EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000017056 (Gene tree)
Gene ID: 101952102
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 30922 bases
Position: chrKK082985.1:306534-337455
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000023924	MMR_HSR1	PF01926.23	3.6e-07	1	1
ENSCPBP00000023926	MMR_HSR1	PF01926.23	7.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000028180	-	2556	-	ENSCPBP00000023924	218 (aa)	XP_005283838	UPI00003AC9C5
ENSCPBT00000028182	-	2360	-	ENSCPBP00000023925	239 (aa)	-	-
ENSCPBT00000028183	-	2358	-	ENSCPBP00000023926	229 (aa)	XP_005283837	UPI000388C4C8

Gene Model

Click here to download ENSCPBG00000017056's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000017056's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000017056	-	74	48.148	ENSCPBG00000015839	-	78	48.148
ENSCPBG00000017056	-	75	33.537	ENSCPBG00000018286	RHEB	89	33.537
ENSCPBG00000017056	-	94	42.308	ENSCPBG00000012712	RAB5B	91	42.308
ENSCPBG00000017056	-	73	35.000	ENSCPBG00000022640	RAB23	75	34.637
ENSCPBG00000017056	-	54	31.148	ENSCPBG00000024120	ARL4A	60	31.148
ENSCPBG00000017056	-	50	32.500	ENSCPBG00000016255	ARL4D	58	32.500
ENSCPBG00000017056	-	79	46.857	ENSCPBG00000001057	RAB39B	82	46.857
ENSCPBG00000017056	-	80	43.429	ENSCPBG00000016907	RAB15	83	42.938
ENSCPBG00000017056	-	74	33.537	ENSCPBG00000020275	RAB34	65	34.706
ENSCPBG00000017056	-	96	40.000	ENSCPBG00000006855	RAB30	97	40.000
ENSCPBG00000017056	-	72	36.943	ENSCPBG00000000041	RAB6A	77	35.404
ENSCPBG00000017056	-	74	35.152	ENSCPBG00000028244	RERG	81	35.152
ENSCPBG00000017056	-	88	37.824	ENSCPBG00000011245	RAB42	97	37.824
ENSCPBG00000017056	-	72	36.943	ENSCPBG00000014340	RAB41	76	35.404
ENSCPBG00000017056	-	72	40.491	ENSCPBG00000014343	RAB7A	80	39.521
ENSCPBG00000017056	-	82	31.285	ENSCPBG00000022721	RRAS2	88	31.285
ENSCPBG00000017056	-	100	89.908	ENSCPBG00000014614	RAB11A	100	89.908
ENSCPBG00000017056	-	72	37.580	ENSCPBG00000011715	-	68	37.580
ENSCPBG00000017056	-	70	35.484	ENSCPBG00000016544	NRAS	87	36.527
ENSCPBG00000017056	-	77	41.040	ENSCPBG00000001542	RAB9B	86	41.040
ENSCPBG00000017056	-	81	40.110	ENSCPBG00000016033	RAB9A	80	40.110
ENSCPBG00000017056	-	100	60.909	ENSCPBG00000025817	RAB25	100	60.909
ENSCPBG00000017056	-	94	78.049	ENSCPBG00000025819	-	99	78.049
ENSCPBG00000017056	-	78	39.205	ENSCPBG00000027605	RAB33B	77	39.205
ENSCPBG00000017056	-	80	40.223	ENSCPBG00000012042	RAB33A	70	40.223
ENSCPBG00000017056	-	72	32.911	ENSCPBG00000013681	MRAS	82	35.227
ENSCPBG00000017056	-	94	43.204	ENSCPBG00000022559	RAB5A	91	43.204
ENSCPBG00000017056	-	80	52.299	ENSCPBG00000009941	RAB14	81	52.299
ENSCPBG00000017056	-	80	51.149	ENSCPBG00000013243	RAB1A	85	51.149
ENSCPBG00000017056	-	93	34.597	ENSCPBG00000002289	RAB36	67	34.597
ENSCPBG00000017056	-	94	36.538	ENSCPBG00000011236	-	94	36.538
ENSCPBG00000017056	-	77	44.970	ENSCPBG00000011914	RAB19	79	44.970
ENSCPBG00000017056	-	68	34.000	ENSCPBG00000009289	-	85	35.185
