EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000017728 (Gene tree)
Gene ID: 101935621
Gene Symbol: DDB1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 20697 bases
Position: chrKK083106.1:716561-737257
Accession: 2717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000024940	CPSF_A	PF03178.15	3.1e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000029381	DDB1-201	4092	XM_005289230	ENSCPBP00000024940	1140 (aa)	XP_005289287	UPI0003891731

Gene Model

Click here to download ENSCPBG00000017728's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03420	Nucleotide excision repair	KEGG
cpic04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000017728's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000017728	DDB1	100	97.632	ENSG00000167986	DDB1	100	98.788	Homo_sapiens
ENSCPBG00000017728	DDB1	98	90.844	ENSAPOG00000005036	ddb1	99	90.918	Acanthochromis_polyacanthus
ENSCPBG00000017728	DDB1	100	97.719	ENSAMEG00000016518	DDB1	100	97.719	Ailuropoda_melanoleuca
ENSCPBG00000017728	DDB1	86	91.224	ENSACIG00000020624	ddb1	99	91.224	Amphilophus_citrinellus
ENSCPBG00000017728	DDB1	100	90.877	ENSAOCG00000003066	ddb1	100	90.877	Amphiprion_ocellaris
ENSCPBG00000017728	DDB1	100	90.965	ENSAPEG00000000092	ddb1	100	90.965	Amphiprion_percula
ENSCPBG00000017728	DDB1	94	91.256	ENSATEG00000020571	ddb1	97	91.256	Anabas_testudineus
ENSCPBG00000017728	DDB1	98	97.333	ENSAPLG00000007174	DDB1	99	97.333	Anas_platyrhynchos
ENSCPBG00000017728	DDB1	100	97.807	ENSACAG00000017758	DDB1	100	97.807	Anolis_carolinensis
ENSCPBG00000017728	DDB1	100	97.632	ENSANAG00000021878	DDB1	100	97.632	Aotus_nancymaae
ENSCPBG00000017728	DDB1	100	91.228	ENSACLG00000012401	ddb1	100	91.228	Astatotilapia_calliptera
ENSCPBG00000017728	DDB1	100	97.719	ENSBTAG00000021569	DDB1	93	97.719	Bos_taurus
ENSCPBG00000017728	DDB1	100	36.869	WBGene00010890	ddb-1	100	36.784	Caenorhabditis_elegans
ENSCPBG00000017728	DDB1	100	97.632	ENSCJAG00000019319	DDB1	100	97.632	Callithrix_jacchus
ENSCPBG00000017728	DDB1	100	97.719	ENSCAFG00000016264	DDB1	100	97.719	Canis_familiaris
ENSCPBG00000017728	DDB1	94	97.581	ENSCAFG00020012722	DDB1	99	97.581	Canis_lupus_dingo
ENSCPBG00000017728	DDB1	100	97.719	ENSCHIG00000014969	DDB1	100	97.719	Capra_hircus
ENSCPBG00000017728	DDB1	100	97.368	ENSTSYG00000008027	DDB1	100	97.368	Carlito_syrichta
ENSCPBG00000017728	DDB1	98	97.140	ENSCAPG00000010786	DDB1	100	97.140	Cavia_aperea
ENSCPBG00000017728	DDB1	100	97.193	ENSCPOG00000009956	DDB1	100	97.193	Cavia_porcellus
ENSCPBG00000017728	DDB1	100	97.632	ENSCCAG00000035883	DDB1	100	97.632	Cebus_capucinus
ENSCPBG00000017728	DDB1	100	95.139	ENSCATG00000044495	DDB1	100	95.139	Cercocebus_atys
