EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000015941 (Gene tree)
Gene ID: 101932391
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 19061 bases
Position: chrKK083156.1:752468-771528
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000022291	MMR_HSR1	PF01926.23	3.5e-14	1	1
ENSCPBP00000022293	MMR_HSR1	PF01926.23	4.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000026255	LSG1-202	2494	-	ENSCPBP00000022293	813 (aa)	-	-
ENSCPBT00000026253	LSG1-201	3422	-	ENSCPBP00000022291	789 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000015941's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000015941's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000015941	LSG1	83	69.688	ENSG00000041802	LSG1	98	78.161	Homo_sapiens
ENSCPBG00000015941	LSG1	83	65.809	ENSAPOG00000009694	lsg1	100	66.566	Acanthochromis_polyacanthus
ENSCPBG00000015941	LSG1	83	68.421	ENSAMEG00000009343	LSG1	100	68.421	Ailuropoda_melanoleuca
ENSCPBG00000015941	LSG1	82	65.850	ENSACIG00000012406	lsg1	100	66.667	Amphilophus_citrinellus
ENSCPBG00000015941	LSG1	83	65.559	ENSAOCG00000016066	lsg1	100	65.559	Amphiprion_ocellaris
ENSCPBG00000015941	LSG1	83	65.559	ENSAPEG00000003252	lsg1	100	65.559	Amphiprion_percula
ENSCPBG00000015941	LSG1	82	64.969	ENSATEG00000011794	lsg1	100	65.559	Anabas_testudineus
ENSCPBG00000015941	LSG1	79	65.938	ENSACAG00000004222	LSG1	100	65.934	Anolis_carolinensis
ENSCPBG00000015941	LSG1	83	69.880	ENSANAG00000021153	LSG1	99	68.703	Aotus_nancymaae
ENSCPBG00000015941	LSG1	83	65.588	ENSACLG00000000520	lsg1	100	66.368	Astatotilapia_calliptera
ENSCPBG00000015941	LSG1	83	66.617	ENSAMXG00000008271	lsg1	100	66.112	Astyanax_mexicanus
ENSCPBG00000015941	LSG1	83	69.545	ENSBTAG00000008461	LSG1	99	69.545	Bos_taurus
ENSCPBG00000015941	LSG1	56	51.777	WBGene00016907	C53H9.2	81	51.777	Caenorhabditis_elegans
ENSCPBG00000015941	LSG1	83	69.001	ENSCJAG00000013962	LSG1	99	68.405	Callithrix_jacchus
ENSCPBG00000015941	LSG1	79	69.904	ENSCAFG00000013445	LSG1	100	69.904	Canis_familiaris
ENSCPBG00000015941	LSG1	83	68.373	ENSCAFG00020002216	LSG1	99	69.489	Canis_lupus_dingo
ENSCPBG00000015941	LSG1	83	69.440	ENSCHIG00000015769	LSG1	100	69.894	Capra_hircus
ENSCPBG00000015941	LSG1	83	70.091	ENSTSYG00000001447	LSG1	99	70.091	Carlito_syrichta
ENSCPBG00000015941	LSG1	79	67.512	ENSCAPG00000009856	LSG1	99	67.994	Cavia_aperea
ENSCPBG00000015941	LSG1	83	70.331	ENSCCAG00000035744	LSG1	99	70.331	Cebus_capucinus
