EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000017755 (Gene tree)
Gene ID: 101951430
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 8812 bases
Position: chrKK082922.1:425656-434467
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000024977	RRM_5	PF13893.6	4.1e-08	1	1
ENSCPBP00000024977	RRM_1	PF00076.22	1.7e-91	1	4
ENSCPBP00000024977	RRM_1	PF00076.22	1.7e-91	2	4
ENSCPBP00000024977	RRM_1	PF00076.22	1.7e-91	3	4
ENSCPBP00000024977	RRM_1	PF00076.22	1.7e-91	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000029422	-	1338	-	ENSCPBP00000024977	445 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000017755's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG
cpic03015	mRNA surveillance pathway	KEGG
cpic03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000017755's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000017755	-	69	34.247	ENSCPBG00000008870	CELF3	78	32.258
ENSCPBG00000017755	-	82	30.909	ENSCPBG00000011990	RBM19	61	30.247
ENSCPBG00000017755	-	73	82.836	ENSCPBG00000007810	-	82	82.836
ENSCPBG00000017755	-	50	39.189	ENSCPBG00000021863	-	56	39.189
ENSCPBG00000017755	-	87	33.735	ENSCPBG00000007841	ELAVL2	92	33.735
ENSCPBG00000017755	-	73	39.130	ENSCPBG00000022914	CELF1	67	39.130
ENSCPBG00000017755	-	73	37.681	ENSCPBG00000027840	CELF2	63	37.681
ENSCPBG00000017755	-	81	30.120	ENSCPBG00000003611	TIA1	74	30.120
ENSCPBG00000017755	-	99	79.730	ENSCPBG00000001038	PABPC4	70	79.730
ENSCPBG00000017755	-	71	40.580	ENSCPBG00000010903	CELF5	63	40.580
ENSCPBG00000017755	-	65	41.791	ENSCPBG00000010904	RBFOX3	53	37.179
ENSCPBG00000017755	-	99	78.829	ENSCPBG00000005782	PABPC1	70	78.829
ENSCPBG00000017755	-	87	31.092	ENSCPBG00000023982	ELAVL3	97	31.092
ENSCPBG00000017755	-	81	31.818	ENSCPBG00000001103	TIAL1	80	31.818
ENSCPBG00000017755	-	82	35.407	ENSCPBG00000008041	SF3B4	50	35.023

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000017755	-	99	81.757	ENSG00000101104	PABPC1L	98	82.407	Homo_sapiens
ENSCPBG00000017755	-	99	77.376	ENSAPOG00000010842	pabpc1l	72	77.376	Acanthochromis_polyacanthus
ENSCPBG00000017755	-	93	86.199	ENSAMEG00000004099	PABPC1L	69	82.460	Ailuropoda_melanoleuca
ENSCPBG00000017755	-	99	79.186	ENSACIG00000021004	-	82	77.014	Amphilophus_citrinellus
ENSCPBG00000017755	-	99	77.149	ENSAOCG00000006167	-	70	77.149	Amphiprion_ocellaris
ENSCPBG00000017755	-	99	77.149	ENSAPEG00000010558	-	98	82.629	Amphiprion_percula
ENSCPBG00000017755	-	99	79.412	ENSATEG00000007428	pabpc1l	72	79.412	Anabas_testudineus
ENSCPBG00000017755	-	98	94.700	ENSAPLG00000008415	PABPC1L	70	94.318	Anas_platyrhynchos
ENSCPBG00000017755	-	99	90.541	ENSACAG00000011841	PABPC1L	70	90.541	Anolis_carolinensis
ENSCPBG00000017755	-	99	80.856	ENSANAG00000026826	PABPC1L	72	80.856	Aotus_nancymaae
ENSCPBG00000017755	-	99	79.864	ENSACLG00000024791	pabpc1l	70	79.864	Astatotilapia_calliptera
