EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000014147 (Gene tree)
Gene ID: 101947025
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 34037 bases
Position: chrKK083081.1:1155132-1189168
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000019608	CSD	PF00313.22	5.4e-26	1	1
ENSCPBP00000019607	CSD	PF00313.22	6.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000023089	YBX3-201	1100	-	ENSCPBP00000019607	354 (aa)	XP_005295806	UPI000388A853
ENSCPBT00000023090	YBX3-202	893	-	ENSCPBP00000019608	285 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000014147's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000014147's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000014147	YBX3	83	47.604	ENSCPBG00000009853	-	85	56.849

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000014147	YBX3	81	78.840	ENSG00000060138	YBX3	92	97.647	Homo_sapiens
ENSCPBG00000014147	YBX3	81	81.315	ENSAMEG00000009393	YBX3	83	81.034	Ailuropoda_melanoleuca
ENSCPBG00000014147	YBX3	79	70.370	ENSAPLG00000003147	YBX3	99	53.737	Anas_platyrhynchos
ENSCPBG00000014147	YBX3	53	85.000	ENSANAG00000033366	-	69	84.746	Aotus_nancymaae
ENSCPBG00000014147	YBX3	81	79.181	ENSANAG00000024492	-	92	79.725	Aotus_nancymaae
ENSCPBG00000014147	YBX3	88	77.143	ENSBTAG00000009663	YBX3	90	72.189	Bos_taurus
ENSCPBG00000014147	YBX3	93	62.264	ENSCJAG00000033824	-	65	87.879	Callithrix_jacchus
ENSCPBG00000014147	YBX3	81	78.498	ENSCJAG00000021660	-	78	79.381	Callithrix_jacchus
ENSCPBG00000014147	YBX3	80	80.488	ENSCAFG00000013401	YBX3	98	86.321	Canis_familiaris
ENSCPBG00000014147	YBX3	81	77.663	ENSCAFG00020006412	YBX3	77	77.855	Canis_lupus_dingo
ENSCPBG00000014147	YBX3	88	78.095	ENSCHIG00000010863	YBX3	95	75.740	Capra_hircus
ENSCPBG00000014147	YBX3	99	64.236	ENSTSYG00000035821	-	71	95.652	Carlito_syrichta
ENSCPBG00000014147	YBX3	80	78.819	ENSTSYG00000004204	-	88	79.514	Carlito_syrichta
ENSCPBG00000014147	YBX3	80	77.700	ENSCAPG00000015039	YBX3	93	77.700	Cavia_aperea
ENSCPBG00000014147	YBX3	70	95.699	ENSCPOG00000011329	YBX3	81	84.545	Cavia_porcellus
ENSCPBG00000014147	YBX3	81	78.498	ENSCCAG00000016469	YBX3	78	79.381	Cebus_capucinus
ENSCPBG00000014147	YBX3	81	78.157	ENSCATG00000034411	YBX3	78	79.038	Cercocebus_atys
ENSCPBG00000014147	YBX3	80	77.700	ENSCLAG00000016030	YBX3	94	77.700	Chinchilla_lanigera
ENSCPBG00000014147	YBX3	81	78.498	ENSCSAG00000008744	YBX3	78	79.381	Chlorocebus_sabaeus
ENSCPBG00000014147	YBX3	81	79.181	ENSCANG00000036801	YBX3	90	83.258	Colobus_angolensis_palliatus
ENSCPBG00000014147	YBX3	78	86.957	ENSCGRG00001016148	Ybx3	80	79.725	Cricetulus_griseus_chok1gshd
ENSCPBG00000014147	YBX3	72	94.949	ENSCGRG00000004563	Ybx3	98	78.425	Cricetulus_griseus_crigri
ENSCPBG00000014147	YBX3	100	69.359	ENSDORG00000009103	Ybx3	81	80.836	Dipodomys_ordii
ENSCPBG00000014147	YBX3	79	72.474	ENSETEG00000002557	YBX3	99	70.526	Echinops_telfairi