ENSCPBG00000015941	LSG1	86	68.201	ENSCATG00000042060	LSG1	99	68.563	Cercocebus_atys
ENSCPBG00000015941	LSG1	86	67.867	ENSCSAG00000008796	LSG1	95	68.559	Chlorocebus_sabaeus
ENSCPBG00000015941	LSG1	59	56.039	ENSCING00000007079	-	99	56.039	Ciona_intestinalis
ENSCPBG00000015941	LSG1	58	57.868	ENSCSAVG00000002514	-	92	57.000	Ciona_savignyi
ENSCPBG00000015941	LSG1	83	69.311	ENSCANG00000030709	LSG1	99	68.713	Colobus_angolensis_palliatus
ENSCPBG00000015941	LSG1	83	68.524	ENSCGRG00001019846	Lsg1	99	69.138	Cricetulus_griseus_chok1gshd
ENSCPBG00000015941	LSG1	83	68.524	ENSCGRG00000014617	Lsg1	99	69.138	Cricetulus_griseus_crigri
ENSCPBG00000015941	LSG1	82	64.902	ENSCSEG00000008522	lsg1	100	63.824	Cynoglossus_semilaevis
ENSCPBG00000015941	LSG1	82	67.597	ENSCVAG00000002484	lsg1	100	67.066	Cyprinodon_variegatus
ENSCPBG00000015941	LSG1	83	65.913	ENSDARG00000015352	lsg1	100	65.913	Danio_rerio
ENSCPBG00000015941	LSG1	83	68.722	ENSDNOG00000006224	LSG1	99	66.568	Dasypus_novemcinctus
ENSCPBG00000015941	LSG1	68	58.264	FBgn0266284	Ns3	99	45.753	Drosophila_melanogaster
ENSCPBG00000015941	LSG1	73	69.333	ENSETEG00000003888	LSG1	89	69.333	Echinops_telfairi
ENSCPBG00000015941	LSG1	74	57.022	ENSEBUG00000003119	lsg1	85	55.740	Eptatretus_burgeri
ENSCPBG00000015941	LSG1	83	69.894	ENSEASG00005000678	LSG1	99	69.894	Equus_asinus_asinus
ENSCPBG00000015941	LSG1	83	70.348	ENSECAG00000017659	LSG1	99	70.348	Equus_caballus
ENSCPBG00000015941	LSG1	72	66.102	ENSEEUG00000015217	LSG1	87	66.102	Erinaceus_europaeus
ENSCPBG00000015941	LSG1	83	64.458	ENSELUG00000023973	lsg1	100	63.910	Esox_lucius
ENSCPBG00000015941	LSG1	83	69.138	ENSFCAG00000024957	LSG1	100	69.138	Felis_catus
ENSCPBG00000015941	LSG1	77	70.684	ENSFALG00000007210	LSG1	94	70.684	Ficedula_albicollis
ENSCPBG00000015941	LSG1	83	66.617	ENSFDAG00000017373	LSG1	99	67.372	Fukomys_damarensis
ENSCPBG00000015941	LSG1	82	64.706	ENSFHEG00000003680	lsg1	100	64.857	Fundulus_heteroclitus
ENSCPBG00000015941	LSG1	70	72.157	ENSGMOG00000015834	lsg1	90	70.724	Gadus_morhua
ENSCPBG00000015941	LSG1	83	71.429	ENSGALG00000007058	LSG1	87	72.644	Gallus_gallus
ENSCPBG00000015941	LSG1	81	65.581	ENSGAFG00000015831	lsg1	100	65.512	Gambusia_affinis
ENSCPBG00000015941	LSG1	82	65.237	ENSGACG00000009323	lsg1	100	64.072	Gasterosteus_aculeatus
ENSCPBG00000015941	LSG1	83	69.910	ENSGGOG00000000520	LSG1	99	68.899	Gorilla_gorilla
ENSCPBG00000015941	LSG1	83	65.634	ENSHBUG00000005659	lsg1	100	66.417	Haplochromis_burtoni
