EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000018094 (Gene tree)
Gene ID: 101943763
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 463349 bases
Position: chrKK083108.1:623880-1087228
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000025447	TUDOR	PF00567.24	2.5e-27	1	1
ENSCPBP00000025447	SNase	PF00565.17	9.5e-70	1	4
ENSCPBP00000025447	SNase	PF00565.17	9.5e-70	2	4
ENSCPBP00000025447	SNase	PF00565.17	9.5e-70	3	4
ENSCPBP00000025447	SNase	PF00565.17	9.5e-70	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000029975	SND1-201	3209	XM_008174151	ENSCPBP00000025447	908 (aa)	XP_008172373	UPI00046BF852

Gene Model

Click here to download ENSCPBG00000018094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000018094's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000018094	SND1	98	93.049	ENSG00000197157	SND1	100	92.088	Homo_sapiens
ENSCPBG00000018094	SND1	100	83.974	ENSAPOG00000017599	snd1	100	83.974	Acanthochromis_polyacanthus
ENSCPBG00000018094	SND1	100	91.996	ENSAMEG00000004664	SND1	94	91.996	Ailuropoda_melanoleuca
ENSCPBG00000018094	SND1	98	82.307	ENSACIG00000003551	snd1	100	81.319	Amphilophus_citrinellus
ENSCPBG00000018094	SND1	100	83.974	ENSAOCG00000014166	snd1	100	83.974	Amphiprion_ocellaris
ENSCPBG00000018094	SND1	100	83.974	ENSAPEG00000007067	snd1	100	83.974	Amphiprion_percula
ENSCPBG00000018094	SND1	98	83.333	ENSATEG00000018475	snd1	89	83.333	Anabas_testudineus
ENSCPBG00000018094	SND1	98	92.937	ENSANAG00000034463	SND1	99	92.986	Aotus_nancymaae
ENSCPBG00000018094	SND1	100	83.644	ENSACLG00000022897	snd1	100	83.644	Astatotilapia_calliptera
ENSCPBG00000018094	SND1	100	84.136	ENSAMXG00000016318	snd1	100	84.136	Astyanax_mexicanus
ENSCPBG00000018094	SND1	98	92.825	ENSBTAG00000010692	SND1	100	91.868	Bos_taurus
ENSCPBG00000018094	SND1	99	46.355	WBGene00006626	tsn-1	99	46.238	Caenorhabditis_elegans
ENSCPBG00000018094	SND1	98	93.049	ENSCJAG00000017668	SND1	99	93.100	Callithrix_jacchus
ENSCPBG00000018094	SND1	100	92.198	ENSCAFG00000001700	SND1	100	92.198	Canis_familiaris
ENSCPBG00000018094	SND1	100	92.198	ENSCAFG00020021639	SND1	100	92.198	Canis_lupus_dingo
ENSCPBG00000018094	SND1	98	93.049	ENSCHIG00000023390	SND1	100	92.088	Capra_hircus
ENSCPBG00000018094	SND1	73	95.070	ENSTSYG00000004979	SND1	96	95.070	Carlito_syrichta
ENSCPBG00000018094	SND1	99	80.022	ENSCAPG00000010677	SND1	98	79.689	Cavia_aperea
ENSCPBG00000018094	SND1	98	92.489	ENSCPOG00000006251	SND1	100	91.538	Cavia_porcellus
ENSCPBG00000018094	SND1	100	91.079	ENSCCAG00000036847	SND1	100	92.088	Cebus_capucinus
