EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000013599 (Gene tree)
Gene ID: 101932720
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 62929 bases
Position: chrKK082919.1:3521212-3584140
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000018709	ResIII	PF04851.15	1.3e-07	1	1
ENSCPBP00000018694	ResIII	PF04851.15	1.6e-07	1	1
ENSCPBP00000018692	ResIII	PF04851.15	1.7e-07	1	1
ENSCPBP00000018713	ResIII	PF04851.15	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000022078	SMARCAL1-207	3817	-	ENSCPBP00000018713	984 (aa)	-	UPI000388BAF1
ENSCPBT00000022058	SMARCAL1-202	3158	XM_005279737	ENSCPBP00000018694	967 (aa)	XP_005279794	UPI000388FE83
ENSCPBT00000022072	SMARCAL1-205	2984	-	ENSCPBP00000018707	909 (aa)	-	-
ENSCPBT00000022056	SMARCAL1-201	3209	XM_005279736	ENSCPBP00000018692	984 (aa)	XP_005279793	UPI000388BAF1
ENSCPBT00000022074	SMARCAL1-206	2948	-	ENSCPBP00000018709	897 (aa)	-	UPI00038915AC
ENSCPBT00000022067	SMARCAL1-204	3050	-	ENSCPBP00000018702	931 (aa)	-	-
ENSCPBT00000022063	SMARCAL1-203	3143	XM_008167757	ENSCPBP00000018698	962 (aa)	XP_008165979	UPI00046BF973

Gene Model

Click here to download ENSCPBG00000013599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000013599's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000013599	SMARCAL1	99	67.350	ENSG00000138375	SMARCAL1	99	70.625	Homo_sapiens
ENSCPBG00000013599	SMARCAL1	85	63.016	ENSAPOG00000020156	SMARCAL1	91	63.016	Acanthochromis_polyacanthus
ENSCPBG00000013599	SMARCAL1	75	62.195	ENSACIG00000001500	smarcal1	93	63.907	Amphilophus_citrinellus
ENSCPBG00000013599	SMARCAL1	82	62.911	ENSAOCG00000014266	SMARCAL1	94	62.911	Amphiprion_ocellaris
ENSCPBG00000013599	SMARCAL1	73	64.958	ENSAPEG00000015861	SMARCAL1	79	64.958	Amphiprion_percula
ENSCPBG00000013599	SMARCAL1	74	63.611	ENSATEG00000020624	SMARCAL1	79	63.611	Anabas_testudineus
ENSCPBG00000013599	SMARCAL1	99	75.621	ENSAPLG00000009864	SMARCAL1	99	73.802	Anas_platyrhynchos
ENSCPBG00000013599	SMARCAL1	100	73.940	ENSACAG00000004612	SMARCAL1	97	73.940	Anolis_carolinensis
ENSCPBG00000013599	SMARCAL1	70	66.667	ENSACLG00000015990	SMARCAL1	94	65.615	Astatotilapia_calliptera
ENSCPBG00000013599	SMARCAL1	90	73.684	ENSAMXG00000003350	smarcal1	90	64.557	Astyanax_mexicanus
ENSCPBG00000013599	SMARCAL1	67	48.125	ENSCING00000009308	-	99	49.135	Ciona_intestinalis
ENSCPBG00000013599	SMARCAL1	97	52.025	ENSCSEG00000010785	SMARCAL1	99	52.025	Cynoglossus_semilaevis
ENSCPBG00000013599	SMARCAL1	73	62.932	ENSCVAG00000018780	SMARCAL1	81	62.932	Cyprinodon_variegatus
ENSCPBG00000013599	SMARCAL1	54	54.857	ENSEBUG00000011906	SMARCAL1	73	54.857	Eptatretus_burgeri
ENSCPBG00000013599	SMARCAL1	74	63.793	ENSELUG00000010440	-	78	60.207	Esox_lucius
ENSCPBG00000013599	SMARCAL1	99	75.772	ENSFALG00000003981	SMARCAL1	97	75.772	Ficedula_albicollis
ENSCPBG00000013599	SMARCAL1	73	62.813	ENSFHEG00000008380	SMARCAL1	96	61.295	Fundulus_heteroclitus
ENSCPBG00000013599	SMARCAL1	50	65.152	ENSGMOG00000010034	smarcal1	90	69.231	Gadus_morhua
ENSCPBG00000013599	SMARCAL1	99	76.266	ENSGALG00000011475	RPL37A	96	76.266	Gallus_gallus
ENSCPBG00000013599	SMARCAL1	70	68.037	ENSGACG00000006073	SMARCAL1	100	68.715	Gasterosteus_aculeatus
ENSCPBG00000013599	SMARCAL1	93	95.082	ENSGAGG00000015660	SMARCAL1	99	95.082	Gopherus_agassizii
ENSCPBG00000013599	SMARCAL1	70	66.667	ENSHBUG00000002973	smarcal1	77	66.667	Haplochromis_burtoni