ENSCPBG00000015941	LSG1	83	64.574	ENSHGLG00000017390	LSG1	99	64.275	Heterocephalus_glaber_female
ENSCPBG00000015941	LSG1	83	64.574	ENSHGLG00100018587	LSG1	99	64.275	Heterocephalus_glaber_male
ENSCPBG00000015941	LSG1	82	63.206	ENSHCOG00000016848	lsg1	100	63.174	Hippocampus_comes
ENSCPBG00000015941	LSG1	83	67.171	ENSIPUG00000008631	lsg1	100	66.717	Ictalurus_punctatus
ENSCPBG00000015941	LSG1	63	63.762	ENSSTOG00000010234	LSG1	92	64.554	Ictidomys_tridecemlineatus
ENSCPBG00000015941	LSG1	83	68.429	ENSJJAG00000015513	Lsg1	99	68.429	Jaculus_jaculus
ENSCPBG00000015941	LSG1	82	64.099	ENSKMAG00000009681	lsg1	100	63.897	Kryptolebias_marmoratus
ENSCPBG00000015941	LSG1	82	63.679	ENSLBEG00000024261	lsg1	100	63.939	Labrus_bergylta
ENSCPBG00000015941	LSG1	83	71.235	ENSLACG00000013399	LSG1	100	71.235	Latimeria_chalumnae
ENSCPBG00000015941	LSG1	82	67.123	ENSLOCG00000004918	lsg1	100	66.418	Lepisosteus_oculatus
ENSCPBG00000015941	LSG1	83	68.485	ENSLAFG00000012919	-	99	68.333	Loxodonta_africana
ENSCPBG00000015941	LSG1	86	67.867	ENSMFAG00000039903	LSG1	99	68.216	Macaca_fascicularis
ENSCPBG00000015941	LSG1	83	69.265	ENSMMUG00000010708	LSG1	99	69.265	Macaca_mulatta
ENSCPBG00000015941	LSG1	86	67.723	ENSMNEG00000031538	LSG1	99	67.916	Macaca_nemestrina
ENSCPBG00000015941	LSG1	83	69.115	ENSMLEG00000041184	LSG1	99	69.115	Mandrillus_leucophaeus
ENSCPBG00000015941	LSG1	83	65.758	ENSMAMG00000000470	lsg1	100	65.455	Mastacembelus_armatus
ENSCPBG00000015941	LSG1	83	65.782	ENSMZEG00005017865	lsg1	100	66.567	Maylandia_zebra
ENSCPBG00000015941	LSG1	74	73.765	ENSMGAG00000007050	LSG1	99	73.765	Meleagris_gallopavo
ENSCPBG00000015941	LSG1	76	66.942	ENSMAUG00000016976	Lsg1	99	64.319	Mesocricetus_auratus
ENSCPBG00000015941	LSG1	83	67.771	ENSMICG00000049087	LSG1	99	67.771	Microcebus_murinus
ENSCPBG00000015941	LSG1	83	68.326	ENSMOCG00000022136	Lsg1	99	67.771	Microtus_ochrogaster
ENSCPBG00000015941	LSG1	69	74.583	ENSMMOG00000008884	lsg1	99	72.368	Mola_mola
ENSCPBG00000015941	LSG1	82	58.021	ENSMODG00000019828	LSG1	98	56.130	Monodelphis_domestica
ENSCPBG00000015941	LSG1	83	68.852	MGP_CAROLIEiJ_G0020648	Lsg1	100	68.955	Mus_caroli
ENSCPBG00000015941	LSG1	83	68.945	ENSMUSG00000022538	Lsg1	100	69.037	Mus_musculus
ENSCPBG00000015941	LSG1	82	70.200	MGP_PahariEiJ_G0016352	Lsg1	100	69.729	Mus_pahari
ENSCPBG00000015941	LSG1	83	68.945	MGP_SPRETEiJ_G0021544	Lsg1	100	68.945	Mus_spretus
ENSCPBG00000015941	LSG1	83	67.820	ENSMPUG00000003734	LSG1	100	67.820	Mustela_putorius_furo
