EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000018910 (Gene tree)
Gene ID: 101938272
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 33256 bases
Position: chrKK088237.1:1097458-1130713
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000026633	CPSF_A	PF03178.15	3.7e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000031377	CPSF1-201	4613	XM_005291127	ENSCPBP00000026633	1486 (aa)	XP_005291184	-

Gene Model

Click here to download ENSCPBG00000018910's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000018910's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000018910	CPSF1	96	87.413	ENSG00000071894	CPSF1	99	87.343	Homo_sapiens
ENSCPBG00000018910	CPSF1	97	79.375	ENSAPOG00000019621	cpsf1	99	79.901	Acanthochromis_polyacanthus
ENSCPBG00000018910	CPSF1	93	86.291	ENSAMEG00000005557	CPSF1	99	86.291	Ailuropoda_melanoleuca
ENSCPBG00000018910	CPSF1	96	79.874	ENSACIG00000006112	cpsf1	99	80.014	Amphilophus_citrinellus
ENSCPBG00000018910	CPSF1	96	80.612	ENSAOCG00000007120	cpsf1	99	80.473	Amphiprion_ocellaris
ENSCPBG00000018910	CPSF1	96	81.458	ENSAPEG00000005755	cpsf1	99	81.250	Amphiprion_percula
ENSCPBG00000018910	CPSF1	96	80.164	ENSATEG00000011097	cpsf1	99	80.027	Anabas_testudineus
ENSCPBG00000018910	CPSF1	90	87.193	ENSACAG00000009655	CPSF1	100	87.193	Anolis_carolinensis
ENSCPBG00000018910	CPSF1	96	87.544	ENSANAG00000036514	CPSF1	99	87.544	Aotus_nancymaae
ENSCPBG00000018910	CPSF1	98	78.828	ENSACLG00000012231	cpsf1	100	78.828	Astatotilapia_calliptera
ENSCPBG00000018910	CPSF1	96	75.523	ENSAMXG00000008485	cpsf1	99	75.593	Astyanax_mexicanus
ENSCPBG00000018910	CPSF1	96	87.570	ENSBTAG00000008355	CPSF1	99	87.090	Bos_taurus
ENSCPBG00000018910	CPSF1	96	32.353	WBGene00022301	cpsf-1	94	41.617	Caenorhabditis_elegans
ENSCPBG00000018910	CPSF1	96	87.404	ENSCJAG00000021421	CPSF1	99	87.404	Callithrix_jacchus
ENSCPBG00000018910	CPSF1	93	87.798	ENSCAFG00000001600	CPSF1	99	87.798	Canis_familiaris
ENSCPBG00000018910	CPSF1	96	87.841	ENSCAFG00020020821	CPSF1	99	87.841	Canis_lupus_dingo
ENSCPBG00000018910	CPSF1	96	82.925	ENSCHIG00000015833	CPSF1	99	82.925	Capra_hircus
ENSCPBG00000018910	CPSF1	96	87.964	ENSTSYG00000028560	CPSF1	99	87.964	Carlito_syrichta
ENSCPBG00000018910	CPSF1	93	86.575	ENSCAPG00000014921	CPSF1	98	86.575	Cavia_aperea
ENSCPBG00000018910	CPSF1	96	85.864	ENSCPOG00000011448	CPSF1	99	85.864	Cavia_porcellus
ENSCPBG00000018910	CPSF1	96	87.544	ENSCCAG00000037658	CPSF1	99	87.544	Cebus_capucinus
ENSCPBG00000018910	CPSF1	96	87.334	ENSCATG00000037234	CPSF1	98	88.358	Cercocebus_atys
ENSCPBG00000018910	CPSF1	96	87.745	ENSCLAG00000012166	CPSF1	99	87.745	Chinchilla_lanigera
ENSCPBG00000018910	CPSF1	96	87.334	ENSCSAG00000008502	CPSF1	99	87.334	Chlorocebus_sabaeus
ENSCPBG00000018910	CPSF1	93	48.214	ENSCING00000000514	-	100	48.143	Ciona_intestinalis
ENSCPBG00000018910	CPSF1	96	48.821	ENSCSAVG00000002293	-	99	48.821	Ciona_savignyi
