EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000015724 (Gene tree)
Gene ID: 101934047
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 106057 bases
Position: chr8:32467970-32574026
Accession: 16792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000021937	EST1	PF10374.9	1.5e-25	1	1
ENSCPBP00000021930	EST1	PF10374.9	1.7e-25	1	1
ENSCPBP00000021937	EST1_DNA_bind	PF10373.9	1.7e-54	1	1
ENSCPBP00000021930	EST1_DNA_bind	PF10373.9	1.8e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000025829	SMG7-202	3816	-	ENSCPBP00000021937	1139 (aa)	-	-
ENSCPBT00000025822	SMG7-201	3966	-	ENSCPBP00000021930	1189 (aa)	XP_005290789	UPI000388A081

Gene Model

Click here to download ENSCPBG00000015724's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000015724's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000015724	SMG7	100	91.499	ENSG00000116698	SMG7	100	91.906	Homo_sapiens
ENSCPBG00000015724	SMG7	86	75.000	ENSAPOG00000009611	smg7	96	75.000	Acanthochromis_polyacanthus
ENSCPBG00000015724	SMG7	99	90.644	ENSAMEG00000002357	SMG7	100	90.775	Ailuropoda_melanoleuca
ENSCPBG00000015724	SMG7	97	65.093	ENSACIG00000015152	smg7	100	65.569	Amphilophus_citrinellus
ENSCPBG00000015724	SMG7	99	67.037	ENSAOCG00000013538	smg7	99	67.404	Amphiprion_ocellaris
ENSCPBG00000015724	SMG7	99	66.980	ENSAPEG00000007851	smg7	99	67.347	Amphiprion_percula
ENSCPBG00000015724	SMG7	99	66.610	ENSATEG00000006931	smg7	99	67.119	Anabas_testudineus
ENSCPBG00000015724	SMG7	99	93.662	ENSAPLG00000015811	SMG7	99	93.662	Anas_platyrhynchos
ENSCPBG00000015724	SMG7	100	90.476	ENSACAG00000014989	SMG7	100	91.061	Anolis_carolinensis
ENSCPBG00000015724	SMG7	100	92.024	ENSANAG00000028114	SMG7	100	92.191	Aotus_nancymaae
ENSCPBG00000015724	SMG7	99	65.772	ENSACLG00000022079	smg7	99	66.667	Astatotilapia_calliptera
ENSCPBG00000015724	SMG7	99	69.468	ENSAMXG00000020809	smg7	99	69.410	Astyanax_mexicanus
ENSCPBG00000015724	SMG7	100	90.184	ENSBTAG00000008003	SMG7	100	90.359	Bos_taurus
ENSCPBG00000015724	SMG7	100	91.674	ENSCJAG00000005135	SMG7	100	91.674	Callithrix_jacchus
ENSCPBG00000015724	SMG7	99	87.616	ENSCAFG00000013276	SMG7	97	87.700	Canis_familiaris
ENSCPBG00000015724	SMG7	99	90.970	ENSCAFG00020015475	SMG7	99	91.132	Canis_lupus_dingo
ENSCPBG00000015724	SMG7	99	87.658	ENSCHIG00000018192	SMG7	99	87.743	Capra_hircus
ENSCPBG00000015724	SMG7	100	91.148	ENSTSYG00000002667	SMG7	100	91.297	Carlito_syrichta
ENSCPBG00000015724	SMG7	99	87.869	ENSCPOG00000008906	SMG7	99	87.563	Cavia_porcellus
