EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000019382 (Gene tree)
Gene ID: 101937197
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 204392 bases
Position: chrKK082922.1:11004567-11208958
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000027405	ResIII	PF04851.15	3e-06	1	1
ENSCPBP00000027386	ResIII	PF04851.15	3e-06	1	1
ENSCPBP00000027416	ResIII	PF04851.15	3e-06	1	1
ENSCPBP00000027380	ResIII	PF04851.15	3e-06	1	1
ENSCPBP00000027395	ResIII	PF04851.15	3e-06	1	1
ENSCPBP00000027386	BRK	PF07533.16	3.6e-15	1	1
ENSCPBP00000027416	BRK	PF07533.16	3.6e-15	1	1
ENSCPBP00000027380	BRK	PF07533.16	3.7e-15	1	1
ENSCPBP00000027395	BRK	PF07533.16	3.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000032226	CHD6-201	8967	-	ENSCPBP00000027380	2726 (aa)	XP_023960883	UPI00046BF5CE
ENSCPBT00000032245	CHD6-203	8980	-	ENSCPBP00000027395	2726 (aa)	XP_023960883	UPI00046BF5CE
ENSCPBT00000032255	CHD6-204	8875	-	ENSCPBP00000027405	2691 (aa)	XP_008166371	UPI00046C203E
ENSCPBT00000032233	CHD6-202	8911	-	ENSCPBP00000027386	2710 (aa)	XP_008166368	UPI00046C062E
ENSCPBT00000032267	CHD6-205	9447	-	ENSCPBP00000027416	2710 (aa)	XP_008166368	UPI00046C062E

Gene Model

Click here to download ENSCPBG00000019382's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000019382's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000019382	CHD6	83	62.120	ENSCPBG00000012459	CHD9	80	64.990
ENSCPBG00000019382	CHD6	74	68.462	ENSCPBG00000021517	CHD7	90	69.415
ENSCPBG00000019382	CHD6	54	65.508	ENSCPBG00000012687	CHD8	62	65.666

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000019382	CHD6	99	74.012	ENSG00000124177	CHD6	99	93.798	Homo_sapiens
ENSCPBG00000019382	CHD6	74	76.090	ENSAPOG00000013736	chd6	61	76.203	Acanthochromis_polyacanthus
ENSCPBG00000019382	CHD6	99	73.854	ENSAMEG00000009496	CHD6	99	73.744	Ailuropoda_melanoleuca
ENSCPBG00000019382	CHD6	81	72.800	ENSATEG00000005608	chd6	64	76.592	Anabas_testudineus
ENSCPBG00000019382	CHD6	99	82.287	ENSAPLG00000015592	CHD6	99	83.141	Anas_platyrhynchos
ENSCPBG00000019382	CHD6	99	75.055	ENSACAG00000006842	CHD6	99	74.679	Anolis_carolinensis
ENSCPBG00000019382	CHD6	99	73.331	ENSANAG00000037548	CHD6	99	89.358	Aotus_nancymaae
ENSCPBG00000019382	CHD6	80	72.733	ENSAMXG00000009576	chd6	72	75.000	Astyanax_mexicanus
ENSCPBG00000019382	CHD6	99	73.309	ENSBTAG00000005733	CHD6	91	82.337	Bos_taurus
ENSCPBG00000019382	CHD6	99	73.590	ENSCJAG00000017920	CHD6	99	89.541	Callithrix_jacchus
ENSCPBG00000019382	CHD6	99	74.054	ENSCAFG00000009236	CHD6	99	73.760	Canis_familiaris
ENSCPBG00000019382	CHD6	99	73.961	ENSCAFG00020012906	CHD6	95	91.892	Canis_lupus_dingo
ENSCPBG00000019382	CHD6	99	73.003	ENSCHIG00000017606	CHD6	91	82.169	Capra_hircus
ENSCPBG00000019382	CHD6	84	73.551	ENSTSYG00000014635	CHD6	99	73.464	Carlito_syrichta
ENSCPBG00000019382	CHD6	99	73.638	ENSCPOG00000015641	CHD6	99	73.249	Cavia_porcellus
ENSCPBG00000019382	CHD6	99	73.372	ENSCCAG00000036828	CHD6	99	89.358	Cebus_capucinus
ENSCPBG00000019382	CHD6	99	73.548	ENSCATG00000039248	CHD6	99	89.358	Cercocebus_atys
ENSCPBG00000019382	CHD6	99	73.548	ENSCLAG00000013743	CHD6	99	73.090	Chinchilla_lanigera
ENSCPBG00000019382	CHD6	99	73.748	ENSCSAG00000013997	CHD6	99	73.175	Chlorocebus_sabaeus