ENSCPBG00000018910	CPSF1	95	83.180	ENSCANG00000032760	CPSF1	99	83.180	Colobus_angolensis_palliatus
ENSCPBG00000018910	CPSF1	96	87.605	ENSCGRG00001016344	Cpsf1	99	87.605	Cricetulus_griseus_chok1gshd
ENSCPBG00000018910	CPSF1	96	85.574	ENSCGRG00000003118	Cpsf1	99	85.574	Cricetulus_griseus_crigri
ENSCPBG00000018910	CPSF1	96	79.930	ENSCSEG00000013464	cpsf1	99	79.838	Cynoglossus_semilaevis
ENSCPBG00000018910	CPSF1	82	79.022	ENSCVAG00000014059	cpsf1	88	79.093	Cyprinodon_variegatus
ENSCPBG00000018910	CPSF1	96	80.724	ENSDARG00000034178	cpsf1	99	80.932	Danio_rerio
ENSCPBG00000018910	CPSF1	55	89.275	ENSDNOG00000043654	CPSF1	94	89.275	Dasypus_novemcinctus
ENSCPBG00000018910	CPSF1	93	87.808	ENSDORG00000006278	Cpsf1	98	87.808	Dipodomys_ordii
ENSCPBG00000018910	CPSF1	96	44.799	FBgn0024698	Cpsf160	99	45.034	Drosophila_melanogaster
ENSCPBG00000018910	CPSF1	78	91.946	ENSETEG00000006022	CPSF1	83	91.946	Echinops_telfairi
ENSCPBG00000018910	CPSF1	96	87.841	ENSEASG00005010774	CPSF1	99	87.841	Equus_asinus_asinus
ENSCPBG00000018910	CPSF1	96	87.980	ENSECAG00000022209	CPSF1	99	87.980	Equus_caballus
ENSCPBG00000018910	CPSF1	96	87.151	ENSEEUG00000000471	CPSF1	99	87.151	Erinaceus_europaeus
ENSCPBG00000018910	CPSF1	96	79.420	ENSELUG00000012271	cpsf1	99	79.813	Esox_lucius
ENSCPBG00000018910	CPSF1	96	87.815	ENSFDAG00000016060	CPSF1	99	87.815	Fukomys_damarensis
ENSCPBG00000018910	CPSF1	96	79.624	ENSFHEG00000016801	cpsf1	99	79.624	Fundulus_heteroclitus
ENSCPBG00000018910	CPSF1	96	79.375	ENSGMOG00000000796	cpsf1	99	79.749	Gadus_morhua
ENSCPBG00000018910	CPSF1	92	78.614	ENSGAFG00000018890	cpsf1	99	78.571	Gambusia_affinis
ENSCPBG00000018910	CPSF1	96	80.195	ENSGACG00000008703	cpsf1	99	80.195	Gasterosteus_aculeatus
ENSCPBG00000018910	CPSF1	96	93.510	ENSGAGG00000004276	CPSF1	98	98.908	Gopherus_agassizii
ENSCPBG00000018910	CPSF1	96	87.535	ENSGGOG00000016185	CPSF1	99	87.535	Gorilla_gorilla
ENSCPBG00000018910	CPSF1	96	81.551	ENSHBUG00000018900	cpsf1	99	81.342	Haplochromis_burtoni
ENSCPBG00000018910	CPSF1	96	87.605	ENSHGLG00000016139	CPSF1	99	87.605	Heterocephalus_glaber_female
ENSCPBG00000018910	CPSF1	96	87.535	ENSHGLG00100009750	CPSF1	99	87.535	Heterocephalus_glaber_male
ENSCPBG00000018910	CPSF1	96	78.255	ENSHCOG00000018509	cpsf1	99	78.684	Hippocampus_comes
ENSCPBG00000018910	CPSF1	96	78.264	ENSIPUG00000011259	cpsf1	99	78.056	Ictalurus_punctatus
ENSCPBG00000018910	CPSF1	93	87.346	ENSSTOG00000009957	CPSF1	98	87.346	Ictidomys_tridecemlineatus
ENSCPBG00000018910	CPSF1	96	87.815	ENSJJAG00000023002	Cpsf1	99	87.815	Jaculus_jaculus
ENSCPBG00000018910	CPSF1	87	85.574	ENSKMAG00000001940	cpsf1	98	85.574	Kryptolebias_marmoratus
ENSCPBG00000018910	CPSF1	96	78.701	ENSLBEG00000003601	cpsf1	99	78.933	Labrus_bergylta
ENSCPBG00000018910	CPSF1	84	83.619	ENSLACG00000000233	CPSF1	99	70.409	Latimeria_chalumnae
ENSCPBG00000018910	CPSF1	96	80.697	ENSLOCG00000008484	cpsf1	99	81.045	Lepisosteus_oculatus