ENSCPBG00000015724	SMG7	100	91.762	ENSCCAG00000028596	SMG7	100	92.167	Cebus_capucinus
ENSCPBG00000015724	SMG7	100	91.762	ENSCATG00000011063	SMG7	100	92.167	Cercocebus_atys
ENSCPBG00000015724	SMG7	100	90.798	ENSCLAG00000010751	SMG7	100	90.798	Chinchilla_lanigera
ENSCPBG00000015724	SMG7	99	88.374	ENSCSAG00000012654	SMG7	97	88.543	Chlorocebus_sabaeus
ENSCPBG00000015724	SMG7	92	80.109	ENSCHOG00000010522	SMG7	93	80.566	Choloepus_hoffmanni
ENSCPBG00000015724	SMG7	99	91.784	ENSCANG00000015680	SMG7	100	92.080	Colobus_angolensis_palliatus
ENSCPBG00000015724	SMG7	100	89.921	ENSCGRG00001013705	Smg7	100	89.921	Cricetulus_griseus_chok1gshd
ENSCPBG00000015724	SMG7	99	90.009	ENSCGRG00000018401	Smg7	100	90.009	Cricetulus_griseus_crigri
ENSCPBG00000015724	SMG7	95	70.000	ENSCVAG00000011842	smg7	100	70.000	Cyprinodon_variegatus
ENSCPBG00000015724	SMG7	99	68.238	ENSDARG00000060767	smg7	99	68.760	Danio_rerio
ENSCPBG00000015724	SMG7	100	87.647	ENSDORG00000007331	Smg7	100	87.815	Dipodomys_ordii
ENSCPBG00000015724	SMG7	97	87.684	ENSETEG00000002654	SMG7	100	87.684	Echinops_telfairi
ENSCPBG00000015724	SMG7	100	88.655	ENSEASG00005006524	SMG7	100	88.824	Equus_asinus_asinus
ENSCPBG00000015724	SMG7	93	96.707	ENSECAG00000004313	SMG7	97	96.429	Equus_caballus
ENSCPBG00000015724	SMG7	97	87.088	ENSEEUG00000002024	SMG7	94	87.262	Erinaceus_europaeus
ENSCPBG00000015724	SMG7	99	67.596	ENSELUG00000010293	smg7	99	68.029	Esox_lucius
ENSCPBG00000015724	SMG7	100	88.151	ENSFCAG00000010900	SMG7	100	89.899	Felis_catus
ENSCPBG00000015724	SMG7	98	89.541	ENSFALG00000003047	SMG7	100	89.541	Ficedula_albicollis
ENSCPBG00000015724	SMG7	99	87.817	ENSFDAG00000012121	SMG7	99	87.874	Fukomys_damarensis
ENSCPBG00000015724	SMG7	99	65.266	ENSFHEG00000011073	smg7	99	65.841	Fundulus_heteroclitus
ENSCPBG00000015724	SMG7	82	75.094	ENSGMOG00000004916	smg7	88	75.094	Gadus_morhua
ENSCPBG00000015724	SMG7	100	93.438	ENSGALG00000004667	SMG7	100	93.351	Gallus_gallus
ENSCPBG00000015724	SMG7	99	64.948	ENSGAFG00000019000	smg7	99	65.030	Gambusia_affinis
ENSCPBG00000015724	SMG7	97	63.126	ENSGACG00000001634	smg7	98	65.870	Gasterosteus_aculeatus
ENSCPBG00000015724	SMG7	100	91.411	ENSGGOG00000002342	SMG7	100	91.819	Gorilla_gorilla
ENSCPBG00000015724	SMG7	99	66.475	ENSHBUG00000003726	smg7	96	72.589	Haplochromis_burtoni
ENSCPBG00000015724	SMG7	100	90.885	ENSHGLG00000009353	SMG7	100	91.060	Heterocephalus_glaber_female
ENSCPBG00000015724	SMG7	100	80.924	ENSHGLG00100004878	-	100	81.092	Heterocephalus_glaber_male