ENSCPBG00000017728	DDB1	100	97.368	ENSCLAG00000004126	DDB1	100	97.368	Chinchilla_lanigera
ENSCPBG00000017728	DDB1	100	97.632	ENSCSAG00000006392	DDB1	100	97.632	Chlorocebus_sabaeus
ENSCPBG00000017728	DDB1	88	91.477	ENSCHOG00000011377	DDB1	90	91.477	Choloepus_hoffmanni
ENSCPBG00000017728	DDB1	100	61.806	ENSCING00000007437	-	100	61.719	Ciona_intestinalis
ENSCPBG00000017728	DDB1	94	60.589	ENSCSAVG00000004783	-	100	60.589	Ciona_savignyi
ENSCPBG00000017728	DDB1	100	97.632	ENSCANG00000019948	DDB1	100	97.632	Colobus_angolensis_palliatus
ENSCPBG00000017728	DDB1	100	97.719	ENSCGRG00001016599	Ddb1	100	97.719	Cricetulus_griseus_chok1gshd
ENSCPBG00000017728	DDB1	100	97.719	ENSCGRG00000013427	Ddb1	100	97.719	Cricetulus_griseus_crigri
ENSCPBG00000017728	DDB1	93	90.575	ENSCSEG00000012499	ddb1	99	88.968	Cynoglossus_semilaevis
ENSCPBG00000017728	DDB1	94	90.960	ENSCVAG00000019531	ddb1	99	90.960	Cyprinodon_variegatus
ENSCPBG00000017728	DDB1	100	88.441	ENSDARG00000074431	ddb1	100	88.441	Danio_rerio
ENSCPBG00000017728	DDB1	94	97.488	ENSDNOG00000014884	DDB1	97	97.488	Dasypus_novemcinctus
ENSCPBG00000017728	DDB1	84	98.643	ENSDORG00000000127	Ddb1	100	98.643	Dipodomys_ordii
ENSCPBG00000017728	DDB1	100	60.873	FBgn0260962	pic	100	60.664	Drosophila_melanogaster
ENSCPBG00000017728	DDB1	71	98.819	ENSETEG00000001053	-	71	98.819	Echinops_telfairi
ENSCPBG00000017728	DDB1	78	84.364	ENSEBUG00000014593	ddb1	97	84.364	Eptatretus_burgeri
ENSCPBG00000017728	DDB1	100	97.544	ENSEASG00005008184	DDB1	100	97.544	Equus_asinus_asinus
ENSCPBG00000017728	DDB1	100	97.632	ENSECAG00000012136	DDB1	100	97.632	Equus_caballus
ENSCPBG00000017728	DDB1	85	95.286	ENSEEUG00000003194	DDB1	85	95.286	Erinaceus_europaeus
ENSCPBG00000017728	DDB1	100	90.877	ENSELUG00000023868	ddb1	100	90.877	Esox_lucius
ENSCPBG00000017728	DDB1	100	97.719	ENSFCAG00000029716	DDB1	100	97.719	Felis_catus
ENSCPBG00000017728	DDB1	100	97.638	ENSFALG00000011981	DDB1	100	97.638	Ficedula_albicollis
ENSCPBG00000017728	DDB1	100	97.456	ENSFDAG00000005128	DDB1	100	97.456	Fukomys_damarensis
ENSCPBG00000017728	DDB1	90	91.765	ENSFHEG00000022133	ddb1	98	91.765	Fundulus_heteroclitus
ENSCPBG00000017728	DDB1	79	94.649	ENSGMOG00000019386	ddb1	94	94.649	Gadus_morhua
ENSCPBG00000017728	DDB1	100	97.982	ENSGALG00000042333	DDB1	100	97.982	Gallus_gallus
ENSCPBG00000017728	DDB1	94	90.680	ENSGAFG00000013142	ddb1	99	90.680	Gambusia_affinis
ENSCPBG00000017728	DDB1	96	90.101	ENSGACG00000017182	ddb1	100	90.101	Gasterosteus_aculeatus
ENSCPBG00000017728	DDB1	95	99.908	ENSGAGG00000014124	DDB1	100	99.908	Gopherus_agassizii
ENSCPBG00000017728	DDB1	100	97.632	ENSGGOG00000004052	DDB1	100	97.632	Gorilla_gorilla
