EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000020369 (Gene tree)
Gene ID: 101943949
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 148122 bases
Position: chrKK082936.1:7153948-7302069
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000028877	EST1	PF10374.9	2.8e-14	1	1
ENSCPBP00000028877	EST1_DNA_bind	PF10373.9	6.4e-59	1	1
ENSCPBP00000028877	PIN_4	PF13638.6	2.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000033990	SMG6-201	4437	-	ENSCPBP00000028877	1423 (aa)	XP_008167233	UPI00046C0ED1

Gene Model

Click here to download ENSCPBG00000020369's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000020369's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000020369	SMG6	100	72.203	ENSG00000070366	SMG6	100	82.192	Homo_sapiens
ENSCPBG00000020369	SMG6	71	58.646	ENSAPOG00000019448	smg6	79	52.802	Acanthochromis_polyacanthus
ENSCPBG00000020369	SMG6	100	73.194	ENSAMEG00000007632	SMG6	100	72.639	Ailuropoda_melanoleuca
ENSCPBG00000020369	SMG6	72	59.963	ENSACIG00000012997	smg6	71	60.166	Amphilophus_citrinellus
ENSCPBG00000020369	SMG6	71	58.577	ENSAOCG00000002630	smg6	79	52.759	Amphiprion_ocellaris
ENSCPBG00000020369	SMG6	87	52.703	ENSAPEG00000019101	smg6	78	53.165	Amphiprion_percula
ENSCPBG00000020369	SMG6	98	53.782	ENSATEG00000006483	smg6	99	52.968	Anabas_testudineus
ENSCPBG00000020369	SMG6	87	61.466	ENSACAG00000011783	SMG6	99	62.166	Anolis_carolinensis
ENSCPBG00000020369	SMG6	100	73.024	ENSANAG00000035760	SMG6	100	72.399	Aotus_nancymaae
ENSCPBG00000020369	SMG6	87	58.974	ENSACLG00000005288	smg6	91	52.721	Astatotilapia_calliptera
ENSCPBG00000020369	SMG6	68	62.146	ENSAMXG00000017326	smg6	98	50.561	Astyanax_mexicanus
ENSCPBG00000020369	SMG6	100	73.574	ENSBTAG00000000267	SMG6	100	73.106	Bos_taurus
ENSCPBG00000020369	SMG6	100	72.689	ENSCJAG00000001820	SMG6	100	72.064	Callithrix_jacchus
ENSCPBG00000020369	SMG6	100	73.403	ENSCAFG00000019260	SMG6	100	72.847	Canis_familiaris
ENSCPBG00000020369	SMG6	100	73.403	ENSCAFG00020009770	SMG6	100	72.847	Canis_lupus_dingo
ENSCPBG00000020369	SMG6	100	72.740	ENSCHIG00000021998	SMG6	100	72.411	Capra_hircus
ENSCPBG00000020369	SMG6	100	72.330	ENSTSYG00000003406	SMG6	100	82.583	Carlito_syrichta
ENSCPBG00000020369	SMG6	89	72.683	ENSCAPG00000016197	SMG6	99	72.422	Cavia_aperea
ENSCPBG00000020369	SMG6	100	71.478	ENSCPOG00000014878	SMG6	98	79.828	Cavia_porcellus
ENSCPBG00000020369	SMG6	100	72.935	ENSCCAG00000035801	SMG6	100	72.361	Cebus_capucinus
ENSCPBG00000020369	SMG6	100	72.746	ENSCATG00000031956	SMG6	100	72.122	Cercocebus_atys
ENSCPBG00000020369	SMG6	100	72.765	ENSCLAG00000006748	SMG6	93	83.784	Chinchilla_lanigera
ENSCPBG00000020369	SMG6	100	72.885	ENSCSAG00000013800	SMG6	100	72.330	Chlorocebus_sabaeus