ENSCPBG00000018094	SND1	98	93.386	ENSCATG00000035214	SND1	99	93.439	Cercocebus_atys
ENSCPBG00000018094	SND1	99	92.531	ENSCLAG00000011796	SND1	100	91.868	Chinchilla_lanigera
ENSCPBG00000018094	SND1	98	93.386	ENSCSAG00000010182	SND1	100	92.418	Chlorocebus_sabaeus
ENSCPBG00000018094	SND1	78	78.431	ENSCHOG00000002218	SND1	86	78.218	Choloepus_hoffmanni
ENSCPBG00000018094	SND1	98	57.032	ENSCING00000000524	-	99	56.312	Ciona_intestinalis
ENSCPBG00000018094	SND1	100	57.268	ENSCSAVG00000008807	-	99	56.831	Ciona_savignyi
ENSCPBG00000018094	SND1	98	93.386	ENSCANG00000035119	SND1	100	92.418	Colobus_angolensis_palliatus
ENSCPBG00000018094	SND1	98	91.480	ENSCGRG00001022514	Snd1	100	90.549	Cricetulus_griseus_chok1gshd
ENSCPBG00000018094	SND1	97	91.516	ENSCGRG00000012277	Snd1	99	91.516	Cricetulus_griseus_crigri
ENSCPBG00000018094	SND1	100	83.425	ENSCSEG00000008661	snd1	100	83.425	Cynoglossus_semilaevis
ENSCPBG00000018094	SND1	100	84.303	ENSCVAG00000010316	snd1	100	84.303	Cyprinodon_variegatus
ENSCPBG00000018094	SND1	100	84.337	ENSDARG00000006766	snd1	99	87.193	Danio_rerio
ENSCPBG00000018094	SND1	97	90.530	ENSDNOG00000006795	SND1	100	90.530	Dasypus_novemcinctus
ENSCPBG00000018094	SND1	98	92.601	ENSDORG00000000336	Snd1	100	91.648	Dipodomys_ordii
ENSCPBG00000018094	SND1	98	50.379	FBgn0035121	Tudor-SN	99	49.839	Drosophila_melanogaster
ENSCPBG00000018094	SND1	90	91.667	ENSETEG00000000375	SND1	92	91.667	Echinops_telfairi
ENSCPBG00000018094	SND1	57	68.649	ENSEBUG00000014201	-	84	78.689	Eptatretus_burgeri
ENSCPBG00000018094	SND1	98	91.630	ENSEASG00005008513	SND1	100	90.713	Equus_asinus_asinus
ENSCPBG00000018094	SND1	98	93.161	ENSECAG00000011451	SND1	100	91.978	Equus_caballus
ENSCPBG00000018094	SND1	98	82.399	ENSEEUG00000014737	SND1	100	81.538	Erinaceus_europaeus
ENSCPBG00000018094	SND1	99	83.224	ENSELUG00000001805	snd1	96	83.224	Esox_lucius
ENSCPBG00000018094	SND1	100	92.308	ENSFCAG00000008289	SND1	100	92.308	Felis_catus
ENSCPBG00000018094	SND1	98	92.825	ENSFDAG00000015881	SND1	100	91.758	Fukomys_damarensis
ENSCPBG00000018094	SND1	100	82.277	ENSFHEG00000004093	snd1	99	84.343	Fundulus_heteroclitus
ENSCPBG00000018094	SND1	64	74.011	ENSGMOG00000018932	snd1	65	74.011	Gadus_morhua
ENSCPBG00000018094	SND1	100	84.303	ENSGAFG00000008421	snd1	100	84.303	Gambusia_affinis
ENSCPBG00000018094	SND1	100	54.674	ENSGACG00000019793	snd1	100	54.674	Gasterosteus_aculeatus
ENSCPBG00000018094	SND1	98	93.274	ENSGGOG00000009614	SND1	99	93.326	Gorilla_gorilla
ENSCPBG00000018094	SND1	100	83.754	ENSHBUG00000019135	snd1	100	83.754	Haplochromis_burtoni