ENSCPBG00000017728	DDB1	100	91.228	ENSHBUG00000008873	ddb1	100	91.228	Haplochromis_burtoni
ENSCPBG00000017728	DDB1	100	97.544	ENSHGLG00000018430	DDB1	100	97.544	Heterocephalus_glaber_female
ENSCPBG00000017728	DDB1	100	96.491	ENSHGLG00100014475	DDB1	100	96.491	Heterocephalus_glaber_male
ENSCPBG00000017728	DDB1	94	90.428	ENSHCOG00000018670	ddb1	98	90.428	Hippocampus_comes
ENSCPBG00000017728	DDB1	100	90.439	ENSIPUG00000005612	DDB1	100	90.439	Ictalurus_punctatus
ENSCPBG00000017728	DDB1	100	97.632	ENSSTOG00000007552	DDB1	100	97.632	Ictidomys_tridecemlineatus
ENSCPBG00000017728	DDB1	100	97.632	ENSJJAG00000017769	Ddb1	100	97.632	Jaculus_jaculus
ENSCPBG00000017728	DDB1	94	90.774	ENSKMAG00000002315	ddb1	99	90.774	Kryptolebias_marmoratus
ENSCPBG00000017728	DDB1	85	90.881	ENSLBEG00000017065	ddb1	99	90.881	Labrus_bergylta
ENSCPBG00000017728	DDB1	100	93.520	ENSLACG00000017611	DDB1	100	93.520	Latimeria_chalumnae
ENSCPBG00000017728	DDB1	92	82.595	ENSLOCG00000000012	ddb1	100	82.595	Lepisosteus_oculatus
ENSCPBG00000017728	DDB1	100	97.632	ENSLAFG00000011513	DDB1	100	97.632	Loxodonta_africana
ENSCPBG00000017728	DDB1	100	97.632	ENSMFAG00000042035	DDB1	100	97.632	Macaca_fascicularis
ENSCPBG00000017728	DDB1	99	97.701	ENSMMUG00000002691	DDB1	99	97.701	Macaca_mulatta
ENSCPBG00000017728	DDB1	100	97.632	ENSMNEG00000031559	DDB1	100	97.632	Macaca_nemestrina
ENSCPBG00000017728	DDB1	100	97.632	ENSMLEG00000044136	DDB1	100	97.632	Mandrillus_leucophaeus
ENSCPBG00000017728	DDB1	100	91.316	ENSMAMG00000014372	ddb1	100	91.316	Mastacembelus_armatus
ENSCPBG00000017728	DDB1	100	91.140	ENSMZEG00005013835	ddb1	100	91.140	Maylandia_zebra
ENSCPBG00000017728	DDB1	94	97.579	ENSMGAG00000004990	DDB1	100	97.579	Meleagris_gallopavo
ENSCPBG00000017728	DDB1	100	97.719	ENSMAUG00000012926	Ddb1	100	97.719	Mesocricetus_auratus
ENSCPBG00000017728	DDB1	100	97.632	ENSMICG00000013703	DDB1	100	97.632	Microcebus_murinus
ENSCPBG00000017728	DDB1	100	97.456	ENSMOCG00000020499	Ddb1	100	97.456	Microtus_ochrogaster
ENSCPBG00000017728	DDB1	86	91.020	ENSMMOG00000001758	ddb1	99	91.020	Mola_mola
ENSCPBG00000017728	DDB1	100	88.322	ENSMODG00000020353	DDB1	100	88.322	Monodelphis_domestica
ENSCPBG00000017728	DDB1	100	91.228	ENSMALG00000014071	ddb1	100	91.228	Monopterus_albus
ENSCPBG00000017728	DDB1	100	97.719	MGP_CAROLIEiJ_G0022695	Ddb1	100	97.719	Mus_caroli
ENSCPBG00000017728	DDB1	100	97.632	ENSMUSG00000024740	Ddb1	100	97.632	Mus_musculus
ENSCPBG00000017728	DDB1	100	97.719	MGP_PahariEiJ_G0014189	Ddb1	100	97.719	Mus_pahari
ENSCPBG00000017728	DDB1	100	97.719	MGP_SPRETEiJ_G0023609	Ddb1	100	97.719	Mus_spretus
ENSCPBG00000017728	DDB1	100	94.474	ENSMPUG00000014200	DDB1	100	94.474	Mustela_putorius_furo