ENSCPBG00000017056	-	76	42.515	ENSCPBG00000028375	RAB12	69	42.941
ENSCPBG00000017056	-	75	46.341	ENSCPBG00000027619	-	81	46.341
ENSCPBG00000017056	-	53	30.769	ENSCPBG00000018327	ARL14	61	30.769
ENSCPBG00000017056	-	72	43.949	ENSCPBG00000023927	RAB22A	81	43.949
ENSCPBG00000017056	-	78	56.140	ENSCPBG00000012691	RAB2B	80	56.140
ENSCPBG00000017056	-	76	53.614	ENSCPBG00000022446	RAB1B	83	53.614
ENSCPBG00000017056	-	89	31.500	ENSCPBG00000021406	RAB6B	94	30.392
ENSCPBG00000017056	-	78	54.971	ENSCPBG00000023254	RAB2A	81	54.971
ENSCPBG00000017056	-	78	34.503	ENSCPBG00000013941	-	94	35.519
ENSCPBG00000017056	-	68	36.667	ENSCPBG00000015094	-	86	37.654
ENSCPBG00000017056	-	76	48.193	ENSCPBG00000012631	RAB35	99	41.627

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000017056	-	100	97.248	ENSAPOG00000023455	rab11bb	100	97.248	Acanthochromis_polyacanthus
ENSCPBG00000017056	-	100	97.706	ENSACIG00000024376	-	100	97.706	Amphilophus_citrinellus
ENSCPBG00000017056	-	100	84.862	ENSACIG00000019631	rab11bb	100	84.862	Amphilophus_citrinellus
ENSCPBG00000017056	-	100	97.706	ENSAOCG00000018849	-	100	97.706	Amphiprion_ocellaris
ENSCPBG00000017056	-	100	97.248	ENSAOCG00000018239	rab11bb	100	97.248	Amphiprion_ocellaris
ENSCPBG00000017056	-	100	97.248	ENSAPEG00000016590	rab11bb	100	97.248	Amphiprion_percula
ENSCPBG00000017056	-	100	97.248	ENSATEG00000017696	rab11bb	100	97.248	Anabas_testudineus
ENSCPBG00000017056	-	100	97.248	ENSATEG00000023725	-	100	97.248	Anabas_testudineus
ENSCPBG00000017056	-	96	99.043	ENSAPLG00000011046	-	96	99.043	Anas_platyrhynchos
ENSCPBG00000017056	-	100	97.248	ENSACLG00000007076	rab11bb	100	97.248	Astatotilapia_calliptera
ENSCPBG00000017056	-	100	97.706	ENSACLG00000005446	-	100	97.706	Astatotilapia_calliptera
ENSCPBG00000017056	-	100	98.624	ENSAMXG00000042655	rab11bb	100	98.624	Astyanax_mexicanus
ENSCPBG00000017056	-	100	97.706	ENSAMXG00000037623	-	100	97.706	Astyanax_mexicanus
ENSCPBG00000017056	-	100	98.624	ENSBTAG00000002475	RAB11B	100	98.624	Bos_taurus
ENSCPBG00000017056	-	96	96.651	ENSCHIG00000022426	-	100	91.071	Capra_hircus
ENSCPBG00000017056	-	100	98.624	ENSCATG00000029188	-	100	98.624	Cercocebus_atys
ENSCPBG00000017056	-	100	97.248	ENSCSEG00000007239	-	100	97.248	Cynoglossus_semilaevis
ENSCPBG00000017056	-	100	97.248	ENSCSEG00000012149	rab11bb	100	97.248	Cynoglossus_semilaevis
ENSCPBG00000017056	-	100	97.248	ENSCVAG00000017021	-	100	97.248	Cyprinodon_variegatus
ENSCPBG00000017056	-	100	96.789	ENSCVAG00000019718	-	100	96.789	Cyprinodon_variegatus
ENSCPBG00000017056	-	100	95.413	ENSCVAG00000019751	-	100	95.413	Cyprinodon_variegatus
ENSCPBG00000017056	-	100	98.165	ENSDARG00000090086	rab11bb	100	98.165	Danio_rerio
ENSCPBG00000017056	-	99	96.313	ENSETEG00000000905	-	99	96.313	Echinops_telfairi
ENSCPBG00000017056	-	99	94.884	ENSEASG00005003708	-	99	94.884	Equus_asinus_asinus
ENSCPBG00000017056	-	99	94.884	ENSECAG00000000716	RAB11B	99	94.884	Equus_caballus