ENSCPBG00000018910	CPSF1	93	87.835	ENSLAFG00000022601	CPSF1	99	87.835	Loxodonta_africana
ENSCPBG00000018910	CPSF1	96	87.334	ENSMFAG00000037013	CPSF1	99	87.334	Macaca_fascicularis
ENSCPBG00000018910	CPSF1	96	87.404	ENSMMUG00000007380	CPSF1	99	87.404	Macaca_mulatta
ENSCPBG00000018910	CPSF1	93	87.600	ENSMNEG00000043564	CPSF1	99	87.600	Macaca_nemestrina
ENSCPBG00000018910	CPSF1	96	87.334	ENSMLEG00000043010	CPSF1	99	87.334	Mandrillus_leucophaeus
ENSCPBG00000018910	CPSF1	96	80.068	ENSMAMG00000003803	cpsf1	99	79.932	Mastacembelus_armatus
ENSCPBG00000018910	CPSF1	96	79.175	ENSMZEG00005001168	cpsf1	99	78.896	Maylandia_zebra
ENSCPBG00000018910	CPSF1	96	87.605	ENSMAUG00000003601	Cpsf1	99	87.605	Mesocricetus_auratus
ENSCPBG00000018910	CPSF1	96	87.745	ENSMICG00000015767	CPSF1	99	87.745	Microcebus_murinus
ENSCPBG00000018910	CPSF1	96	87.605	ENSMOCG00000022758	Cpsf1	99	87.605	Microtus_ochrogaster
ENSCPBG00000018910	CPSF1	96	80.866	ENSMMOG00000021245	cpsf1	99	80.740	Mola_mola
ENSCPBG00000018910	CPSF1	96	89.686	ENSMODG00000010755	CPSF1	99	89.686	Monodelphis_domestica
ENSCPBG00000018910	CPSF1	99	77.279	ENSMALG00000020545	cpsf1	99	79.289	Monopterus_albus
ENSCPBG00000018910	CPSF1	96	88.025	MGP_CAROLIEiJ_G0019936	Cpsf1	99	88.025	Mus_caroli
ENSCPBG00000018910	CPSF1	96	88.087	ENSMUSG00000034022	Cpsf1	99	88.025	Mus_musculus
ENSCPBG00000018910	CPSF1	96	88.095	MGP_PahariEiJ_G0019946	Cpsf1	99	88.095	Mus_pahari
ENSCPBG00000018910	CPSF1	96	88.025	MGP_SPRETEiJ_G0020839	Cpsf1	99	88.025	Mus_spretus
ENSCPBG00000018910	CPSF1	95	85.643	ENSMPUG00000006419	CPSF1	97	85.724	Mustela_putorius_furo
ENSCPBG00000018910	CPSF1	96	88.095	ENSNGAG00000022460	Cpsf1	99	88.095	Nannospalax_galili
ENSCPBG00000018910	CPSF1	96	76.430	ENSNBRG00000000813	cpsf1	99	76.536	Neolamprologus_brichardi
ENSCPBG00000018910	CPSF1	79	91.720	ENSNLEG00000010633	-	94	91.720	Nomascus_leucogenys
ENSCPBG00000018910	CPSF1	79	90.506	ENSMEUG00000014922	CPSF1	84	90.506	Notamacropus_eugenii
ENSCPBG00000018910	CPSF1	57	92.063	ENSOPRG00000004693	-	69	92.063	Ochotona_princeps
ENSCPBG00000018910	CPSF1	96	87.885	ENSODEG00000013995	CPSF1	99	87.885	Octodon_degus
ENSCPBG00000018910	CPSF1	96	81.831	ENSONIG00000007676	cpsf1	99	81.691	Oreochromis_niloticus
ENSCPBG00000018910	CPSF1	56	86.744	ENSOANG00000010716	CPSF1	87	86.744	Ornithorhynchus_anatinus
ENSCPBG00000018910	CPSF1	99	78.600	ENSORLG00000013544	cpsf1	92	89.712	Oryzias_latipes
ENSCPBG00000018910	CPSF1	99	78.733	ENSORLG00020021693	cpsf1	92	89.712	Oryzias_latipes_hni
ENSCPBG00000018910	CPSF1	96	79.945	ENSORLG00015009979	cpsf1	99	79.945	Oryzias_latipes_hsok
ENSCPBG00000018910	CPSF1	96	80.275	ENSOMEG00000011849	cpsf1	99	80.275	Oryzias_melastigma
ENSCPBG00000018910	CPSF1	96	87.754	ENSOGAG00000000315	CPSF1	99	87.754	Otolemur_garnettii
ENSCPBG00000018910	CPSF1	96	87.614	ENSPPAG00000019280	CPSF1	99	87.614	Pan_paniscus
ENSCPBG00000018910	CPSF1	96	87.614	ENSPTRG00000049288	-	99	87.614	Pan_troglodytes