ENSCPBG00000017755	-	99	83.032	ENSAMXG00000013552	pabpc1l	70	83.032	Astyanax_mexicanus
ENSCPBG00000017755	-	87	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSCPBG00000017755	-	90	68.929	ENSBTAG00000016849	PABPC1L	86	68.929	Bos_taurus
ENSCPBG00000017755	-	82	80.460	ENSCJAG00000038506	-	100	80.460	Callithrix_jacchus
ENSCPBG00000017755	-	99	81.306	ENSCJAG00000017628	PABPC1L	72	81.306	Callithrix_jacchus
ENSCPBG00000017755	-	99	81.532	ENSCAFG00000009573	PABPC1L	68	81.532	Canis_familiaris
ENSCPBG00000017755	-	99	82.805	ENSCAFG00020013828	PABPC1L	72	82.805	Canis_lupus_dingo
ENSCPBG00000017755	-	99	83.937	ENSCHIG00000025759	PABPC1L	68	83.937	Capra_hircus
ENSCPBG00000017755	-	99	81.982	ENSTSYG00000006645	PABPC1L	72	81.982	Carlito_syrichta
ENSCPBG00000017755	-	97	75.000	ENSCAPG00000014519	PABPC1L	68	75.000	Cavia_aperea
ENSCPBG00000017755	-	99	78.555	ENSCPOG00000013633	PABPC1L	72	78.555	Cavia_porcellus
ENSCPBG00000017755	-	99	81.081	ENSCCAG00000023338	PABPC1L	72	81.081	Cebus_capucinus
ENSCPBG00000017755	-	99	81.982	ENSCATG00000034065	PABPC1L	72	81.982	Cercocebus_atys
ENSCPBG00000017755	-	99	78.733	ENSCLAG00000005298	PABPC1L	72	78.733	Chinchilla_lanigera
ENSCPBG00000017755	-	99	81.757	ENSCSAG00000014242	PABPC1L	72	81.757	Chlorocebus_sabaeus
ENSCPBG00000017755	-	96	56.949	ENSCING00000002796	-	58	56.949	Ciona_intestinalis
ENSCPBG00000017755	-	99	65.533	ENSCSAVG00000004246	-	75	65.438	Ciona_savignyi
ENSCPBG00000017755	-	99	62.584	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSCPBG00000017755	-	99	81.982	ENSCANG00000037530	PABPC1L	73	81.982	Colobus_angolensis_palliatus
ENSCPBG00000017755	-	99	74.434	ENSCGRG00001021938	Pabpc1l	72	74.434	Cricetulus_griseus_chok1gshd
ENSCPBG00000017755	-	99	74.434	ENSCGRG00000007946	Pabpc1l	72	74.434	Cricetulus_griseus_crigri
ENSCPBG00000017755	-	99	76.538	ENSCSEG00000021295	pabpc1l	77	76.538	Cynoglossus_semilaevis
ENSCPBG00000017755	-	100	79.551	ENSCVAG00000015943	-	86	90.076	Cyprinodon_variegatus
ENSCPBG00000017755	-	99	79.864	ENSDARG00000002597	pabpc1l	88	90.769	Danio_rerio
ENSCPBG00000017755	-	99	84.842	ENSDNOG00000048450	PABPC1L	72	84.842	Dasypus_novemcinctus
ENSCPBG00000017755	-	99	79.412	ENSDORG00000001067	Pabpc1l	72	79.412	Dipodomys_ordii
ENSCPBG00000017755	-	71	85.093	ENSEASG00005023407	-	65	85.093	Equus_asinus_asinus
ENSCPBG00000017755	-	87	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSCPBG00000017755	-	92	78.788	ENSECAG00000040139	-	82	78.788	Equus_caballus
ENSCPBG00000017755	-	99	81.222	ENSEEUG00000005978	PABPC1L	72	81.222	Erinaceus_europaeus
ENSCPBG00000017755	-	99	81.716	ENSELUG00000001811	pabpc1l	78	81.651	Esox_lucius
ENSCPBG00000017755	-	99	83.484	ENSFCAG00000011692	PABPC1L	72	83.484	Felis_catus
ENSCPBG00000017755	-	99	93.905	ENSFALG00000005372	PABPC1L	75	93.905	Ficedula_albicollis
ENSCPBG00000017755	-	99	79.233	ENSFDAG00000008291	PABPC1L	75	79.233	Fukomys_damarensis