ENSCPBG00000014147	YBX3	81	74.570	ENSEASG00005014726	YBX3	69	89.583	Equus_asinus_asinus
ENSCPBG00000014147	YBX3	81	77.663	ENSECAG00000013777	YBX3	78	77.855	Equus_caballus
ENSCPBG00000014147	YBX3	79	77.895	ENSEEUG00000010415	YBX3	100	78.246	Erinaceus_europaeus
ENSCPBG00000014147	YBX3	81	79.452	ENSFCAG00000027748	YBX3	78	80.345	Felis_catus
ENSCPBG00000014147	YBX3	74	97.030	ENSFALG00000003661	YBX3	77	97.030	Ficedula_albicollis
ENSCPBG00000014147	YBX3	68	100.000	ENSFDAG00000021192	YBX3	92	74.216	Fukomys_damarensis
ENSCPBG00000014147	YBX3	89	81.538	ENSGALG00000031890	YBX3	89	80.695	Gallus_gallus
ENSCPBG00000014147	YBX3	100	95.775	ENSGAGG00000017780	YBX3	100	95.775	Gopherus_agassizii
ENSCPBG00000014147	YBX3	81	78.840	ENSGGOG00000001352	YBX3	78	79.725	Gorilla_gorilla
ENSCPBG00000014147	YBX3	95	62.139	ENSHGLG00000014798	-	59	94.565	Heterocephalus_glaber_female
ENSCPBG00000014147	YBX3	67	69.421	ENSHGLG00000015495	-	74	75.743	Heterocephalus_glaber_female
ENSCPBG00000014147	YBX3	74	84.977	ENSHGLG00100003589	YBX3	85	84.977	Heterocephalus_glaber_male
ENSCPBG00000014147	YBX3	80	74.825	ENSSTOG00000002108	-	88	75.175	Ictidomys_tridecemlineatus
ENSCPBG00000014147	YBX3	81	77.320	ENSSTOG00000032577	-	82	76.125	Ictidomys_tridecemlineatus
ENSCPBG00000014147	YBX3	67	76.471	ENSJJAG00000014239	Ybx3	93	85.542	Jaculus_jaculus
ENSCPBG00000014147	YBX3	81	80.479	ENSLAFG00000017247	YBX3	86	75.517	Loxodonta_africana
ENSCPBG00000014147	YBX3	74	87.500	ENSMFAG00000039369	YBX3	78	79.381	Macaca_fascicularis
ENSCPBG00000014147	YBX3	81	78.498	ENSMMUG00000022469	YBX3	89	79.038	Macaca_mulatta
ENSCPBG00000014147	YBX3	74	87.500	ENSMNEG00000045109	YBX3	78	79.381	Macaca_nemestrina
ENSCPBG00000014147	YBX3	94	70.501	ENSMLEG00000033618	YBX3	81	79.443	Mandrillus_leucophaeus
ENSCPBG00000014147	YBX3	74	98.020	ENSMGAG00000014224	YBX3	98	89.100	Meleagris_gallopavo
ENSCPBG00000014147	YBX3	90	77.090	ENSMAUG00000012185	Ybx3	88	83.710	Mesocricetus_auratus
ENSCPBG00000014147	YBX3	81	81.507	ENSMICG00000038002	-	78	81.724	Microcebus_murinus
ENSCPBG00000014147	YBX3	100	63.699	ENSMICG00000031459	-	77	72.146	Microcebus_murinus
ENSCPBG00000014147	YBX3	74	89.524	ENSMOCG00000016291	Ybx3	93	84.091	Microtus_ochrogaster
ENSCPBG00000014147	YBX3	80	79.649	ENSMODG00000018248	YBX3	91	79.649	Monodelphis_domestica
ENSCPBG00000014147	YBX3	78	86.957	MGP_CAROLIEiJ_G0028947	Ybx3	80	79.725	Mus_caroli
ENSCPBG00000014147	YBX3	78	86.957	ENSMUSG00000030189	Ybx3	80	79.381	Mus_musculus
ENSCPBG00000014147	YBX3	78	86.957	MGP_PahariEiJ_G0022709	Ybx3	80	79.725	Mus_pahari
ENSCPBG00000014147	YBX3	78	86.957	MGP_SPRETEiJ_G0029994	Ybx3	80	79.381	Mus_spretus
ENSCPBG00000014147	YBX3	81	62.667	ENSMPUG00000011810	YBX3	78	63.300	Mustela_putorius_furo
ENSCPBG00000014147	YBX3	73	79.182	ENSMLUG00000007476	YBX3	100	76.952	Myotis_lucifugus
ENSCPBG00000014147	YBX3	75	87.273	ENSNGAG00000000710	Ybx3	89	78.995	Nannospalax_galili