ENSCPBG00000018094	SND1	98	92.489	ENSHGLG00000003618	SND1	100	91.538	Heterocephalus_glaber_female
ENSCPBG00000018094	SND1	99	91.621	ENSHGLG00100012449	SND1	99	91.621	Heterocephalus_glaber_male
ENSCPBG00000018094	SND1	100	83.205	ENSHCOG00000005266	snd1	100	83.205	Hippocampus_comes
ENSCPBG00000018094	SND1	99	82.948	ENSIPUG00000013279	snd1	99	82.948	Ictalurus_punctatus
ENSCPBG00000018094	SND1	98	92.825	ENSSTOG00000002140	SND1	100	91.868	Ictidomys_tridecemlineatus
ENSCPBG00000018094	SND1	98	92.937	ENSJJAG00000009561	Snd1	100	91.978	Jaculus_jaculus
ENSCPBG00000018094	SND1	100	84.632	ENSKMAG00000016997	snd1	100	84.632	Kryptolebias_marmoratus
ENSCPBG00000018094	SND1	100	85.714	ENSLBEG00000013563	snd1	100	85.714	Labrus_bergylta
ENSCPBG00000018094	SND1	98	85.619	ENSLOCG00000015537	snd1	99	84.733	Lepisosteus_oculatus
ENSCPBG00000018094	SND1	100	91.978	ENSLAFG00000009696	SND1	100	91.978	Loxodonta_africana
ENSCPBG00000018094	SND1	98	93.386	ENSMFAG00000038114	SND1	99	93.439	Macaca_fascicularis
ENSCPBG00000018094	SND1	98	93.386	ENSMMUG00000015432	SND1	100	92.418	Macaca_mulatta
ENSCPBG00000018094	SND1	98	93.386	ENSMNEG00000039808	SND1	100	93.446	Macaca_nemestrina
ENSCPBG00000018094	SND1	98	93.274	ENSMLEG00000029040	SND1	100	93.333	Mandrillus_leucophaeus
ENSCPBG00000018094	SND1	100	83.425	ENSMAMG00000011739	snd1	100	83.425	Mastacembelus_armatus
ENSCPBG00000018094	SND1	100	83.644	ENSMZEG00005005681	snd1	100	83.644	Maylandia_zebra
ENSCPBG00000018094	SND1	98	93.161	ENSMICG00000000097	SND1	100	92.198	Microcebus_murinus
ENSCPBG00000018094	SND1	98	92.265	ENSMOCG00000005040	Snd1	100	91.319	Microtus_ochrogaster
ENSCPBG00000018094	SND1	100	83.205	ENSMMOG00000001795	snd1	100	83.205	Mola_mola
ENSCPBG00000018094	SND1	98	92.713	ENSMODG00000015182	SND1	100	91.758	Monodelphis_domestica
ENSCPBG00000018094	SND1	100	82.986	ENSMALG00000012071	snd1	100	82.986	Monopterus_albus
ENSCPBG00000018094	SND1	98	91.928	MGP_CAROLIEiJ_G0028159	Snd1	99	92.411	Mus_caroli
ENSCPBG00000018094	SND1	98	91.704	ENSMUSG00000001424	Snd1	100	90.769	Mus_musculus
ENSCPBG00000018094	SND1	98	91.928	MGP_PahariEiJ_G0021917	Snd1	100	92.411	Mus_pahari
ENSCPBG00000018094	SND1	98	91.928	MGP_SPRETEiJ_G0029159	Snd1	100	90.989	Mus_spretus
ENSCPBG00000018094	SND1	100	91.978	ENSMPUG00000006545	SND1	100	91.209	Mustela_putorius_furo
ENSCPBG00000018094	SND1	97	91.508	ENSMLUG00000017130	SND1	99	91.508	Myotis_lucifugus
ENSCPBG00000018094	SND1	98	92.377	ENSNGAG00000011186	Snd1	100	91.429	Nannospalax_galili
ENSCPBG00000018094	SND1	100	83.535	ENSNBRG00000006681	snd1	100	83.535	Neolamprologus_brichardi