ENSCPBG00000017728	DDB1	100	97.632	ENSMLUG00000013232	DDB1	100	97.632	Myotis_lucifugus
ENSCPBG00000017728	DDB1	100	97.456	ENSNGAG00000009384	Ddb1	100	97.456	Nannospalax_galili
ENSCPBG00000017728	DDB1	100	91.316	ENSNBRG00000019581	ddb1	100	91.316	Neolamprologus_brichardi
ENSCPBG00000017728	DDB1	100	94.531	ENSNLEG00000002022	DDB1	100	94.531	Nomascus_leucogenys
ENSCPBG00000017728	DDB1	90	97.887	ENSMEUG00000001099	DDB1	92	97.887	Notamacropus_eugenii
ENSCPBG00000017728	DDB1	90	89.234	ENSOPRG00000008254	DDB1	90	89.234	Ochotona_princeps
ENSCPBG00000017728	DDB1	100	97.105	ENSODEG00000002419	DDB1	100	97.105	Octodon_degus
ENSCPBG00000017728	DDB1	100	91.228	ENSONIG00000005804	ddb1	100	91.228	Oreochromis_niloticus
ENSCPBG00000017728	DDB1	91	98.062	ENSOANG00000004897	DDB1	100	98.062	Ornithorhynchus_anatinus
ENSCPBG00000017728	DDB1	100	97.632	ENSOCUG00000001667	DDB1	100	97.632	Oryctolagus_cuniculus
ENSCPBG00000017728	DDB1	96	89.551	ENSORLG00000001399	ddb1	98	90.778	Oryzias_latipes
ENSCPBG00000017728	DDB1	96	89.459	ENSORLG00020001277	ddb1	97	89.459	Oryzias_latipes_hni
ENSCPBG00000017728	DDB1	94	90.605	ENSORLG00015002080	ddb1	99	90.605	Oryzias_latipes_hsok
ENSCPBG00000017728	DDB1	96	89.426	ENSOMEG00000006181	ddb1	99	89.426	Oryzias_melastigma
ENSCPBG00000017728	DDB1	100	97.719	ENSOGAG00000016103	DDB1	100	97.719	Otolemur_garnettii
ENSCPBG00000017728	DDB1	99	97.863	ENSOARG00000011716	DDB1	98	97.863	Ovis_aries
ENSCPBG00000017728	DDB1	100	97.632	ENSPPAG00000035343	DDB1	100	97.632	Pan_paniscus
ENSCPBG00000017728	DDB1	100	97.719	ENSPPRG00000013300	DDB1	100	97.719	Panthera_pardus
ENSCPBG00000017728	DDB1	98	97.676	ENSPTIG00000006909	DDB1	98	97.676	Panthera_tigris_altaica
ENSCPBG00000017728	DDB1	100	97.632	ENSPTRG00000003737	DDB1	100	97.632	Pan_troglodytes
ENSCPBG00000017728	DDB1	100	97.632	ENSPANG00000000242	DDB1	100	97.632	Papio_anubis
ENSCPBG00000017728	DDB1	94	90.960	ENSPKIG00000019213	ddb1	94	90.960	Paramormyrops_kingsleyae
ENSCPBG00000017728	DDB1	98	98.843	ENSPSIG00000013275	DDB1	100	98.843	Pelodiscus_sinensis
ENSCPBG00000017728	DDB1	86	90.918	ENSPMGG00000021179	ddb1	99	90.918	Periophthalmus_magnuspinnatus
ENSCPBG00000017728	DDB1	100	97.719	ENSPEMG00000012241	Ddb1	100	97.719	Peromyscus_maniculatus_bairdii
ENSCPBG00000017728	DDB1	89	86.248	ENSPMAG00000008479	ddb1	100	86.248	Petromyzon_marinus
ENSCPBG00000017728	DDB1	100	98.246	ENSPCIG00000002643	DDB1	100	98.246	Phascolarctos_cinereus
ENSCPBG00000017728	DDB1	100	90.622	ENSPFOG00000002768	ddb1	100	90.622	Poecilia_formosa
ENSCPBG00000017728	DDB1	100	90.439	ENSPLAG00000017227	ddb1	100	90.439	Poecilia_latipinna
ENSCPBG00000017728	DDB1	100	90.439	ENSPMEG00000011398	ddb1	100	90.439	Poecilia_mexicana