ENSCPBG00000015724	SMG7	100	90.798	ENSHGLG00100009637	-	100	90.973	Heterocephalus_glaber_male
ENSCPBG00000015724	SMG7	99	69.032	ENSIPUG00000016997	smg7	99	69.199	Ictalurus_punctatus
ENSCPBG00000015724	SMG7	100	88.992	ENSSTOG00000000401	SMG7	100	88.992	Ictidomys_tridecemlineatus
ENSCPBG00000015724	SMG7	100	87.059	ENSJJAG00000012351	Smg7	100	87.059	Jaculus_jaculus
ENSCPBG00000015724	SMG7	97	62.226	ENSKMAG00000004900	smg7	96	70.000	Kryptolebias_marmoratus
ENSCPBG00000015724	SMG7	99	66.466	ENSLBEG00000002983	smg7	99	66.810	Labrus_bergylta
ENSCPBG00000015724	SMG7	52	62.292	ENSLBEG00000005220	-	75	62.126	Labrus_bergylta
ENSCPBG00000015724	SMG7	100	75.948	ENSLACG00000000972	SMG7	100	75.928	Latimeria_chalumnae
ENSCPBG00000015724	SMG7	99	71.285	ENSLOCG00000002010	smg7	99	71.870	Lepisosteus_oculatus
ENSCPBG00000015724	SMG7	99	88.823	ENSLAFG00000008186	SMG7	99	88.992	Loxodonta_africana
ENSCPBG00000015724	SMG7	100	88.824	ENSMFAG00000031653	SMG7	100	92.167	Macaca_fascicularis
ENSCPBG00000015724	SMG7	99	91.378	ENSMMUG00000018458	SMG7	99	91.547	Macaca_mulatta
ENSCPBG00000015724	SMG7	100	91.762	ENSMNEG00000034798	SMG7	100	92.167	Macaca_nemestrina
ENSCPBG00000015724	SMG7	100	91.762	ENSMLEG00000037170	SMG7	100	92.167	Mandrillus_leucophaeus
ENSCPBG00000015724	SMG7	88	65.409	ENSMAMG00000018733	smg7	86	65.593	Mastacembelus_armatus
ENSCPBG00000015724	SMG7	99	66.240	ENSMZEG00005015247	smg7	99	66.496	Maylandia_zebra
ENSCPBG00000015724	SMG7	97	93.165	ENSMGAG00000001561	SMG7	98	93.165	Meleagris_gallopavo
ENSCPBG00000015724	SMG7	100	90.009	ENSMAUG00000019484	Smg7	100	90.184	Mesocricetus_auratus
ENSCPBG00000015724	SMG7	100	91.762	ENSMICG00000007145	SMG7	100	91.323	Microcebus_murinus
ENSCPBG00000015724	SMG7	100	89.658	ENSMOCG00000020748	Smg7	100	89.833	Microtus_ochrogaster
ENSCPBG00000015724	SMG7	99	65.000	ENSMMOG00000001524	smg7	99	65.289	Mola_mola
ENSCPBG00000015724	SMG7	92	92.073	ENSMODG00000007139	SMG7	99	92.073	Monodelphis_domestica
ENSCPBG00000015724	SMG7	97	69.652	ENSMALG00000000061	smg7	92	69.652	Monopterus_albus
ENSCPBG00000015724	SMG7	100	89.571	MGP_CAROLIEiJ_G0014704	Smg7	100	89.833	Mus_caroli
ENSCPBG00000015724	SMG7	100	89.483	ENSMUSG00000042772	Smg7	100	89.746	Mus_musculus
ENSCPBG00000015724	SMG7	100	89.395	MGP_PahariEiJ_G0027940	Smg7	100	89.658	Mus_pahari
ENSCPBG00000015724	SMG7	100	89.571	MGP_SPRETEiJ_G0015511	Smg7	100	89.833	Mus_spretus
ENSCPBG00000015724	SMG7	98	88.215	ENSMPUG00000011732	SMG7	97	88.557	Mustela_putorius_furo