ENSCPBG00000018094	SND1	100	92.198	ENSNLEG00000012263	SND1	100	93.333	Nomascus_leucogenys
ENSCPBG00000018094	SND1	91	91.667	ENSOPRG00000013405	SND1	92	91.667	Ochotona_princeps
ENSCPBG00000018094	SND1	99	92.531	ENSODEG00000011502	SND1	99	91.951	Octodon_degus
ENSCPBG00000018094	SND1	100	83.535	ENSONIG00000011481	snd1	97	83.535	Oreochromis_niloticus
ENSCPBG00000018094	SND1	98	93.806	ENSOANG00000000817	SND1	98	93.806	Ornithorhynchus_anatinus
ENSCPBG00000018094	SND1	100	91.319	ENSOCUG00000001620	SND1	100	91.319	Oryctolagus_cuniculus
ENSCPBG00000018094	SND1	98	84.340	ENSORLG00000015201	snd1	100	83.535	Oryzias_latipes
ENSCPBG00000018094	SND1	98	84.452	ENSORLG00020013991	snd1	100	83.644	Oryzias_latipes_hni
ENSCPBG00000018094	SND1	98	84.452	ENSORLG00015012436	snd1	100	83.644	Oryzias_latipes_hsok
ENSCPBG00000018094	SND1	100	83.754	ENSOMEG00000006406	snd1	100	83.754	Oryzias_melastigma
ENSCPBG00000018094	SND1	98	92.841	ENSOGAG00000013356	SND1	94	91.886	Otolemur_garnettii
ENSCPBG00000018094	SND1	97	90.508	ENSOARG00000002149	SND1	100	90.508	Ovis_aries
ENSCPBG00000018094	SND1	98	93.161	ENSPPAG00000042947	SND1	99	93.213	Pan_paniscus
ENSCPBG00000018094	SND1	100	92.308	ENSPPRG00000004494	SND1	100	92.308	Panthera_pardus
ENSCPBG00000018094	SND1	100	92.418	ENSPTIG00000014214	SND1	100	92.418	Panthera_tigris_altaica
ENSCPBG00000018094	SND1	98	93.161	ENSPTRG00000023911	SND1	99	93.213	Pan_troglodytes
ENSCPBG00000018094	SND1	97	93.439	ENSPANG00000011997	SND1	99	93.439	Papio_anubis
ENSCPBG00000018094	SND1	99	82.048	ENSPKIG00000023494	snd1	100	81.433	Paramormyrops_kingsleyae
ENSCPBG00000018094	SND1	92	83.353	ENSPMGG00000003629	snd1	100	83.353	Periophthalmus_magnuspinnatus
ENSCPBG00000018094	SND1	98	92.040	ENSPEMG00000010240	Snd1	100	91.099	Peromyscus_maniculatus_bairdii
ENSCPBG00000018094	SND1	97	74.915	ENSPMAG00000007915	-	99	74.689	Petromyzon_marinus
ENSCPBG00000018094	SND1	98	93.386	ENSPCIG00000011561	SND1	100	92.418	Phascolarctos_cinereus
ENSCPBG00000018094	SND1	100	84.083	ENSPFOG00000001557	snd1	100	84.083	Poecilia_formosa
ENSCPBG00000018094	SND1	100	84.083	ENSPLAG00000018459	snd1	97	84.083	Poecilia_latipinna
ENSCPBG00000018094	SND1	100	84.303	ENSPMEG00000006803	snd1	100	84.303	Poecilia_mexicana
ENSCPBG00000018094	SND1	100	83.974	ENSPREG00000002189	snd1	100	83.974	Poecilia_reticulata
ENSCPBG00000018094	SND1	91	93.147	ENSPPYG00000017972	SND1	100	92.050	Pongo_abelii
ENSCPBG00000018094	SND1	98	81.839	ENSPCAG00000011305	SND1	100	80.989	Procavia_capensis