ENSCPBG00000014147	YBX3	81	76.109	ENSNLEG00000034844	YBX3	83	75.342	Nomascus_leucogenys
ENSCPBG00000014147	YBX3	56	65.217	ENSMEUG00000002507	-	81	73.529	Notamacropus_eugenii
ENSCPBG00000014147	YBX3	76	74.359	ENSODEG00000017957	YBX3	85	73.196	Octodon_degus
ENSCPBG00000014147	YBX3	81	75.342	ENSOCUG00000001889	YBX3	84	75.258	Oryctolagus_cuniculus
ENSCPBG00000014147	YBX3	77	91.150	ENSOGAG00000013245	YBX3	79	78.114	Otolemur_garnettii
ENSCPBG00000014147	YBX3	72	91.837	ENSOARG00000020919	YBX3	98	74.570	Ovis_aries
ENSCPBG00000014147	YBX3	81	78.840	ENSPPAG00000039068	YBX3	81	79.381	Pan_paniscus
ENSCPBG00000014147	YBX3	81	79.452	ENSPPRG00000005859	YBX3	78	80.345	Panthera_pardus
ENSCPBG00000014147	YBX3	79	80.986	ENSPTIG00000005322	YBX3	81	80.769	Panthera_tigris_altaica
ENSCPBG00000014147	YBX3	81	78.840	ENSPTRG00000004681	YBX3	78	79.725	Pan_troglodytes
ENSCPBG00000014147	YBX3	81	78.157	ENSPANG00000010280	YBX3	78	79.038	Papio_anubis
ENSCPBG00000014147	YBX3	74	94.313	ENSPSIG00000009247	YBX3	99	94.313	Pelodiscus_sinensis
ENSCPBG00000014147	YBX3	83	81.328	ENSPEMG00000010391	-	83	84.091	Peromyscus_maniculatus_bairdii
ENSCPBG00000014147	YBX3	88	78.165	ENSPEMG00000012132	-	88	84.091	Peromyscus_maniculatus_bairdii
ENSCPBG00000014147	YBX3	72	76.953	ENSPCIG00000029949	YBX3	100	76.953	Phascolarctos_cinereus
ENSCPBG00000014147	YBX3	81	79.181	ENSPPYG00000004279	YBX3	78	80.069	Pongo_abelii
ENSCPBG00000014147	YBX3	59	82.160	ENSPCAG00000001397	YBX3	71	82.524	Procavia_capensis
ENSCPBG00000014147	YBX3	50	78.453	ENSPCOG00000011663	YBX3	69	78.771	Propithecus_coquereli
ENSCPBG00000014147	YBX3	83	67.000	ENSPVAG00000006740	YBX3	55	82.927	Pteropus_vampyrus
ENSCPBG00000014147	YBX3	87	78.025	ENSRNOG00000005480	Ybx3	80	80.069	Rattus_norvegicus
ENSCPBG00000014147	YBX3	81	78.840	ENSRBIG00000039208	YBX3	78	79.725	Rhinopithecus_bieti
ENSCPBG00000014147	YBX3	81	78.840	ENSRROG00000029638	YBX3	78	79.725	Rhinopithecus_roxellana
ENSCPBG00000014147	YBX3	97	70.690	ENSSBOG00000030573	YBX3	85	78.276	Saimiri_boliviensis_boliviensis
ENSCPBG00000014147	YBX3	69	95.402	ENSSHAG00000003262	YBX3	98	76.712	Sarcophilus_harrisii
ENSCPBG00000014147	YBX3	81	79.655	ENSSSCG00000000633	YBX3	76	80.345	Sus_scrofa
ENSCPBG00000014147	YBX3	74	98.020	ENSTGUG00000012047	YBX3	74	98.020	Taeniopygia_guttata
ENSCPBG00000014147	YBX3	100	68.407	ENSTBEG00000012570	YBX3	80	80.137	Tupaia_belangeri
ENSCPBG00000014147	YBX3	73	72.659	ENSTTRG00000008045	YBX3	100	72.659	Tursiops_truncatus
ENSCPBG00000014147	YBX3	77	77.256	ENSUAMG00000016662	YBX3	100	77.256	Ursus_americanus
ENSCPBG00000014147	YBX3	79	80.986	ENSUMAG00000016118	YBX3	94	80.769	Ursus_maritimus
ENSCPBG00000014147	YBX3	63	100.000	ENSVPAG00000000876	YBX3	100	61.620	Vicugna_pacos
ENSCPBG00000014147	YBX3	77	76.173	ENSVVUG00000004956	YBX3	100	76.534	Vulpes_vulpes
ENSCPBG00000014147	YBX3	81	71.429	ENSXETG00000016239	ybx3	89	70.588	Xenopus_tropicalis