ENSCPBG00000015941	LSG1	83	70.091	ENSMLUG00000012548	LSG1	100	70.091	Myotis_lucifugus
ENSCPBG00000015941	LSG1	83	68.636	ENSNGAG00000021872	Lsg1	99	67.722	Nannospalax_galili
ENSCPBG00000015941	LSG1	83	69.715	ENSNLEG00000008293	LSG1	99	69.115	Nomascus_leucogenys
ENSCPBG00000015941	LSG1	57	74.227	ENSMEUG00000009041	-	82	74.227	Notamacropus_eugenii
ENSCPBG00000015941	LSG1	83	65.579	ENSONIG00000002635	lsg1	100	66.617	Oreochromis_niloticus
ENSCPBG00000015941	LSG1	79	73.968	ENSOANG00000012742	LSG1	99	73.968	Ornithorhynchus_anatinus
ENSCPBG00000015941	LSG1	83	69.127	ENSOCUG00000004817	LSG1	99	69.127	Oryctolagus_cuniculus
ENSCPBG00000015941	LSG1	82	65.385	ENSORLG00000007695	lsg1	100	64.857	Oryzias_latipes
ENSCPBG00000015941	LSG1	82	64.154	ENSORLG00020016286	lsg1	100	63.801	Oryzias_latipes_hni
ENSCPBG00000015941	LSG1	82	64.462	ENSORLG00015012025	lsg1	100	65.008	Oryzias_latipes_hsok
ENSCPBG00000015941	LSG1	82	64.869	ENSOMEG00000022379	lsg1	100	64.502	Oryzias_melastigma
ENSCPBG00000015941	LSG1	83	69.474	ENSOGAG00000003475	LSG1	99	69.670	Otolemur_garnettii
ENSCPBG00000015941	LSG1	83	69.789	ENSOARG00000020403	LSG1	100	69.789	Ovis_aries
ENSCPBG00000015941	LSG1	83	71.729	ENSPPAG00000029271	LSG1	99	70.210	Pan_paniscus
ENSCPBG00000015941	LSG1	83	68.713	ENSPPRG00000010281	LSG1	100	68.713	Panthera_pardus
ENSCPBG00000015941	LSG1	83	69.440	ENSPTIG00000010789	LSG1	100	69.440	Panthera_tigris_altaica
ENSCPBG00000015941	LSG1	83	70.958	ENSPTRG00000015760	LSG1	99	70.060	Pan_troglodytes
ENSCPBG00000015941	LSG1	86	68.201	ENSPANG00000018249	LSG1	99	68.563	Papio_anubis
ENSCPBG00000015941	LSG1	83	64.955	ENSPKIG00000002895	lsg1	99	64.955	Paramormyrops_kingsleyae
ENSCPBG00000015941	LSG1	80	77.429	ENSPSIG00000009821	LSG1	99	76.332	Pelodiscus_sinensis
ENSCPBG00000015941	LSG1	79	65.348	ENSPMGG00000000931	lsg1	100	65.032	Periophthalmus_magnuspinnatus
ENSCPBG00000015941	LSG1	83	69.403	ENSPEMG00000012082	-	99	68.694	Peromyscus_maniculatus_bairdii
ENSCPBG00000015941	LSG1	83	61.095	ENSPMAG00000007451	lsg1	99	61.004	Petromyzon_marinus
ENSCPBG00000015941	LSG1	86	66.842	ENSPCIG00000013890	LSG1	84	66.842	Phascolarctos_cinereus
ENSCPBG00000015941	LSG1	81	67.028	ENSPFOG00000021882	lsg1	100	66.416	Poecilia_formosa
ENSCPBG00000015941	LSG1	82	66.410	ENSPLAG00000019536	lsg1	100	65.964	Poecilia_latipinna
ENSCPBG00000015941	LSG1	81	66.204	ENSPMEG00000017281	lsg1	100	65.616	Poecilia_mexicana
ENSCPBG00000015941	LSG1	81	56.753	ENSPREG00000006048	lsg1	100	57.249	Poecilia_reticulata