ENSCPBG00000018094	SND1	98	93.049	ENSPCOG00000026791	SND1	100	93.107	Propithecus_coquereli
ENSCPBG00000018094	SND1	98	90.807	ENSPVAG00000013945	SND1	100	89.890	Pteropus_vampyrus
ENSCPBG00000018094	SND1	100	83.644	ENSPNYG00000000932	snd1	100	83.644	Pundamilia_nyererei
ENSCPBG00000018094	SND1	99	84.048	ENSPNAG00000001206	snd1	99	84.048	Pygocentrus_nattereri
ENSCPBG00000018094	SND1	98	92.040	ENSRNOG00000031173	Snd1	100	91.199	Rattus_norvegicus
ENSCPBG00000018094	SND1	73	94.925	ENSRBIG00000027782	-	93	95.057	Rhinopithecus_bieti
ENSCPBG00000018094	SND1	98	93.386	ENSRROG00000033020	SND1	100	92.418	Rhinopithecus_roxellana
ENSCPBG00000018094	SND1	100	90.969	ENSSBOG00000032461	SND1	99	92.986	Saimiri_boliviensis_boliviensis
ENSCPBG00000018094	SND1	98	89.640	ENSSHAG00000015359	SND1	100	89.640	Sarcophilus_harrisii
ENSCPBG00000018094	SND1	98	83.685	ENSSFOG00015001103	snd1	100	82.916	Scleropages_formosus
ENSCPBG00000018094	SND1	98	84.340	ENSSMAG00000001932	snd1	95	83.754	Scophthalmus_maximus
ENSCPBG00000018094	SND1	100	83.864	ENSSDUG00000002699	snd1	94	83.864	Seriola_dumerili
ENSCPBG00000018094	SND1	100	76.509	ENSSLDG00000001950	snd1	100	76.509	Seriola_lalandi_dorsalis
ENSCPBG00000018094	SND1	86	89.623	ENSSARG00000004877	SND1	92	89.623	Sorex_araneus
ENSCPBG00000018094	SND1	71	90.609	ENSSPUG00000017586	SND1	96	90.609	Sphenodon_punctatus
ENSCPBG00000018094	SND1	75	86.102	ENSSPAG00000021398	snd1	99	86.102	Stegastes_partitus
ENSCPBG00000018094	SND1	98	92.937	ENSSSCG00000016590	SND1	100	91.978	Sus_scrofa
ENSCPBG00000018094	SND1	100	82.500	ENSTRUG00000014067	snd1	100	82.437	Takifugu_rubripes
ENSCPBG00000018094	SND1	100	83.425	ENSTNIG00000011019	snd1	98	85.738	Tetraodon_nigroviridis
ENSCPBG00000018094	SND1	93	87.382	ENSTBEG00000003999	SND1	100	87.382	Tupaia_belangeri
ENSCPBG00000018094	SND1	98	88.565	ENSTTRG00000006059	SND1	100	87.692	Tursiops_truncatus
ENSCPBG00000018094	SND1	91	92.395	ENSUAMG00000005604	-	93	92.395	Ursus_americanus
ENSCPBG00000018094	SND1	67	82.732	ENSUAMG00000002820	-	90	82.171	Ursus_americanus
ENSCPBG00000018094	SND1	100	91.868	ENSUMAG00000005960	SND1	100	91.868	Ursus_maritimus
ENSCPBG00000018094	SND1	73	91.667	ENSVPAG00000008302	SND1	74	91.667	Vicugna_pacos
ENSCPBG00000018094	SND1	100	92.088	ENSVVUG00000007226	SND1	100	92.088	Vulpes_vulpes
ENSCPBG00000018094	SND1	97	85.198	ENSXETG00000023043	snd1	100	85.240	Xenopus_tropicalis
ENSCPBG00000018094	SND1	93	82.185	ENSXCOG00000013629	snd1	99	82.185	Xiphophorus_couchianus
ENSCPBG00000018094	SND1	100	84.413	ENSXMAG00000011469	snd1	100	84.413	Xiphophorus_maculatus