ENSCPBG00000015724	SMG7	100	87.731	ENSMLUG00000015417	SMG7	99	88.409	Myotis_lucifugus
ENSCPBG00000015724	SMG7	100	90.272	ENSNGAG00000009836	Smg7	100	89.746	Nannospalax_galili
ENSCPBG00000015724	SMG7	98	60.997	ENSNBRG00000024343	smg7	97	70.142	Neolamprologus_brichardi
ENSCPBG00000015724	SMG7	100	91.762	ENSNLEG00000018018	SMG7	100	92.167	Nomascus_leucogenys
ENSCPBG00000015724	SMG7	71	91.870	ENSMEUG00000004681	SMG7	73	91.870	Notamacropus_eugenii
ENSCPBG00000015724	SMG7	96	77.535	ENSOPRG00000013942	SMG7	96	77.273	Ochotona_princeps
ENSCPBG00000015724	SMG7	100	90.798	ENSODEG00000010390	SMG7	100	90.798	Octodon_degus
ENSCPBG00000015724	SMG7	99	65.541	ENSONIG00000000277	smg7	99	66.525	Oreochromis_niloticus
ENSCPBG00000015724	SMG7	98	86.809	ENSOANG00000000994	SMG7	100	87.234	Ornithorhynchus_anatinus
ENSCPBG00000015724	SMG7	99	82.303	ENSOCUG00000005887	SMG7	92	82.472	Oryctolagus_cuniculus
ENSCPBG00000015724	SMG7	99	63.682	ENSORLG00000007314	smg7	99	65.091	Oryzias_latipes
ENSCPBG00000015724	SMG7	99	64.013	ENSORLG00020015779	smg7	99	65.423	Oryzias_latipes_hni
ENSCPBG00000015724	SMG7	99	64.463	ENSORLG00015012289	smg7	99	64.959	Oryzias_latipes_hsok
ENSCPBG00000015724	SMG7	99	64.215	ENSOMEG00000002328	smg7	99	64.876	Oryzias_melastigma
ENSCPBG00000015724	SMG7	97	86.979	ENSOGAG00000003107	SMG7	94	87.240	Otolemur_garnettii
ENSCPBG00000015724	SMG7	99	87.648	ENSOARG00000001352	SMG7	100	87.255	Ovis_aries
ENSCPBG00000015724	SMG7	100	91.674	ENSPPAG00000031619	SMG7	100	92.080	Pan_paniscus
ENSCPBG00000015724	SMG7	100	91.323	ENSPPRG00000011222	SMG7	100	91.236	Panthera_pardus
ENSCPBG00000015724	SMG7	96	91.471	ENSPTIG00000007242	SMG7	100	91.384	Panthera_tigris_altaica
ENSCPBG00000015724	SMG7	100	91.674	ENSPTRG00000001764	SMG7	100	92.080	Pan_troglodytes
ENSCPBG00000015724	SMG7	100	91.762	ENSPANG00000004520	SMG7	100	91.937	Papio_anubis
ENSCPBG00000015724	SMG7	99	66.750	ENSPKIG00000007242	smg7	99	69.307	Paramormyrops_kingsleyae
ENSCPBG00000015724	SMG7	98	96.702	ENSPSIG00000012201	SMG7	100	96.702	Pelodiscus_sinensis
ENSCPBG00000015724	SMG7	71	43.198	ENSPMGG00000021833	smg7	89	55.838	Periophthalmus_magnuspinnatus
ENSCPBG00000015724	SMG7	100	87.059	ENSPEMG00000011315	Smg7	100	87.227	Peromyscus_maniculatus_bairdii
ENSCPBG00000015724	SMG7	100	92.359	ENSPCIG00000003786	SMG7	100	92.929	Phascolarctos_cinereus
ENSCPBG00000015724	SMG7	99	65.045	ENSPFOG00000019219	smg7	99	65.486	Poecilia_formosa
ENSCPBG00000015724	SMG7	99	65.146	ENSPLAG00000001446	smg7	99	65.520	Poecilia_latipinna
