EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000014670 (Gene tree)
Gene ID: 101951720
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 98162 bases
Position: chr8:25832224-25930385
Accession: 29434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000020410	zf-CCCH	PF00642.24	0.00025	1	1
ENSCPBP00000020403	zf-CCCH	PF00642.24	0.00026	1	1
ENSCPBP00000020400	zf-CCCH	PF00642.24	0.00026	1	1
ENSCPBP00000020394	zf-CCCH	PF00642.24	0.00028	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000024001	RC3H1-201	4139	-	ENSCPBP00000020394	1133 (aa)	XP_005304289	UPI000388A7A8
ENSCPBT00000024010	RC3H1-203	3974	-	ENSCPBP00000020403	1078 (aa)	-	-
ENSCPBT00000024017	RC3H1-204	3857	-	ENSCPBP00000020410	1039 (aa)	-	-
ENSCPBT00000024007	RC3H1-202	3986	-	ENSCPBP00000020400	1082 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000014670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000014670's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000014670	RC3H1	87	83.820	ENSCPBG00000009811	RC3H2	76	83.820

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000014670	RC3H1	100	89.737	ENSG00000135870	RC3H1	100	89.737	Homo_sapiens
ENSCPBG00000014670	RC3H1	100	96.304	ENSAMEG00000015657	RC3H1	100	89.483	Ailuropoda_melanoleuca
ENSCPBG00000014670	RC3H1	100	95.896	ENSAPLG00000005341	RC3H1	100	90.061	Anas_platyrhynchos
ENSCPBG00000014670	RC3H1	100	87.489	ENSACAG00000015271	RC3H1	100	87.489	Anolis_carolinensis
ENSCPBG00000014670	RC3H1	100	96.304	ENSANAG00000036716	RC3H1	100	89.474	Aotus_nancymaae
ENSCPBG00000014670	RC3H1	100	88.246	ENSBTAG00000052708	RC3H1	93	96.522	Bos_taurus
ENSCPBG00000014670	RC3H1	100	96.304	ENSCJAG00000009106	RC3H1	93	96.304	Callithrix_jacchus
ENSCPBG00000014670	RC3H1	100	88.957	ENSCAFG00000014434	RC3H1	100	89.483	Canis_familiaris
ENSCPBG00000014670	RC3H1	100	88.879	ENSCAFG00020017112	RC3H1	99	97.528	Canis_lupus_dingo
ENSCPBG00000014670	RC3H1	100	88.586	ENSCHIG00000002873	RC3H1	100	89.025	Capra_hircus
ENSCPBG00000014670	RC3H1	99	96.304	ENSTSYG00000003913	RC3H1	93	96.304	Carlito_syrichta
ENSCPBG00000014670	RC3H1	100	85.514	ENSCPOG00000004349	RC3H1	100	85.601	Cavia_porcellus
ENSCPBG00000014670	RC3H1	100	96.304	ENSCCAG00000025652	RC3H1	93	96.304	Cebus_capucinus
ENSCPBG00000014670	RC3H1	100	89.912	ENSCATG00000033497	RC3H1	100	89.912	Cercocebus_atys
ENSCPBG00000014670	RC3H1	100	87.709	ENSCLAG00000011267	RC3H1	100	87.709	Chinchilla_lanigera
ENSCPBG00000014670	RC3H1	96	90.119	ENSCSAG00000011823	RC3H1	85	90.119	Chlorocebus_sabaeus
ENSCPBG00000014670	RC3H1	100	89.921	ENSCANG00000032120	RC3H1	100	89.921	Colobus_angolensis_palliatus
ENSCPBG00000014670	RC3H1	100	87.357	ENSCGRG00001020812	Rc3h1	100	87.884	Cricetulus_griseus_chok1gshd
ENSCPBG00000014670	RC3H1	100	87.357	ENSCGRG00000011952	Rc3h1	100	87.884	Cricetulus_griseus_crigri
ENSCPBG00000014670	RC3H1	58	84.370	ENSDNOG00000011494	RC3H1	99	85.486	Dasypus_novemcinctus
ENSCPBG00000014670	RC3H1	100	88.313	ENSDORG00000004855	Rc3h1	100	89.016	Dipodomys_ordii
