.490	Ovis_aries
ENSCPBG00000012513	UPF1	95	96.549	ENSPPAG00000043884	UPF1	97	96.549	Pan_paniscus
ENSCPBG00000012513	UPF1	100	96.123	ENSPPRG00000023470	UPF1	100	96.123	Panthera_pardus
ENSCPBG00000012513	UPF1	94	96.555	ENSPTIG00000010159	UPF1	99	96.555	Panthera_tigris_altaica
ENSCPBG00000012513	UPF1	100	96.536	ENSPTRG00000010721	UPF1	100	96.536	Pan_troglodytes
ENSCPBG00000012513	UPF1	100	96.536	ENSPANG00000008847	UPF1	100	96.536	Papio_anubis
ENSCPBG00000012513	UPF1	90	95.365	ENSPKIG00000006069	upf1	96	95.365	Paramormyrops_kingsleyae
ENSCPBG00000012513	UPF1	69	98.307	ENSPSIG00000009491	UPF1	100	98.307	Pelodiscus_sinensis
ENSCPBG00000012513	UPF1	100	89.535	ENSPMGG00000017327	upf1	100	89.643	Periophthalmus_magnuspinnatus
ENSCPBG00000012513	UPF1	100	95.656	ENSPEMG00000001085	Upf1	100	95.656	Peromyscus_maniculatus_bairdii
ENSCPBG00000012513	UPF1	100	87.388	ENSPMAG00000001206	upf1	100	87.209	Petromyzon_marinus
ENSCPBG00000012513	UPF1	100	97.770	ENSPCIG00000006156	UPF1	100	97.770	Phascolarctos_cinereus
ENSCPBG00000012513	UPF1	100	92.280	ENSPLAG00000016232	-	100	92.377	Poecilia_latipinna
ENSCPBG00000012513	UPF1	100	90.036	ENSPLAG00000018155	-	100	89.858	Poecilia_latipinna
ENSCPBG00000012513	UPF1	100	92.197	ENSPMEG00000016319	-	100	92.294	Poecilia_mexicana
ENSCPBG00000012513	UPF1	100	90.591	ENSPMEG00000011443	-	100	90.412	Poecilia_mexicana
ENSCPBG00000012513	UPF1	100	92.101	ENSPREG00000011247	-	100	92.197	Poecilia_reticulata
ENSCPBG00000012513	UPF1	100	90.302	ENSPREG00000009940	upf1	100	90.302	Poecilia_reticulata
ENSCPBG00000012513	UPF1	100	90.925	ENSPPYG00000009752	UPF1	100	90.925	Pongo_abelii
ENSCPBG00000012513	UPF1	75	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCPBG00000012513	UPF1	100	96.539	ENSPCOG00000023813	UPF1	100	96.539	Propithecus_coquereli
ENSCPBG00000012513	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCPBG00000012513	UPF1	100	92.466	ENSPNYG00000016731	-	100	92.466	Pundamilia_nyererei
ENSCPBG00000012513	UPF1	100	90.194	ENSPNYG00000003694	upf1	100	91.474	Pundamilia_nyererei
ENSCPBG00000012513	UPF1	100	93.280	ENSPNAG00000025614	upf1	100	93.817	Pygocentrus_nattereri
ENSCPBG00000012513	UPF1	100	96.509	ENSRNOG00000020134	Upf1	100	96.509	Rattus_norvegicus
ENSCPBG00000012513	UPF1	95	94.216	ENSRBIG00000013894	UPF1	98	98.362	Rhinopithecus_bieti
ENSCPBG00000012513	UPF1	95	96.549	ENSRROG00000040935	UPF1	98	98.362	Rhinopithecus_roxellana
ENSCPBG00000012513	UPF1	75	55.699	YMR080C	NAM7	87	55.699	Saccharomyces_cerevisiae
ENSCPBG00000012513	UPF1	95	95.911	ENSSBOG00000023632	UPF1	98	95.911	Saimiri_boliviensis_boliviensis
ENSCPBG00000012513	UPF1	94	97.917	ENSSHAG00000010499	UPF1	100	97.917	Sarcophilus_harrisii
ENSCPBG00000012513	UPF1	100	95.605	ENSSFOG00015021095	upf1	99	97.228	Scleropages_formosus
ENSCPBG00000012513	UPF1	100	89.371	ENSSMAG00000005055	upf1	100	90.442	Scophthalmus_maximus
ENSCPBG00000012513	UPF1	100	92.473	ENSSMAG00000021018	-	100	92.563	Scophthalmus_maximus
ENSCPBG00000012513	UPF1	100	92.832	ENSSDUG00000009629	-	100	92.921	Seriola_dumerili
ENSCPBG00000012513	UPF1	100	90.451	ENSSDUG00000013320	upf1	100	91.600	Seriola_dumerili
ENSCPBG00000012513	UPF1	100	92.832	ENSSLDG00000006878	-	100	92.921	Seriola_lalandi_dorsalis
ENSCPBG00000012513	UPF1	100	91.258	ENSSLDG00000020868	upf1	100	91.808	Seriola_lalandi_dorsalis
ENSCPBG00000012513	UPF1	100	98.473	ENSSPUG00000010538	UPF1	100	98.473	Sphenodon_punctatus
ENSCPBG00000012513	UPF1	100	89.677	ENSSPAG00000000003	upf1	100	89.705	Stegastes_partitus
ENSCPBG00000012513	UPF1	100	92.639	ENSSPAG00000011521	-	100	92.639	Stegastes_partitus
ENSCPBG00000012513	UPF1	100	97.319	ENSSSCG00000039301	UPF1	99	98.469	Sus_scrofa
ENSCPBG00000012513	UPF1	83	90.562	ENSTGUG00000001057	UPF1	100	95.582	Taeniopygia_guttata
ENSCPBG00000012513	UPF1	100	91.928	ENSTRUG00000005131	-	100	91.839	Takifugu_rubripes
ENSCPBG00000012513	UPF1	100	91.382	ENSTRUG00000000150	upf1	100	91.382	Takifugu_rubripes
ENSCPBG00000012513	UPF1	100	92.870	ENSTTRG00000011544	UPF1	100	92.761	Tursiops_truncatus
ENSCPBG00000012513	UPF1	100	96.975	ENSUAMG00000007093	UPF1	100	96.975	Ursus_americanus
ENSCPBG00000012513	UPF1	94	98.565	ENSUMAG00000006652	UPF1	99	98.759	Ursus_maritimus
ENSCPBG00000012513	UPF1	100	96.975	ENSVVUG00000007797	UPF1	100	96.975	Vulpes_vulpes
ENSCPBG00000012513	UPF1	100	82.337	ENSXETG00000013602	upf1	100	82.250	Xenopus_tropicalis
ENSCPBG00000012513	UPF1	93	94.391	ENSXCOG00000005764	-	100	94.391	Xiphophorus_couchianus
ENSCPBG00000012513	UPF1	97	90.251	ENSXCOG00000015275	-	96	89.972	Xiphophorus_couchianus
ENSCPBG00000012513	UPF1	100	92.197	ENSXMAG00000002540	-	100	92.197	Xiphophorus_maculatus
ENSCPBG00000012513	UPF1	100	90.485	ENSXMAG00000001703	-	100	90.215	Xiphophorus_maculatus