ENSCPBG00000017755	-	99	80.090	ENSFHEG00000003398	pabpc1l	77	75.159	Fundulus_heteroclitus
ENSCPBG00000017755	-	99	80.499	ENSGMOG00000004437	pabpc1l	71	80.499	Gadus_morhua
ENSCPBG00000017755	-	98	94.019	ENSGALG00000004123	PABPC1L	98	94.915	Gallus_gallus
ENSCPBG00000017755	-	99	74.630	ENSGAFG00000021057	pabpc1l	72	74.630	Gambusia_affinis
ENSCPBG00000017755	-	99	80.045	ENSGACG00000002792	pabpc1l	71	80.045	Gasterosteus_aculeatus
ENSCPBG00000017755	-	99	98.874	ENSGAGG00000000589	PABPC1L	80	93.694	Gopherus_agassizii
ENSCPBG00000017755	-	99	81.757	ENSGGOG00000004584	PABPC1L	72	81.757	Gorilla_gorilla
ENSCPBG00000017755	-	99	79.864	ENSHBUG00000006134	pabpc1l	76	79.215	Haplochromis_burtoni
ENSCPBG00000017755	-	99	79.638	ENSHGLG00000008434	PABPC1L	72	79.638	Heterocephalus_glaber_female
ENSCPBG00000017755	-	99	79.638	ENSHGLG00100012151	PABPC1L	72	79.638	Heterocephalus_glaber_male
ENSCPBG00000017755	-	81	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSCPBG00000017755	-	98	78.125	ENSHCOG00000009270	pabpc1l	73	80.529	Hippocampus_comes
ENSCPBG00000017755	-	99	84.163	ENSIPUG00000012602	pabpc1l	76	84.163	Ictalurus_punctatus
ENSCPBG00000017755	-	60	60.769	ENSIPUG00000005537	-	100	60.769	Ictalurus_punctatus
ENSCPBG00000017755	-	82	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSCPBG00000017755	-	82	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSCPBG00000017755	-	99	81.448	ENSSTOG00000003739	PABPC1L	72	81.448	Ictidomys_tridecemlineatus
ENSCPBG00000017755	-	99	61.497	ENSJJAG00000022406	Pabpc1l	67	57.273	Jaculus_jaculus
ENSCPBG00000017755	-	99	79.638	ENSKMAG00000016847	pabpc1l	78	79.638	Kryptolebias_marmoratus
ENSCPBG00000017755	-	99	78.912	ENSLBEG00000010084	pabpc1l	72	78.851	Labrus_bergylta
ENSCPBG00000017755	-	99	86.486	ENSLACG00000005762	PABPC1L	81	86.486	Latimeria_chalumnae
ENSCPBG00000017755	-	99	85.520	ENSLOCG00000007519	pabpc1l	69	85.520	Lepisosteus_oculatus
ENSCPBG00000017755	-	99	83.258	ENSLAFG00000003553	PABPC1L	71	83.258	Loxodonta_africana
ENSCPBG00000017755	-	99	81.982	ENSMFAG00000040365	PABPC1L	72	81.982	Macaca_fascicularis
ENSCPBG00000017755	-	99	81.982	ENSMNEG00000032298	PABPC1L	72	81.982	Macaca_nemestrina
ENSCPBG00000017755	-	99	81.982	ENSMLEG00000043139	PABPC1L	72	81.982	Mandrillus_leucophaeus
ENSCPBG00000017755	-	99	78.231	ENSMAMG00000011854	pabpc1l	71	78.231	Mastacembelus_armatus
ENSCPBG00000017755	-	99	79.864	ENSMZEG00005023713	pabpc1l	70	79.864	Maylandia_zebra
ENSCPBG00000017755	-	99	93.919	ENSMGAG00000003674	PABPC1L	71	93.919	Meleagris_gallopavo
ENSCPBG00000017755	-	98	74.886	ENSMOCG00000013186	Pabpc1l	71	74.886	Microtus_ochrogaster
ENSCPBG00000017755	-	99	79.365	ENSMMOG00000020574	-	90	90.769	Mola_mola
ENSCPBG00000017755	-	99	85.682	ENSMODG00000016198	PABPC1L	76	85.682	Monodelphis_domestica
ENSCPBG00000017755	-	99	78.231	ENSMALG00000021622	pabpc1l	73	78.231	Monopterus_albus