ENSCPBG00000014670	RC3H1	86	89.762	ENSETEG00000012064	RC3H1	87	90.357	Echinops_telfairi
ENSCPBG00000014670	RC3H1	100	87.709	ENSEASG00005017000	RC3H1	100	88.147	Equus_asinus_asinus
ENSCPBG00000014670	RC3H1	100	88.447	ENSECAG00000021208	RC3H1	100	88.909	Equus_caballus
ENSCPBG00000014670	RC3H1	89	81.818	ENSEEUG00000014861	RC3H1	93	81.818	Erinaceus_europaeus
ENSCPBG00000014670	RC3H1	100	89.386	ENSFCAG00000014924	RC3H1	100	89.825	Felis_catus
ENSCPBG00000014670	RC3H1	100	96.522	ENSFALG00000002947	RC3H1	93	96.522	Ficedula_albicollis
ENSCPBG00000014670	RC3H1	100	88.235	ENSFDAG00000013303	RC3H1	100	88.323	Fukomys_damarensis
ENSCPBG00000014670	RC3H1	100	96.304	ENSGALG00000004587	RC3H1	100	90.111	Gallus_gallus
ENSCPBG00000014670	RC3H1	100	97.681	ENSGAGG00000018194	RC3H1	100	97.681	Gopherus_agassizii
ENSCPBG00000014670	RC3H1	100	85.305	ENSGGOG00000005735	RC3H1	93	96.304	Gorilla_gorilla
ENSCPBG00000014670	RC3H1	100	71.087	ENSHGLG00000004183	-	100	82.884	Heterocephalus_glaber_female
ENSCPBG00000014670	RC3H1	100	96.304	ENSHGLG00100008577	RC3H1	93	96.304	Heterocephalus_glaber_male
ENSCPBG00000014670	RC3H1	100	87.972	ENSSTOG00000016033	RC3H1	100	89.025	Ictidomys_tridecemlineatus
ENSCPBG00000014670	RC3H1	100	87.687	ENSJJAG00000018915	Rc3h1	100	88.215	Jaculus_jaculus
ENSCPBG00000014670	RC3H1	100	75.699	ENSLACG00000016186	RC3H1	100	79.495	Latimeria_chalumnae
ENSCPBG00000014670	RC3H1	97	89.493	ENSLAFG00000004367	RC3H1	100	90.127	Loxodonta_africana
ENSCPBG00000014670	RC3H1	100	90.079	ENSMFAG00000033725	RC3H1	100	89.825	Macaca_fascicularis
ENSCPBG00000014670	RC3H1	100	96.304	ENSMMUG00000000630	RC3H1	100	89.825	Macaca_mulatta
ENSCPBG00000014670	RC3H1	100	89.912	ENSMNEG00000035968	RC3H1	100	89.912	Macaca_nemestrina
ENSCPBG00000014670	RC3H1	100	90.000	ENSMLEG00000037455	RC3H1	100	90.000	Mandrillus_leucophaeus
ENSCPBG00000014670	RC3H1	100	85.213	ENSMAUG00000020864	Rc3h1	100	85.028	Mesocricetus_auratus
ENSCPBG00000014670	RC3H1	100	88.938	ENSMICG00000003000	RC3H1	100	89.464	Microcebus_murinus
ENSCPBG00000014670	RC3H1	93	85.687	ENSMOCG00000016587	Rc3h1	98	86.158	Microtus_ochrogaster
ENSCPBG00000014670	RC3H1	100	88.070	ENSMODG00000004289	RC3H1	100	88.421	Monodelphis_domestica
ENSCPBG00000014670	RC3H1	100	87.182	MGP_CAROLIEiJ_G0014756	Rc3h1	100	87.709	Mus_caroli
ENSCPBG00000014670	RC3H1	100	87.094	ENSMUSG00000040423	Rc3h1	100	87.357	Mus_musculus
ENSCPBG00000014670	RC3H1	100	87.445	MGP_PahariEiJ_G0027992	Rc3h1	100	87.621	Mus_pahari
ENSCPBG00000014670	RC3H1	100	87.094	MGP_SPRETEiJ_G0015563	Rc3h1	100	87.357	Mus_spretus
ENSCPBG00000014670	RC3H1	100	88.938	ENSMPUG00000004747	RC3H1	100	89.377	Mustela_putorius_furo
ENSCPBG00000014670	RC3H1	100	97.339	ENSMLUG00000011127	RC3H1	92	97.339	Myotis_lucifugus
ENSCPBG00000014670	RC3H1	100	88.235	ENSNGAG00000011135	Rc3h1	100	88.762	Nannospalax_galili
ENSCPBG00000014670	RC3H1	100	96.304	ENSNLEG00000015327	RC3H1	100	89.737	Nomascus_leucogenys
ENSCPBG00000014670	RC3H1	99	76.734	ENSOPRG00000013068	RC3H1	99	77.085	Ochotona_princeps