ENSCPBG00000019382	CHD6	91	80.160	ENSCHOG00000012647	CHD6	95	79.462	Choloepus_hoffmanni
ENSCPBG00000019382	CHD6	99	73.998	ENSCANG00000043435	CHD6	99	89.358	Colobus_angolensis_palliatus
ENSCPBG00000019382	CHD6	99	73.126	ENSCGRG00001002694	Chd6	99	72.681	Cricetulus_griseus_chok1gshd
ENSCPBG00000019382	CHD6	80	76.789	ENSDARG00000017244	chd6	74	78.898	Danio_rerio
ENSCPBG00000019382	CHD6	99	73.830	ENSDNOG00000004176	CHD6	99	73.387	Dasypus_novemcinctus
ENSCPBG00000019382	CHD6	99	73.446	ENSEASG00005023433	CHD6	95	93.822	Equus_asinus_asinus
ENSCPBG00000019382	CHD6	99	73.642	ENSECAG00000011761	CHD6	99	73.241	Equus_caballus
ENSCPBG00000019382	CHD6	73	80.092	ENSELUG00000012309	chd6	93	80.092	Esox_lucius
ENSCPBG00000019382	CHD6	99	73.776	ENSFCAG00000003572	CHD6	99	73.355	Felis_catus
ENSCPBG00000019382	CHD6	100	82.532	ENSFALG00000012563	CHD6	99	82.043	Ficedula_albicollis
ENSCPBG00000019382	CHD6	99	73.804	ENSFDAG00000013791	CHD6	99	73.385	Fukomys_damarensis
ENSCPBG00000019382	CHD6	73	70.723	ENSGMOG00000011715	chd6	84	70.723	Gadus_morhua
ENSCPBG00000019382	CHD6	77	72.448	ENSGACG00000000037	chd6	81	73.884	Gasterosteus_aculeatus
ENSCPBG00000019382	CHD6	99	74.067	ENSGGOG00000013123	CHD6	99	89.358	Gorilla_gorilla
ENSCPBG00000019382	CHD6	79	74.183	ENSHBUG00000014701	chd6	64	76.225	Haplochromis_burtoni
ENSCPBG00000019382	CHD6	99	73.221	ENSHGLG00000004548	CHD6	99	72.903	Heterocephalus_glaber_female
ENSCPBG00000019382	CHD6	99	73.221	ENSHGLG00100006401	CHD6	99	72.615	Heterocephalus_glaber_male
ENSCPBG00000019382	CHD6	77	78.193	ENSIPUG00000003692	chd6	74	77.361	Ictalurus_punctatus
ENSCPBG00000019382	CHD6	99	73.156	ENSSTOG00000013382	CHD6	99	72.758	Ictidomys_tridecemlineatus
ENSCPBG00000019382	CHD6	88	78.101	ENSLACG00000010881	CHD6	88	78.069	Latimeria_chalumnae
ENSCPBG00000019382	CHD6	73	82.555	ENSLOCG00000007386	chd6	80	81.292	Lepisosteus_oculatus
ENSCPBG00000019382	CHD6	99	74.269	ENSLAFG00000012144	CHD6	99	73.604	Loxodonta_africana
ENSCPBG00000019382	CHD6	99	73.767	ENSMFAG00000032830	CHD6	99	89.358	Macaca_fascicularis
ENSCPBG00000019382	CHD6	99	73.767	ENSMMUG00000020458	CHD6	99	89.358	Macaca_mulatta
ENSCPBG00000019382	CHD6	99	73.694	ENSMNEG00000040847	CHD6	99	89.358	Macaca_nemestrina
ENSCPBG00000019382	CHD6	99	73.880	ENSMLEG00000031965	CHD6	99	89.358	Mandrillus_leucophaeus
ENSCPBG00000019382	CHD6	76	74.823	ENSMAMG00000013111	chd6	64	76.764	Mastacembelus_armatus
ENSCPBG00000019382	CHD6	100	80.490	ENSMGAG00000001121	CHD6	99	82.181	Meleagris_gallopavo
ENSCPBG00000019382	CHD6	100	72.939	ENSMICG00000016641	CHD6	99	89.358	Microcebus_murinus
ENSCPBG00000019382	CHD6	89	77.228	ENSMODG00000000720	-	93	84.049	Monodelphis_domestica
ENSCPBG00000019382	CHD6	99	72.721	MGP_CAROLIEiJ_G0024604	Chd6	100	86.146	Mus_caroli
ENSCPBG00000019382	CHD6	99	72.694	ENSMUSG00000057133	Chd6	100	85.978	Mus_musculus
ENSCPBG00000019382	CHD6	99	72.574	MGP_PahariEiJ_G0026048	Chd6	100	86.314	Mus_pahari
ENSCPBG00000019382	CHD6	99	72.767	MGP_SPRETEiJ_G0025526	Chd6	100	86.062	Mus_spretus
ENSCPBG00000019382	CHD6	99	73.156	ENSMPUG00000017695	CHD6	99	72.896	Mustela_putorius_furo
ENSCPBG00000019382	CHD6	99	73.482	ENSMLUG00000016247	CHD6	99	73.153	Myotis_lucifugus