ENSCPBG00000017755	-	99	74.492	MGP_CAROLIEiJ_G0024627	Pabpc1l	72	74.492	Mus_caroli
ENSCPBG00000017755	-	99	74.492	ENSMUSG00000054582	Pabpc1l	72	74.492	Mus_musculus
ENSCPBG00000017755	-	99	74.718	MGP_PahariEiJ_G0026071	Pabpc1l	72	74.718	Mus_pahari
ENSCPBG00000017755	-	99	74.492	MGP_SPRETEiJ_G0025549	Pabpc1l	72	74.492	Mus_spretus
ENSCPBG00000017755	-	99	83.559	ENSMPUG00000017646	PABPC1L	71	83.559	Mustela_putorius_furo
ENSCPBG00000017755	-	99	79.372	ENSMLUG00000006324	PABPC1L	70	79.372	Myotis_lucifugus
ENSCPBG00000017755	-	99	75.113	ENSNGAG00000010458	Pabpc1l	72	75.113	Nannospalax_galili
ENSCPBG00000017755	-	99	79.864	ENSNBRG00000016633	pabpc1l	82	78.657	Neolamprologus_brichardi
ENSCPBG00000017755	-	98	83.524	ENSMEUG00000007905	-	71	83.524	Notamacropus_eugenii
ENSCPBG00000017755	-	99	81.222	ENSOPRG00000011846	PABPC1L	72	81.222	Ochotona_princeps
ENSCPBG00000017755	-	80	78.750	ENSODEG00000002920	-	97	78.750	Octodon_degus
ENSCPBG00000017755	-	93	80.435	ENSODEG00000015482	PABPC1L	76	80.435	Octodon_degus
ENSCPBG00000017755	-	99	79.864	ENSONIG00000017314	pabpc1l	70	79.864	Oreochromis_niloticus
ENSCPBG00000017755	-	99	75.676	ENSOANG00000015793	-	79	75.676	Ornithorhynchus_anatinus
ENSCPBG00000017755	-	99	78.876	ENSOCUG00000003005	PABPC1L	68	78.876	Oryctolagus_cuniculus
ENSCPBG00000017755	-	99	79.412	ENSORLG00000010322	pabpc1l	83	78.177	Oryzias_latipes
ENSCPBG00000017755	-	99	79.412	ENSORLG00020021193	pabpc1l	83	78.177	Oryzias_latipes_hni
ENSCPBG00000017755	-	99	79.412	ENSORLG00015017018	pabpc1l	83	78.177	Oryzias_latipes_hsok
ENSCPBG00000017755	-	99	74.947	ENSOMEG00000010789	pabpc1l	71	74.947	Oryzias_melastigma
ENSCPBG00000017755	-	99	81.406	ENSOGAG00000032999	PABPC1L	71	81.406	Otolemur_garnettii
ENSCPBG00000017755	-	99	83.408	ENSOARG00000004578	PABPC1L	72	83.408	Ovis_aries
ENSCPBG00000017755	-	99	81.982	ENSPPAG00000039677	PABPC1L	72	81.982	Pan_paniscus
ENSCPBG00000017755	-	87	74.383	ENSPPRG00000019327	-	98	74.383	Panthera_pardus
ENSCPBG00000017755	-	98	83.257	ENSPTIG00000006524	PABPC1L	72	83.257	Panthera_tigris_altaica
ENSCPBG00000017755	-	87	82.716	ENSPTRG00000013531	PABPC1L	98	82.716	Pan_troglodytes
ENSCPBG00000017755	-	99	81.982	ENSPANG00000018788	PABPC1L	72	81.982	Papio_anubis
ENSCPBG00000017755	-	73	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSCPBG00000017755	-	99	82.353	ENSPKIG00000007322	pabpc1l	71	82.353	Paramormyrops_kingsleyae
ENSCPBG00000017755	-	94	97.122	ENSPSIG00000013289	PABPC1L	99	97.122	Pelodiscus_sinensis
ENSCPBG00000017755	-	87	88.636	ENSPMGG00000023117	pabpc1l	97	83.721	Periophthalmus_magnuspinnatus
ENSCPBG00000017755	-	98	70.918	ENSPMGG00000023121	-	90	70.918	Periophthalmus_magnuspinnatus
ENSCPBG00000017755	-	99	74.434	ENSPEMG00000020671	Pabpc1l	72	74.434	Peromyscus_maniculatus_bairdii
ENSCPBG00000017755	-	99	80.045	ENSPFOG00000013241	pabpc1l	71	80.045	Poecilia_formosa