ENSCPBG00000014670	RC3H1	100	87.796	ENSODEG00000014185	RC3H1	100	87.972	Octodon_degus
ENSCPBG00000014670	RC3H1	100	89.391	ENSOANG00000000924	RC3H1	100	89.565	Ornithorhynchus_anatinus
ENSCPBG00000014670	RC3H1	98	96.304	ENSOCUG00000004930	RC3H1	91	96.304	Oryctolagus_cuniculus
ENSCPBG00000014670	RC3H1	100	81.946	ENSOGAG00000004044	RC3H1	100	82.472	Otolemur_garnettii
ENSCPBG00000014670	RC3H1	100	88.666	ENSOARG00000013011	RC3H1	100	89.102	Ovis_aries
ENSCPBG00000014670	RC3H1	100	96.304	ENSPPAG00000039253	RC3H1	100	89.746	Pan_paniscus
ENSCPBG00000014670	RC3H1	100	88.938	ENSPPRG00000009007	RC3H1	100	89.377	Panthera_pardus
ENSCPBG00000014670	RC3H1	100	88.899	ENSPTIG00000015326	RC3H1	100	89.336	Panthera_tigris_altaica
ENSCPBG00000014670	RC3H1	100	96.304	ENSPTRG00000001702	RC3H1	100	89.746	Pan_troglodytes
ENSCPBG00000014670	RC3H1	100	89.825	ENSPANG00000008886	RC3H1	100	89.825	Papio_anubis
ENSCPBG00000014670	RC3H1	100	96.739	ENSPSIG00000016181	RC3H1	100	93.591	Pelodiscus_sinensis
ENSCPBG00000014670	RC3H1	100	87.713	ENSPEMG00000011966	Rc3h1	100	87.445	Peromyscus_maniculatus_bairdii
ENSCPBG00000014670	RC3H1	76	88.645	ENSPCIG00000002058	RC3H1	95	97.982	Phascolarctos_cinereus
ENSCPBG00000014670	RC3H1	100	96.304	ENSPPYG00000000490	RC3H1	93	96.304	Pongo_abelii
ENSCPBG00000014670	RC3H1	81	94.737	ENSPCAG00000010775	RC3H1	87	94.737	Procavia_capensis
ENSCPBG00000014670	RC3H1	83	87.049	ENSPCOG00000021795	RC3H1	96	87.686	Propithecus_coquereli
ENSCPBG00000014670	RC3H1	100	80.404	ENSPVAG00000007593	RC3H1	100	81.459	Pteropus_vampyrus
ENSCPBG00000014670	RC3H1	97	90.687	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSCPBG00000014670	RC3H1	100	96.304	ENSRBIG00000037743	RC3H1	100	89.833	Rhinopithecus_bieti
ENSCPBG00000014670	RC3H1	100	89.737	ENSRROG00000036546	RC3H1	100	89.737	Rhinopithecus_roxellana
ENSCPBG00000014670	RC3H1	93	95.822	ENSSBOG00000010664	RC3H1	100	88.668	Saimiri_boliviensis_boliviensis
ENSCPBG00000014670	RC3H1	100	87.730	ENSSHAG00000007589	RC3H1	93	96.304	Sarcophilus_harrisii
ENSCPBG00000014670	RC3H1	95	86.261	ENSSARG00000004660	RC3H1	86	86.261	Sorex_araneus
ENSCPBG00000014670	RC3H1	100	87.522	ENSSPUG00000018472	RC3H1	100	87.522	Sphenodon_punctatus
ENSCPBG00000014670	RC3H1	100	96.304	ENSSSCG00000015498	RC3H1	100	90.481	Sus_scrofa
ENSCPBG00000014670	RC3H1	100	89.201	ENSTGUG00000004090	RC3H1	100	89.289	Taeniopygia_guttata
ENSCPBG00000014670	RC3H1	87	96.304	ENSTBEG00000005015	RC3H1	88	91.610	Tupaia_belangeri
ENSCPBG00000014670	RC3H1	100	96.087	ENSTTRG00000008572	RC3H1	93	96.087	Tursiops_truncatus
ENSCPBG00000014670	RC3H1	100	88.519	ENSUAMG00000019525	RC3H1	96	96.304	Ursus_americanus
ENSCPBG00000014670	RC3H1	100	96.304	ENSUMAG00000020087	RC3H1	100	89.492	Ursus_maritimus
ENSCPBG00000014670	RC3H1	99	97.748	ENSVPAG00000002591	RC3H1	92	97.748	Vicugna_pacos
ENSCPBG00000014670	RC3H1	100	88.821	ENSVVUG00000014201	RC3H1	93	96.304	Vulpes_vulpes
ENSCPBG00000014670	RC3H1	100	91.463	ENSXETG00000020030	rc3h1	96	91.463	Xenopus_tropicalis