EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000015831 (Gene tree)
Gene ID: 101951921
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 70338 bases
Position: chrKK083060.1:2356789-2427126
Accession: 1915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000026244	ResIII	PF04851.15	3.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000030898	CHD1-209	2928	-	ENSCPBP00000026244	975 (aa)	-	-
ENSCPBT00000030439	CHD1-204	4929	-	ENSCPBP00000025835	1642 (aa)	-	-
ENSCPBT00000030276	CHD1-201	5124	-	ENSCPBP00000025712	1707 (aa)	-	-
ENSCPBT00000030427	CHD1-203	5016	-	ENSCPBP00000025829	1671 (aa)	-	-
ENSCPBT00000030422	CHD1-202	5118	-	ENSCPBP00000025826	1705 (aa)	-	-
ENSCPBT00000030698	CHD1-205	4542	-	ENSCPBP00000026068	1513 (aa)	-	-
ENSCPBT00000030799	CHD1-207	4627	-	ENSCPBP00000026151	1469 (aa)	-	-
ENSCPBT00000030795	CHD1-206	4083	-	ENSCPBP00000026147	1360 (aa)	-	-
ENSCPBT00000030807	CHD1-208	1623	-	ENSCPBP00000026157	540 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000015831's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000015831's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000015831	CHD1	82	72.944	ENSCPBG00000018049	-	95	72.976
ENSCPBG00000015831	CHD1	51	40.590	ENSCPBG00000027535	SMARCA5	50	40.590
ENSCPBG00000015831	CHD1	69	40.746	ENSCPBG00000011966	CHD3	62	39.740

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000015831	CHD1	78	79.877	ENSAPOG00000005764	chd1	69	80.074	Acanthochromis_polyacanthus
ENSCPBG00000015831	CHD1	86	77.055	ENSAOCG00000023105	chd1	55	77.055	Amphiprion_ocellaris
ENSCPBG00000015831	CHD1	86	79.019	ENSAPEG00000013544	chd1	55	79.019	Amphiprion_percula
ENSCPBG00000015831	CHD1	88	78.667	ENSATEG00000010676	chd1	55	78.771	Anabas_testudineus
ENSCPBG00000015831	CHD1	85	79.287	ENSAMXG00000010843	chd1	65	80.332	Astyanax_mexicanus
ENSCPBG00000015831	CHD1	99	84.470	ENSCATG00000032035	CHD1	55	88.781	Cercocebus_atys
ENSCPBG00000015831	CHD1	99	81.079	ENSCANG00000036916	CHD1	54	84.790	Colobus_angolensis_palliatus
ENSCPBG00000015831	CHD1	99	84.136	ENSCGRG00001023943	Chd1	59	83.615	Cricetulus_griseus_chok1gshd
ENSCPBG00000015831	CHD1	99	84.106	ENSCGRG00000008652	Chd1	59	83.615	Cricetulus_griseus_crigri
ENSCPBG00000015831	CHD1	86	78.400	ENSCSEG00000009553	chd1	56	78.400	Cynoglossus_semilaevis
ENSCPBG00000015831	CHD1	91	88.362	ENSEASG00005016110	CHD1	66	88.722	Equus_asinus_asinus
ENSCPBG00000015831	CHD1	86	77.627	ENSELUG00000017677	chd1	54	77.175	Esox_lucius
ENSCPBG00000015831	CHD1	86	78.458	ENSFHEG00000021164	chd1	64	78.271	Fundulus_heteroclitus
ENSCPBG00000015831	CHD1	93	87.394	ENSGALG00000031327	-	57	88.565	Gallus_gallus
ENSCPBG00000015831	CHD1	83	80.607	ENSHCOG00000014222	chd1	55	79.067	Hippocampus_comes
ENSCPBG00000015831	CHD1	82	81.969	ENSIPUG00000001369	chd1	55	79.977	Ictalurus_punctatus
ENSCPBG00000015831	CHD1	99	84.405	ENSMFAG00000031226	CHD1	54	88.781	Macaca_fascicularis
ENSCPBG00000015831	CHD1	99	84.405	ENSMNEG00000045073	CHD1	54	88.781	Macaca_nemestrina
ENSCPBG00000015831	CHD1	99	87.119	ENSMLEG00000041096	CHD1	58	85.358	Mandrillus_leucophaeus
ENSCPBG00000015831	CHD1	88	78.135	ENSMZEG00005010957	chd1	67	78.523	Maylandia_zebra
ENSCPBG00000015831	CHD1	55	77.080	ENSMGAG00000008369	-	75	77.080	Meleagris_gallopavo
ENSCPBG00000015831	CHD1	99	83.538	ENSMOCG00000019121	Chd1	55	88.077	Microtus_ochrogaster
ENSCPBG00000015831	CHD1	74	87.779	ENSMODG00000019266	-	99	87.516	Monodelphis_domestica
ENSCPBG00000015831	CHD1	99	83.633	MGP_PahariEiJ_G0023414	Chd1	93	83.019	Mus_pahari
ENSCPBG00000015831	CHD1	86	78.953	ENSNBRG00000006860	chd1	56	78.953	Neolamprologus_brichardi
ENSCPBG00000015831	CHD1	54	88.693	ENSOANG00000004891	CHD1	59	85.288	Ornithorhynchus_anatinus
ENSCPBG00000015831	CHD1	99	84.405	ENSPANG00000006387	CHD1	54	88.781	Papio_anubis
ENSCPBG00000015831	CHD1	86	72.645	ENSPKIG00000024719	chd1	52	72.241	Paramormyrops_kingsleyae
ENSCPBG00000015831	CHD1	88	78.603	ENSPMGG00000005785	chd1	67	78.635	Periophthalmus_magnuspinnatus
ENSCPBG00000015831	CHD1	99	83.554	ENSPEMG00000015939	Chd1	54	88.565	Peromyscus_maniculatus_bairdii
ENSCPBG00000015831	CHD1	99	83.633	ENSRNOG00000014434	Chd1	71	83.019	Rattus_norvegicus
ENSCPBG00000015831	CHD1	99	84.310	ENSRBIG00000044325	CHD1	56	88.781	Rhinopithecus_bieti
ENSCPBG00000015831	CHD1	99	84.375	ENSRROG00000001726	CHD1	55	88.781	Rhinopithecus_roxellana
ENSCPBG00000015831	CHD1	94	75.345	ENSSFOG00015007161	chd1	68	75.080	Scleropages_formosus
ENSCPBG00000015831	CHD1	86	78.418	ENSSLDG00000017244	chd1	88	78.418	Seriola_lalandi_dorsalis
ENSCPBG00000015831	CHD1	98	84.306	ENSSSCG00000014177	CHD1	63	88.507	Sus_scrofa
ENSCPBG00000015831	CHD1	94	71.772	ENSXCOG00000017184	chd1	52	80.190	Xiphophorus_couchianus