ENSCPBG00000017056	-	100	97.248	ENSELUG00000021148	rab11bb	100	97.248	Esox_lucius
ENSCPBG00000017056	-	100	96.789	ENSELUG00000000916	-	100	96.789	Esox_lucius
ENSCPBG00000017056	-	100	96.789	ENSELUG00000020948	-	98	98.438	Esox_lucius
ENSCPBG00000017056	-	100	100.000	ENSFALG00000011828	-	100	100.000	Ficedula_albicollis
ENSCPBG00000017056	-	100	97.248	ENSFHEG00000018353	rab11bb	100	97.248	Fundulus_heteroclitus
ENSCPBG00000017056	-	100	97.248	ENSFHEG00000022676	-	100	97.248	Fundulus_heteroclitus
ENSCPBG00000017056	-	99	93.519	ENSGMOG00000009668	-	99	93.519	Gadus_morhua
ENSCPBG00000017056	-	100	97.248	ENSGMOG00000009211	rab11bb	100	97.248	Gadus_morhua
ENSCPBG00000017056	-	100	100.000	ENSGALG00000000613	RAB11B	100	100.000	Gallus_gallus
ENSCPBG00000017056	-	100	97.248	ENSGAFG00000007102	rab11bb	100	97.248	Gambusia_affinis
ENSCPBG00000017056	-	100	96.789	ENSGACG00000015479	rab11bb	100	96.789	Gasterosteus_aculeatus
ENSCPBG00000017056	-	100	95.413	ENSGACG00000013297	-	99	95.413	Gasterosteus_aculeatus
ENSCPBG00000017056	-	100	98.624	ENSGGOG00000014516	RAB11B	100	98.624	Gorilla_gorilla
ENSCPBG00000017056	-	100	97.706	ENSHBUG00000009947	-	100	97.706	Haplochromis_burtoni
ENSCPBG00000017056	-	100	97.248	ENSHBUG00000014777	rab11bb	100	97.248	Haplochromis_burtoni
ENSCPBG00000017056	-	100	92.202	ENSHCOG00000000985	-	100	92.202	Hippocampus_comes
ENSCPBG00000017056	-	100	95.413	ENSHCOG00000000954	-	100	95.413	Hippocampus_comes
ENSCPBG00000017056	-	100	97.706	ENSHCOG00000002423	rab11bb	100	97.706	Hippocampus_comes
ENSCPBG00000017056	-	100	98.165	ENSIPUG00000019927	rab11bb	100	98.165	Ictalurus_punctatus
ENSCPBG00000017056	-	100	98.165	ENSIPUG00000025100	rab11b	100	98.165	Ictalurus_punctatus
ENSCPBG00000017056	-	100	97.706	ENSKMAG00000006170	-	100	97.706	Kryptolebias_marmoratus
ENSCPBG00000017056	-	100	97.248	ENSKMAG00000009033	rab11bb	100	97.248	Kryptolebias_marmoratus
ENSCPBG00000017056	-	100	97.248	ENSLBEG00000004172	-	100	97.248	Labrus_bergylta
ENSCPBG00000017056	-	100	89.908	ENSLBEG00000005981	-	100	89.908	Labrus_bergylta
ENSCPBG00000017056	-	100	96.789	ENSLBEG00000015248	rab11bb	100	96.789	Labrus_bergylta
ENSCPBG00000017056	-	100	100.000	ENSLACG00000016857	-	100	100.000	Latimeria_chalumnae
ENSCPBG00000017056	-	100	98.624	ENSMFAG00000003654	RAB11B	100	98.624	Macaca_fascicularis
ENSCPBG00000017056	-	100	98.624	ENSMLEG00000030601	-	100	98.624	Mandrillus_leucophaeus
ENSCPBG00000017056	-	100	96.789	ENSMAMG00000006378	rab11bb	100	96.789	Mastacembelus_armatus
ENSCPBG00000017056	-	100	96.330	ENSMAMG00000018533	-	100	96.330	Mastacembelus_armatus
ENSCPBG00000017056	-	100	97.248	ENSMZEG00005003352	rab11bb	100	97.248	Maylandia_zebra
ENSCPBG00000017056	-	100	97.706	ENSMZEG00005010975	-	100	97.706	Maylandia_zebra
ENSCPBG00000017056	-	100	98.624	ENSMICG00000034065	-	100	98.624	Microcebus_murinus
ENSCPBG00000017056	-	94	98.049	ENSMMOG00000007917	rab11bb	100	98.049	Mola_mola