ENSCPBG00000017755	-	99	80.045	ENSPLAG00000017490	-	78	80.045	Poecilia_latipinna
ENSCPBG00000017755	-	73	91.538	ENSPLAG00000023686	-	92	91.538	Poecilia_latipinna
ENSCPBG00000017755	-	73	91.538	ENSPMEG00000009185	-	88	91.538	Poecilia_mexicana
ENSCPBG00000017755	-	99	80.045	ENSPMEG00000007677	pabpc1l	71	80.045	Poecilia_mexicana
ENSCPBG00000017755	-	93	81.598	ENSPREG00000015886	pabpc1l	99	81.598	Poecilia_reticulata
ENSCPBG00000017755	-	99	81.757	ENSPPYG00000011042	PABPC1L	72	81.757	Pongo_abelii
ENSCPBG00000017755	-	85	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSCPBG00000017755	-	99	81.716	ENSPCOG00000020630	PABPC1L	73	81.716	Propithecus_coquereli
ENSCPBG00000017755	-	99	81.179	ENSPVAG00000012663	PABPC1L	72	81.179	Pteropus_vampyrus
ENSCPBG00000017755	-	99	79.864	ENSPNYG00000004101	pabpc1l	82	78.657	Pundamilia_nyererei
ENSCPBG00000017755	-	99	74.208	ENSPNAG00000021248	pabpc1l	68	74.208	Pygocentrus_nattereri
ENSCPBG00000017755	-	99	74.208	ENSRNOG00000012750	Pabpc1l	72	74.208	Rattus_norvegicus
ENSCPBG00000017755	-	99	81.757	ENSRBIG00000035381	PABPC1L	72	81.757	Rhinopithecus_bieti
ENSCPBG00000017755	-	99	81.532	ENSRROG00000044498	PABPC1L	72	81.532	Rhinopithecus_roxellana
ENSCPBG00000017755	-	99	81.081	ENSSBOG00000009532	-	72	81.081	Saimiri_boliviensis_boliviensis
ENSCPBG00000017755	-	97	79.553	ENSSHAG00000011446	PABPC1L	64	79.553	Sarcophilus_harrisii
ENSCPBG00000017755	-	100	84.494	ENSSFOG00015017304	pabpc1l	71	84.494	Scleropages_formosus
ENSCPBG00000017755	-	100	79.326	ENSSMAG00000010516	pabpc1l	98	87.500	Scophthalmus_maximus
ENSCPBG00000017755	-	100	79.551	ENSSDUG00000014743	pabpc1l	72	79.551	Seriola_dumerili
ENSCPBG00000017755	-	93	87.560	ENSSLDG00000006981	pabpc1l	98	87.560	Seriola_lalandi_dorsalis
ENSCPBG00000017755	-	99	94.570	ENSSPUG00000004233	PABPC1L	70	94.570	Sphenodon_punctatus
ENSCPBG00000017755	-	100	76.629	ENSSPAG00000017137	pabpc1l	79	76.629	Stegastes_partitus
ENSCPBG00000017755	-	99	83.258	ENSSSCG00000007382	PABPC1L	72	83.258	Sus_scrofa
ENSCPBG00000017755	-	99	91.667	ENSTGUG00000005114	PABPC1L	72	91.667	Taeniopygia_guttata
ENSCPBG00000017755	-	99	78.685	ENSTRUG00000011085	pabpc1l	71	78.685	Takifugu_rubripes
ENSCPBG00000017755	-	99	76.471	ENSTNIG00000017903	pabpc1l	70	76.471	Tetraodon_nigroviridis
ENSCPBG00000017755	-	99	80.995	ENSTTRG00000007618	PABPC1L	74	80.995	Tursiops_truncatus
ENSCPBG00000017755	-	99	83.673	ENSUAMG00000017682	PABPC1L	75	83.673	Ursus_americanus
ENSCPBG00000017755	-	96	79.576	ENSUMAG00000025436	PABPC1L	94	79.576	Ursus_maritimus
ENSCPBG00000017755	-	100	82.921	ENSVVUG00000018939	PABPC1L	74	82.921	Vulpes_vulpes
ENSCPBG00000017755	-	99	83.747	ENSXETG00000022831	pabpc1l	70	83.747	Xenopus_tropicalis
ENSCPBG00000017755	-	99	80.045	ENSXCOG00000005459	pabpc1l	99	86.525	Xiphophorus_couchianus
ENSCPBG00000017755	-	99	80.045	ENSXMAG00000017135	pabpc1l	78	80.045	Xiphophorus_maculatus