ENSCPBG00000015941	LSG1	77	68.344	ENSPPYG00000014425	LSG1	100	67.370	Pongo_abelii
ENSCPBG00000015941	LSG1	75	68.000	ENSPCAG00000005511	LSG1	90	68.000	Procavia_capensis
ENSCPBG00000015941	LSG1	83	68.636	ENSPCOG00000012360	LSG1	99	68.636	Propithecus_coquereli
ENSCPBG00000015941	LSG1	83	65.588	ENSPNYG00000021994	lsg1	100	66.368	Pundamilia_nyererei
ENSCPBG00000015941	LSG1	83	66.817	ENSPNAG00000015533	lsg1	100	66.416	Pygocentrus_nattereri
ENSCPBG00000015941	LSG1	83	69.598	ENSRNOG00000001727	Lsg1	100	70.045	Rattus_norvegicus
ENSCPBG00000015941	LSG1	83	69.162	ENSRBIG00000029053	LSG1	99	68.563	Rhinopithecus_bieti
ENSCPBG00000015941	LSG1	83	69.162	ENSRROG00000037702	LSG1	99	68.563	Rhinopithecus_roxellana
ENSCPBG00000015941	LSG1	52	55.294	YGL099W	LSG1	65	55.294	Saccharomyces_cerevisiae
ENSCPBG00000015941	LSG1	83	69.428	ENSSBOG00000034938	LSG1	99	68.405	Saimiri_boliviensis_boliviensis
ENSCPBG00000015941	LSG1	65	66.604	ENSSHAG00000003487	LSG1	100	66.226	Sarcophilus_harrisii
ENSCPBG00000015941	LSG1	82	66.667	ENSSFOG00015008955	lsg1	100	65.667	Scleropages_formosus
ENSCPBG00000015941	LSG1	82	65.794	ENSSDUG00000004622	lsg1	100	66.314	Seriola_dumerili
ENSCPBG00000015941	LSG1	82	65.533	ENSSLDG00000010869	lsg1	100	65.909	Seriola_lalandi_dorsalis
ENSCPBG00000015941	LSG1	68	70.058	ENSSARG00000012981	LSG1	81	70.058	Sorex_araneus
ENSCPBG00000015941	LSG1	83	73.763	ENSSPUG00000016347	LSG1	100	72.714	Sphenodon_punctatus
ENSCPBG00000015941	LSG1	83	68.533	ENSSSCG00000011827	LSG1	100	68.533	Sus_scrofa
ENSCPBG00000015941	LSG1	74	71.044	ENSTGUG00000009068	LSG1	99	71.886	Taeniopygia_guttata
ENSCPBG00000015941	LSG1	82	61.692	ENSTRUG00000017380	lsg1	100	60.299	Takifugu_rubripes
ENSCPBG00000015941	LSG1	82	64.462	ENSTNIG00000015570	lsg1	100	64.555	Tetraodon_nigroviridis
ENSCPBG00000015941	LSG1	76	73.333	ENSTTRG00000000559	LSG1	91	73.333	Tursiops_truncatus
ENSCPBG00000015941	LSG1	83	69.080	ENSUAMG00000012454	LSG1	100	69.382	Ursus_americanus
ENSCPBG00000015941	LSG1	83	69.080	ENSUMAG00000000855	LSG1	100	69.382	Ursus_maritimus
ENSCPBG00000015941	LSG1	79	68.153	ENSVPAG00000012400	LSG1	100	67.834	Vicugna_pacos
ENSCPBG00000015941	LSG1	79	69.108	ENSVVUG00000008956	LSG1	97	69.108	Vulpes_vulpes
ENSCPBG00000015941	LSG1	83	68.816	ENSXETG00000003451	lsg1	100	69.832	Xenopus_tropicalis
ENSCPBG00000015941	LSG1	81	65.688	ENSXCOG00000003239	lsg1	100	65.512	Xiphophorus_couchianus
ENSCPBG00000015941	LSG1	81	65.053	ENSXMAG00000005536	lsg1	100	65.487	Xiphophorus_maculatus