ENSCPBG00000018910	CPSF1	96	87.692	ENSPTRG00000051253	-	98	87.517	Pan_troglodytes
ENSCPBG00000018910	CPSF1	93	87.672	ENSPANG00000015005	CPSF1	99	87.672	Papio_anubis
ENSCPBG00000018910	CPSF1	96	81.939	ENSPKIG00000002582	cpsf1	99	82.402	Paramormyrops_kingsleyae
ENSCPBG00000018910	CPSF1	97	89.528	ENSPCIG00000009035	CPSF1	99	89.826	Phascolarctos_cinereus
ENSCPBG00000018910	CPSF1	96	78.879	ENSPFOG00000012870	cpsf1	99	78.811	Poecilia_formosa
ENSCPBG00000018910	CPSF1	96	78.689	ENSPREG00000016307	cpsf1	99	78.689	Poecilia_reticulata
ENSCPBG00000018910	CPSF1	96	79.916	ENSPPYG00000018973	CPSF1	99	79.916	Pongo_abelii
ENSCPBG00000018910	CPSF1	87	88.462	ENSPCAG00000011541	CPSF1	93	88.462	Procavia_capensis
ENSCPBG00000018910	CPSF1	96	84.045	ENSPCOG00000020001	CPSF1	99	84.045	Propithecus_coquereli
ENSCPBG00000018910	CPSF1	88	91.304	ENSPVAG00000006761	CPSF1	91	91.304	Pteropus_vampyrus
ENSCPBG00000018910	CPSF1	96	80.345	ENSPNYG00000004906	cpsf1	99	80.138	Pundamilia_nyererei
ENSCPBG00000018910	CPSF1	96	77.213	ENSPNAG00000024395	cpsf1	99	77.213	Pygocentrus_nattereri
ENSCPBG00000018910	CPSF1	96	87.745	ENSRNOG00000030705	Cpsf1	99	87.745	Rattus_norvegicus
ENSCPBG00000018910	CPSF1	96	87.474	ENSRBIG00000044907	CPSF1	99	87.474	Rhinopithecus_bieti
ENSCPBG00000018910	CPSF1	96	87.544	ENSRROG00000044861	CPSF1	99	87.544	Rhinopithecus_roxellana
ENSCPBG00000018910	CPSF1	93	87.455	ENSSBOG00000027177	CPSF1	99	87.455	Saimiri_boliviensis_boliviensis
ENSCPBG00000018910	CPSF1	96	89.617	ENSSHAG00000006500	CPSF1	99	89.617	Sarcophilus_harrisii
ENSCPBG00000018910	CPSF1	96	79.764	ENSSFOG00015004606	cpsf1	99	82.660	Scleropages_formosus
ENSCPBG00000018910	CPSF1	96	79.357	ENSSMAG00000020547	cpsf1	99	79.426	Scophthalmus_maximus
ENSCPBG00000018910	CPSF1	96	81.158	ENSSDUG00000001100	cpsf1	99	81.228	Seriola_dumerili
ENSCPBG00000018910	CPSF1	96	81.425	ENSSLDG00000003619	cpsf1	99	81.215	Seriola_lalandi_dorsalis
ENSCPBG00000018910	CPSF1	86	85.417	ENSSARG00000003643	CPSF1	92	85.417	Sorex_araneus
ENSCPBG00000018910	CPSF1	92	93.445	ENSSPUG00000014396	CPSF1	99	93.445	Sphenodon_punctatus
ENSCPBG00000018910	CPSF1	96	79.986	ENSSPAG00000005349	cpsf1	99	80.328	Stegastes_partitus
ENSCPBG00000018910	CPSF1	96	87.282	ENSSSCG00000005906	CPSF1	99	87.282	Sus_scrofa
ENSCPBG00000018910	CPSF1	92	79.602	ENSTRUG00000013134	cpsf1	99	79.235	Takifugu_rubripes
ENSCPBG00000018910	CPSF1	96	80.208	ENSTNIG00000014027	cpsf1	99	80.055	Tetraodon_nigroviridis
ENSCPBG00000018910	CPSF1	75	81.067	ENSTBEG00000001756	CPSF1	91	80.895	Tupaia_belangeri
ENSCPBG00000018910	CPSF1	86	89.204	ENSTTRG00000001937	CPSF1	89	89.204	Tursiops_truncatus
ENSCPBG00000018910	CPSF1	93	87.942	ENSUAMG00000006476	CPSF1	97	87.942	Ursus_americanus
ENSCPBG00000018910	CPSF1	96	79.888	ENSXCOG00000003608	cpsf1	99	79.749	Xiphophorus_couchianus
ENSCPBG00000018910	CPSF1	96	79.204	ENSXMAG00000005798	cpsf1	99	79.204	Xiphophorus_maculatus