ENSCPBG00000017728	DDB1	94	90.791	ENSPREG00000004440	ddb1	98	90.791	Poecilia_reticulata
ENSCPBG00000017728	DDB1	100	92.845	ENSPPYG00000003193	DDB1	100	92.845	Pongo_abelii
ENSCPBG00000017728	DDB1	85	97.313	ENSPCAG00000011040	DDB1	85	97.313	Procavia_capensis
ENSCPBG00000017728	DDB1	100	96.147	ENSPCOG00000015176	DDB1	100	96.147	Propithecus_coquereli
ENSCPBG00000017728	DDB1	100	97.544	ENSPVAG00000003847	DDB1	100	97.544	Pteropus_vampyrus
ENSCPBG00000017728	DDB1	94	90.960	ENSPNAG00000006635	ddb1	97	90.960	Pygocentrus_nattereri
ENSCPBG00000017728	DDB1	100	97.632	ENSRNOG00000020715	Ddb1	100	97.632	Rattus_norvegicus
ENSCPBG00000017728	DDB1	100	97.632	ENSRBIG00000033611	DDB1	100	97.632	Rhinopithecus_bieti
ENSCPBG00000017728	DDB1	100	97.632	ENSRROG00000041407	DDB1	100	97.632	Rhinopithecus_roxellana
ENSCPBG00000017728	DDB1	100	97.719	ENSSBOG00000019775	DDB1	100	97.719	Saimiri_boliviensis_boliviensis
ENSCPBG00000017728	DDB1	94	96.168	ENSSHAG00000011600	DDB1	100	96.168	Sarcophilus_harrisii
ENSCPBG00000017728	DDB1	94	91.171	ENSSFOG00015011151	ddb1	97	91.171	Scleropages_formosus
ENSCPBG00000017728	DDB1	100	90.789	ENSSMAG00000009495	ddb1	100	90.789	Scophthalmus_maximus
ENSCPBG00000017728	DDB1	100	91.140	ENSSDUG00000004642	ddb1	100	91.140	Seriola_dumerili
ENSCPBG00000017728	DDB1	100	91.140	ENSSLDG00000015804	ddb1	100	91.140	Seriola_lalandi_dorsalis
ENSCPBG00000017728	DDB1	70	99.091	ENSSARG00000003290	-	72	99.091	Sorex_araneus
ENSCPBG00000017728	DDB1	100	98.947	ENSSPUG00000019338	DDB1	100	98.947	Sphenodon_punctatus
ENSCPBG00000017728	DDB1	94	91.070	ENSSPAG00000009888	ddb1	99	91.070	Stegastes_partitus
ENSCPBG00000017728	DDB1	100	96.754	ENSSSCG00000013094	DDB1	100	96.754	Sus_scrofa
ENSCPBG00000017728	DDB1	100	97.807	ENSTGUG00000006414	DDB1	100	97.807	Taeniopygia_guttata
ENSCPBG00000017728	DDB1	94	89.748	ENSTRUG00000016682	ddb1	98	89.748	Takifugu_rubripes
ENSCPBG00000017728	DDB1	88	85.030	ENSTNIG00000009565	ddb1	99	85.030	Tetraodon_nigroviridis
ENSCPBG00000017728	DDB1	92	92.820	ENSTTRG00000011055	DDB1	94	92.820	Tursiops_truncatus
ENSCPBG00000017728	DDB1	94	97.581	ENSUAMG00000017793	DDB1	93	97.581	Ursus_americanus
ENSCPBG00000017728	DDB1	94	97.581	ENSUMAG00000011788	DDB1	98	97.581	Ursus_maritimus
ENSCPBG00000017728	DDB1	90	97.059	ENSVPAG00000007963	DDB1	92	97.059	Vicugna_pacos
ENSCPBG00000017728	DDB1	100	97.632	ENSVVUG00000004987	DDB1	100	97.632	Vulpes_vulpes
ENSCPBG00000017728	DDB1	100	92.657	ENSXETG00000008820	ddb1	100	92.657	Xenopus_tropicalis
ENSCPBG00000017728	DDB1	86	90.714	ENSXCOG00000013956	ddb1	99	90.714	Xiphophorus_couchianus
ENSCPBG00000017728	DDB1	94	90.680	ENSXMAG00000000022	ddb1	99	90.680	Xiphophorus_maculatus