ENSCPBG00000015724	SMG7	96	64.444	ENSPMEG00000005218	smg7	99	64.831	Poecilia_mexicana
ENSCPBG00000015724	SMG7	88	62.429	ENSPREG00000019039	smg7	92	63.089	Poecilia_reticulata
ENSCPBG00000015724	SMG7	100	91.762	ENSPPYG00000000427	SMG7	100	91.937	Pongo_abelii
ENSCPBG00000015724	SMG7	89	85.996	ENSPCAG00000008360	SMG7	88	85.345	Procavia_capensis
ENSCPBG00000015724	SMG7	100	88.333	ENSPCOG00000011996	SMG7	100	87.895	Propithecus_coquereli
ENSCPBG00000015724	SMG7	91	83.732	ENSPVAG00000000851	SMG7	89	83.732	Pteropus_vampyrus
ENSCPBG00000015724	SMG7	99	66.695	ENSPNYG00000007643	smg7	99	67.238	Pundamilia_nyererei
ENSCPBG00000015724	SMG7	99	69.569	ENSPNAG00000011374	smg7	99	72.727	Pygocentrus_nattereri
ENSCPBG00000015724	SMG7	100	89.405	ENSRNOG00000027962	Smg7	100	89.739	Rattus_norvegicus
ENSCPBG00000015724	SMG7	100	91.674	ENSRBIG00000036316	SMG7	100	92.080	Rhinopithecus_bieti
ENSCPBG00000015724	SMG7	100	91.674	ENSRROG00000035719	SMG7	100	92.080	Rhinopithecus_roxellana
ENSCPBG00000015724	SMG7	100	88.739	ENSSBOG00000023454	SMG7	100	92.080	Saimiri_boliviensis_boliviensis
ENSCPBG00000015724	SMG7	99	91.792	ENSSHAG00000013147	SMG7	99	91.718	Sarcophilus_harrisii
ENSCPBG00000015724	SMG7	94	75.622	ENSSFOG00015017252	smg7	99	77.487	Scleropages_formosus
ENSCPBG00000015724	SMG7	99	66.557	ENSSMAG00000006067	smg7	99	66.777	Scophthalmus_maximus
ENSCPBG00000015724	SMG7	96	73.533	ENSSDUG00000017543	smg7	100	66.212	Seriola_dumerili
ENSCPBG00000015724	SMG7	99	93.404	ENSSPUG00000002064	SMG7	99	93.404	Sphenodon_punctatus
ENSCPBG00000015724	SMG7	99	66.609	ENSSPAG00000008733	smg7	99	67.101	Stegastes_partitus
ENSCPBG00000015724	SMG7	100	88.403	ENSSSCG00000015558	SMG7	100	88.571	Sus_scrofa
ENSCPBG00000015724	SMG7	99	92.599	ENSTGUG00000003928	SMG7	100	92.599	Taeniopygia_guttata
ENSCPBG00000015724	SMG7	99	62.075	ENSTNIG00000002802	smg7	99	61.985	Tetraodon_nigroviridis
ENSCPBG00000015724	SMG7	78	91.561	ENSTBEG00000003220	SMG7	75	91.561	Tupaia_belangeri
ENSCPBG00000015724	SMG7	96	88.024	ENSTTRG00000014778	SMG7	94	88.199	Tursiops_truncatus
ENSCPBG00000015724	SMG7	96	87.067	ENSUAMG00000017473	SMG7	100	87.158	Ursus_americanus
ENSCPBG00000015724	SMG7	96	87.892	ENSUMAG00000016389	SMG7	100	88.240	Ursus_maritimus
ENSCPBG00000015724	SMG7	100	87.983	ENSVVUG00000008976	SMG7	100	89.899	Vulpes_vulpes
ENSCPBG00000015724	SMG7	100	71.466	ENSXETG00000012528	smg7	100	71.379	Xenopus_tropicalis
ENSCPBG00000015724	SMG7	99	64.914	ENSXMAG00000007123	smg7	99	65.547	Xiphophorus_maculatus