ENSCPBG00000017056	-	100	97.706	ENSMMOG00000001250	-	100	97.706	Mola_mola
ENSCPBG00000017056	-	99	96.313	ENSMMOG00000001238	-	99	96.313	Mola_mola
ENSCPBG00000017056	-	100	100.000	ENSMODG00000003841	-	100	100.000	Monodelphis_domestica
ENSCPBG00000017056	-	100	97.248	ENSMALG00000022187	rab11bb	100	97.248	Monopterus_albus
ENSCPBG00000017056	-	94	89.372	ENSMLUG00000006677	-	100	89.372	Myotis_lucifugus
ENSCPBG00000017056	-	100	97.248	ENSNBRG00000000372	rab11bb	100	97.248	Neolamprologus_brichardi
ENSCPBG00000017056	-	100	97.706	ENSNBRG00000023885	-	100	97.706	Neolamprologus_brichardi
ENSCPBG00000017056	-	100	100.000	ENSMEUG00000003686	-	100	100.000	Notamacropus_eugenii
ENSCPBG00000017056	-	100	97.248	ENSONIG00000010435	rab11bb	100	97.248	Oreochromis_niloticus
ENSCPBG00000017056	-	100	97.706	ENSONIG00000002544	-	100	97.706	Oreochromis_niloticus
ENSCPBG00000017056	-	50	98.165	ENSOANG00000031567	-	83	93.913	Ornithorhynchus_anatinus
ENSCPBG00000017056	-	100	96.789	ENSORLG00000013938	rab11bb	100	96.789	Oryzias_latipes
ENSCPBG00000017056	-	99	95.853	ENSORLG00000015284	-	72	95.853	Oryzias_latipes
ENSCPBG00000017056	-	99	95.853	ENSORLG00020020844	RAB11B	99	95.853	Oryzias_latipes_hni
ENSCPBG00000017056	-	100	96.789	ENSORLG00020019393	rab11bb	100	96.789	Oryzias_latipes_hni
ENSCPBG00000017056	-	99	95.853	ENSORLG00015016999	RAB11B	99	95.853	Oryzias_latipes_hsok
ENSCPBG00000017056	-	100	96.789	ENSORLG00015020173	rab11bb	100	96.789	Oryzias_latipes_hsok
ENSCPBG00000017056	-	100	96.789	ENSOMEG00000002562	-	100	96.789	Oryzias_melastigma
ENSCPBG00000017056	-	100	97.248	ENSOMEG00000017806	-	100	97.248	Oryzias_melastigma
ENSCPBG00000017056	-	100	98.624	ENSPPAG00000028589	-	100	98.624	Pan_paniscus
ENSCPBG00000017056	-	100	98.624	ENSPTRG00000010422	RAB11B	100	98.624	Pan_troglodytes
ENSCPBG00000017056	-	100	98.624	ENSPANG00000007765	-	100	98.624	Papio_anubis
ENSCPBG00000017056	-	98	98.131	ENSPKIG00000001389	-	69	98.131	Paramormyrops_kingsleyae
ENSCPBG00000017056	-	100	97.248	ENSPKIG00000011640	rab11bb	100	97.248	Paramormyrops_kingsleyae
ENSCPBG00000017056	-	100	98.624	ENSPKIG00000011703	-	100	98.624	Paramormyrops_kingsleyae
ENSCPBG00000017056	-	98	94.521	ENSPSIG00000010242	-	83	96.729	Pelodiscus_sinensis
ENSCPBG00000017056	-	99	93.548	ENSPMGG00000014336	-	99	93.548	Periophthalmus_magnuspinnatus
ENSCPBG00000017056	-	100	95.872	ENSPMGG00000014333	-	100	95.872	Periophthalmus_magnuspinnatus
ENSCPBG00000017056	-	100	97.248	ENSPMGG00000009435	rab11bb	100	97.248	Periophthalmus_magnuspinnatus
ENSCPBG00000017056	-	97	97.642	ENSPCIG00000020371	-	99	97.642	Phascolarctos_cinereus
ENSCPBG00000017056	-	100	97.706	ENSPFOG00000006224	-	100	97.706	Poecilia_formosa
ENSCPBG00000017056	-	100	97.248	ENSPFOG00000024114	-	100	97.248	Poecilia_formosa
ENSCPBG00000017056	-	100	97.706	ENSPLAG00000014207	-	100	97.706	Poecilia_latipinna