ENSCPBG00000019382	CHD6	80	74.101	ENSNBRG00000013839	chd6	78	76.696	Neolamprologus_brichardi
ENSCPBG00000019382	CHD6	99	72.385	ENSNLEG00000006496	CHD6	99	71.851	Nomascus_leucogenys
ENSCPBG00000019382	CHD6	99	70.867	ENSOPRG00000013376	-	99	70.372	Ochotona_princeps
ENSCPBG00000019382	CHD6	82	75.561	ENSONIG00000000393	chd6	81	78.237	Oreochromis_niloticus
ENSCPBG00000019382	CHD6	95	74.989	ENSOANG00000014347	CHD6	99	68.730	Ornithorhynchus_anatinus
ENSCPBG00000019382	CHD6	99	72.210	ENSOCUG00000012394	CHD6	99	71.455	Oryctolagus_cuniculus
ENSCPBG00000019382	CHD6	77	72.184	ENSORLG00020021891	chd6	95	87.375	Oryzias_latipes_hni
ENSCPBG00000019382	CHD6	99	72.714	ENSOGAG00000002427	CHD6	99	72.202	Otolemur_garnettii
ENSCPBG00000019382	CHD6	99	71.267	ENSOARG00000002597	CHD6	91	80.078	Ovis_aries
ENSCPBG00000019382	CHD6	99	73.757	ENSPPRG00000014756	CHD6	99	73.282	Panthera_pardus
ENSCPBG00000019382	CHD6	99	73.721	ENSPTIG00000011094	CHD6	99	73.246	Panthera_tigris_altaica
ENSCPBG00000019382	CHD6	99	74.071	ENSPTRG00000013504	CHD6	99	89.358	Pan_troglodytes
ENSCPBG00000019382	CHD6	99	73.913	ENSPANG00000025554	CHD6	99	89.541	Papio_anubis
ENSCPBG00000019382	CHD6	76	79.081	ENSPKIG00000005578	chd6	72	81.890	Paramormyrops_kingsleyae
ENSCPBG00000019382	CHD6	76	77.532	ENSPMGG00000014877	chd6	88	78.339	Periophthalmus_magnuspinnatus
ENSCPBG00000019382	CHD6	99	76.166	ENSPCIG00000028037	CHD6	99	76.112	Phascolarctos_cinereus
ENSCPBG00000019382	CHD6	76	73.858	ENSPLAG00000003128	chd6	68	75.672	Poecilia_latipinna
ENSCPBG00000019382	CHD6	75	75.343	ENSPREG00000022653	chd6	99	87.546	Poecilia_reticulata
ENSCPBG00000019382	CHD6	99	73.867	ENSPPYG00000011016	CHD6	99	73.115	Pongo_abelii
ENSCPBG00000019382	CHD6	100	73.736	ENSPCOG00000001089	CHD6	99	89.358	Propithecus_coquereli
ENSCPBG00000019382	CHD6	80	75.880	ENSPNYG00000022516	chd6	78	78.836	Pundamilia_nyererei
ENSCPBG00000019382	CHD6	77	74.934	ENSPNAG00000012825	chd6	74	76.603	Pygocentrus_nattereri
ENSCPBG00000019382	CHD6	99	72.620	ENSRNOG00000016744	Chd6	99	72.200	Rattus_norvegicus
ENSCPBG00000019382	CHD6	99	73.336	ENSSBOG00000022089	CHD6	99	89.358	Saimiri_boliviensis_boliviensis
ENSCPBG00000019382	CHD6	99	76.096	ENSSHAG00000017072	CHD6	99	76.141	Sarcophilus_harrisii
ENSCPBG00000019382	CHD6	80	76.574	ENSSFOG00015012920	chd6	76	78.026	Scleropages_formosus
ENSCPBG00000019382	CHD6	58	98.684	ENSSARG00000002615	-	58	98.684	Sorex_araneus
ENSCPBG00000019382	CHD6	99	73.752	ENSSSCG00000007360	CHD6	91	82.562	Sus_scrofa
ENSCPBG00000019382	CHD6	97	83.803	ENSTGUG00000003179	CHD6	98	84.083	Taeniopygia_guttata
ENSCPBG00000019382	CHD6	73	77.461	ENSTNIG00000017487	chd6	82	77.021	Tetraodon_nigroviridis
ENSCPBG00000019382	CHD6	99	70.867	ENSTTRG00000013438	CHD6	91	79.672	Tursiops_truncatus
ENSCPBG00000019382	CHD6	99	72.434	ENSUAMG00000024036	CHD6	95	91.892	Ursus_americanus
ENSCPBG00000019382	CHD6	99	73.597	ENSUMAG00000002017	CHD6	95	91.892	Ursus_maritimus
ENSCPBG00000019382	CHD6	93	80.360	ENSVPAG00000007941	CHD6	86	80.245	Vicugna_pacos
ENSCPBG00000019382	CHD6	99	74.222	ENSVVUG00000029164	CHD6	99	73.856	Vulpes_vulpes
ENSCPBG00000019382	CHD6	88	72.009	ENSXETG00000021445	chd6	88	73.213	Xenopus_tropicalis