ENSCPBG00000013599	SMARCAL1	70	64.774	ENSHCOG00000017921	smarcal1	82	64.774	Hippocampus_comes
ENSCPBG00000013599	SMARCAL1	70	63.439	ENSKMAG00000012023	SMARCAL1	79	63.439	Kryptolebias_marmoratus
ENSCPBG00000013599	SMARCAL1	90	63.993	ENSLBEG00000003493	smarcal1	98	63.993	Labrus_bergylta
ENSCPBG00000013599	SMARCAL1	67	62.462	ENSLBEG00000022915	smarcal1	87	62.462	Labrus_bergylta
ENSCPBG00000013599	SMARCAL1	99	55.214	ENSLACG00000010974	SMARCAL1	99	56.151	Latimeria_chalumnae
ENSCPBG00000013599	SMARCAL1	70	70.229	ENSLOCG00000009637	smarcal1	78	70.229	Lepisosteus_oculatus
ENSCPBG00000013599	SMARCAL1	96	53.927	ENSMAMG00000000828	SMARCAL1	98	53.927	Mastacembelus_armatus
ENSCPBG00000013599	SMARCAL1	70	66.522	ENSMZEG00005007660	SMARCAL1	94	65.615	Maylandia_zebra
ENSCPBG00000013599	SMARCAL1	99	68.913	ENSMGAG00000011658	SMARCAL1	99	68.913	Meleagris_gallopavo
ENSCPBG00000013599	SMARCAL1	67	62.256	ENSMMOG00000003842	smarcal1	82	62.256	Mola_mola
ENSCPBG00000013599	SMARCAL1	100	68.553	ENSMODG00000015544	SMARCAL1	96	68.553	Monodelphis_domestica
ENSCPBG00000013599	SMARCAL1	66	67.634	ENSNBRG00000016273	smarcal1	85	67.634	Neolamprologus_brichardi
ENSCPBG00000013599	SMARCAL1	70	73.155	ENSMEUG00000004395	SMARCAL1	97	73.262	Notamacropus_eugenii
ENSCPBG00000013599	SMARCAL1	71	66.810	ENSONIG00000009036	smarcal1	99	66.862	Oreochromis_niloticus
ENSCPBG00000013599	SMARCAL1	99	48.729	ENSORLG00000016455	SMARCAL1	97	54.977	Oryzias_latipes
ENSCPBG00000013599	SMARCAL1	99	55.079	ENSORLG00020001610	SMARCAL1	100	55.079	Oryzias_latipes_hni
ENSCPBG00000013599	SMARCAL1	85	61.466	ENSORLG00015001865	SMARCAL1	94	61.466	Oryzias_latipes_hsok
ENSCPBG00000013599	SMARCAL1	99	61.898	ENSOMEG00000001845	smarcal1	100	61.898	Oryzias_melastigma
ENSCPBG00000013599	SMARCAL1	77	59.974	ENSPMGG00000019092	SMARCAL1	86	59.974	Periophthalmus_magnuspinnatus
ENSCPBG00000013599	SMARCAL1	100	68.692	ENSPCIG00000022514	SMARCAL1	98	72.183	Phascolarctos_cinereus
ENSCPBG00000013599	SMARCAL1	73	62.897	ENSPFOG00000000560	SMARCAL1	96	61.769	Poecilia_formosa
ENSCPBG00000013599	SMARCAL1	73	62.759	ENSPMEG00000018146	SMARCAL1	96	61.769	Poecilia_mexicana
ENSCPBG00000013599	SMARCAL1	56	63.273	ENSPREG00000009591	SMARCAL1	78	69.444	Poecilia_reticulata
ENSCPBG00000013599	SMARCAL1	71	72.414	ENSPNAG00000014900	smarcal1	72	72.414	Pygocentrus_nattereri
ENSCPBG00000013599	SMARCAL1	99	62.236	ENSSHAG00000013538	SMARCAL1	99	62.236	Sarcophilus_harrisii
ENSCPBG00000013599	SMARCAL1	74	62.177	ENSSMAG00000010427	SMARCAL1	79	62.177	Scophthalmus_maximus
ENSCPBG00000013599	SMARCAL1	97	49.515	ENSSDUG00000017470	SMARCAL1	95	52.341	Seriola_dumerili
ENSCPBG00000013599	SMARCAL1	99	52.419	ENSSLDG00000007224	SMARCAL1	100	52.314	Seriola_lalandi_dorsalis
ENSCPBG00000013599	SMARCAL1	99	75.152	ENSSPUG00000015369	SMARCAL1	99	75.152	Sphenodon_punctatus
ENSCPBG00000013599	SMARCAL1	66	67.176	ENSSPAG00000003742	smarcal1	84	67.176	Stegastes_partitus
ENSCPBG00000013599	SMARCAL1	94	64.356	ENSSSCG00000035501	SMARCAL1	98	63.200	Sus_scrofa
ENSCPBG00000013599	SMARCAL1	70	77.093	ENSTGUG00000005079	SMARCAL1	100	77.093	Taeniopygia_guttata
ENSCPBG00000013599	SMARCAL1	68	62.145	ENSTRUG00000010701	SMARCAL1	79	62.145	Takifugu_rubripes
ENSCPBG00000013599	SMARCAL1	99	56.698	ENSTTRG00000009001	SMARCAL1	97	56.698	Tursiops_truncatus
ENSCPBG00000013599	SMARCAL1	99	70.884	ENSXETG00000000465	smarcal1	99	70.884	Xenopus_tropicalis