ENSCPBG00000017056	-	100	97.248	ENSPLAG00000001598	rab11bb	100	97.248	Poecilia_latipinna
ENSCPBG00000017056	-	100	97.248	ENSPMEG00000012389	rab11bb	100	97.248	Poecilia_mexicana
ENSCPBG00000017056	-	100	97.706	ENSPMEG00000007842	-	100	97.706	Poecilia_mexicana
ENSCPBG00000017056	-	100	97.248	ENSPREG00000006336	-	100	97.248	Poecilia_reticulata
ENSCPBG00000017056	-	100	97.248	ENSPREG00000014269	rab11bb	100	97.248	Poecilia_reticulata
ENSCPBG00000017056	-	100	97.706	ENSPNYG00000019611	-	100	97.706	Pundamilia_nyererei
ENSCPBG00000017056	-	100	97.248	ENSPNYG00000004098	rab11bb	100	97.248	Pundamilia_nyererei
ENSCPBG00000017056	-	100	98.624	ENSRROG00000037812	-	100	98.624	Rhinopithecus_roxellana
ENSCPBG00000017056	-	97	98.113	ENSSHAG00000006816	-	97	98.113	Sarcophilus_harrisii
ENSCPBG00000017056	-	100	73.394	ENSSFOG00015006245	-	100	73.394	Scleropages_formosus
ENSCPBG00000017056	-	100	98.624	ENSSFOG00015009042	rab11bb	100	98.624	Scleropages_formosus
ENSCPBG00000017056	-	100	96.789	ENSSMAG00000004922	rab11bb	100	96.789	Scophthalmus_maximus
ENSCPBG00000017056	-	100	94.037	ENSSMAG00000018613	-	100	94.037	Scophthalmus_maximus
ENSCPBG00000017056	-	100	97.706	ENSSDUG00000002934	-	100	97.706	Seriola_dumerili
ENSCPBG00000017056	-	100	97.248	ENSSDUG00000013558	rab11bb	100	97.248	Seriola_dumerili
ENSCPBG00000017056	-	100	97.706	ENSSLDG00000005275	-	100	97.706	Seriola_lalandi_dorsalis
ENSCPBG00000017056	-	100	97.248	ENSSLDG00000020676	rab11bb	100	97.248	Seriola_lalandi_dorsalis
ENSCPBG00000017056	-	100	99.541	ENSSPUG00000002243	-	100	99.541	Sphenodon_punctatus
ENSCPBG00000017056	-	100	97.248	ENSSPAG00000011419	rab11bb	100	97.248	Stegastes_partitus
ENSCPBG00000017056	-	100	97.706	ENSSPAG00000014559	-	100	97.706	Stegastes_partitus
ENSCPBG00000017056	-	100	100.000	ENSTGUG00000000084	-	100	100.000	Taeniopygia_guttata
ENSCPBG00000017056	-	100	97.248	ENSTRUG00000022029	rab11bb	100	97.248	Takifugu_rubripes
ENSCPBG00000017056	-	99	97.685	ENSTRUG00000021619	-	100	97.685	Takifugu_rubripes
ENSCPBG00000017056	-	99	95.392	ENSTRUG00000021614	-	99	95.392	Takifugu_rubripes
ENSCPBG00000017056	-	93	96.059	ENSTNIG00000002003	-	100	96.059	Tetraodon_nigroviridis
ENSCPBG00000017056	-	100	96.330	ENSTNIG00000011081	rab11bb	100	96.330	Tetraodon_nigroviridis
ENSCPBG00000017056	-	99	94.931	ENSTNIG00000013184	-	99	94.931	Tetraodon_nigroviridis
ENSCPBG00000017056	-	99	97.685	ENSTNIG00000013182	-	100	97.685	Tetraodon_nigroviridis
ENSCPBG00000017056	-	94	98.537	ENSUAMG00000006639	-	99	98.537	Ursus_americanus
ENSCPBG00000017056	-	100	98.630	ENSXETG00000025484	rab11b.1	99	98.630	Xenopus_tropicalis
ENSCPBG00000017056	-	100	97.248	ENSXCOG00000008042	-	100	97.248	Xiphophorus_couchianus
ENSCPBG00000017056	-	100	97.706	ENSXCOG00000009190	-	100	97.706	Xiphophorus_couchianus
ENSCPBG00000017056	-	100	97.248	ENSXMAG00000011926	rab11bb	100	97.248	Xiphophorus_maculatus
ENSCPBG00000017056	-	100	97.248	ENSXMAG00000024840	-	100	97.248	Xiphophorus_maculatus