ENSCPBG00000020369	SMG6	98	72.289	ENSCANG00000031764	SMG6	100	81.996	Colobus_angolensis_palliatus
ENSCPBG00000020369	SMG6	55	63.885	ENSCGRG00001019595	Smg6	98	62.889	Cricetulus_griseus_chok1gshd
ENSCPBG00000020369	SMG6	98	67.070	ENSCGRG00000007782	Smg6	100	66.501	Cricetulus_griseus_crigri
ENSCPBG00000020369	SMG6	99	54.862	ENSCSEG00000012757	smg6	90	54.984	Cynoglossus_semilaevis
ENSCPBG00000020369	SMG6	71	56.833	ENSCVAG00000012789	smg6	99	53.490	Cyprinodon_variegatus
ENSCPBG00000020369	SMG6	100	53.538	ENSDARG00000100481	smg6	100	54.266	Danio_rerio
ENSCPBG00000020369	SMG6	100	72.891	ENSDNOG00000048283	SMG6	100	72.337	Dasypus_novemcinctus
ENSCPBG00000020369	SMG6	100	69.508	ENSDORG00000016614	Smg6	94	84.234	Dipodomys_ordii
ENSCPBG00000020369	SMG6	93	90.476	ENSETEG00000016790	SMG6	93	90.476	Echinops_telfairi
ENSCPBG00000020369	SMG6	69	51.461	ENSEBUG00000005059	smg6	64	51.461	Eptatretus_burgeri
ENSCPBG00000020369	SMG6	99	73.765	ENSEASG00005009318	SMG6	99	73.208	Equus_asinus_asinus
ENSCPBG00000020369	SMG6	99	73.556	ENSECAG00000006519	SMG6	99	72.999	Equus_caballus
ENSCPBG00000020369	SMG6	100	62.935	ENSEEUG00000003493	SMG6	100	62.500	Erinaceus_europaeus
ENSCPBG00000020369	SMG6	71	60.556	ENSELUG00000005934	smg6	71	55.356	Esox_lucius
ENSCPBG00000020369	SMG6	100	73.264	ENSFCAG00000028817	SMG6	100	72.708	Felis_catus
ENSCPBG00000020369	SMG6	98	82.843	ENSFALG00000006538	SMG6	100	83.202	Ficedula_albicollis
ENSCPBG00000020369	SMG6	100	72.917	ENSFDAG00000015106	SMG6	100	77.143	Fukomys_damarensis
ENSCPBG00000020369	SMG6	100	51.664	ENSFHEG00000013282	smg6	93	52.006	Fundulus_heteroclitus
ENSCPBG00000020369	SMG6	52	66.509	ENSGMOG00000019077	smg6	68	66.509	Gadus_morhua
ENSCPBG00000020369	SMG6	100	81.735	ENSGALG00000003108	SMG6	98	81.869	Gallus_gallus
ENSCPBG00000020369	SMG6	98	53.276	ENSGAFG00000000379	smg6	89	53.666	Gambusia_affinis
ENSCPBG00000020369	SMG6	89	53.453	ENSGACG00000020521	smg6	99	53.428	Gasterosteus_aculeatus
ENSCPBG00000020369	SMG6	98	96.477	ENSGAGG00000025617	SMG6	100	96.477	Gopherus_agassizii
ENSCPBG00000020369	SMG6	100	72.708	ENSGGOG00000017156	SMG6	100	72.083	Gorilla_gorilla
ENSCPBG00000020369	SMG6	87	59.012	ENSHBUG00000021311	smg6	87	55.326	Haplochromis_burtoni
ENSCPBG00000020369	SMG6	100	72.450	ENSHGLG00000012882	SMG6	94	82.960	Heterocephalus_glaber_female
ENSCPBG00000020369	SMG6	100	72.519	ENSHGLG00100017815	SMG6	94	82.960	Heterocephalus_glaber_male
ENSCPBG00000020369	SMG6	71	57.839	ENSHCOG00000008761	smg6	83	57.689	Hippocampus_comes
ENSCPBG00000020369	SMG6	95	54.688	ENSIPUG00000012493	smg6	87	55.000	Ictalurus_punctatus
ENSCPBG00000020369	SMG6	100	73.264	ENSSTOG00000028127	SMG6	94	84.305	Ictidomys_tridecemlineatus
ENSCPBG00000020369	SMG6	79	69.062	ENSJJAG00000015367	Smg6	95	67.121	Jaculus_jaculus
ENSCPBG00000020369	SMG6	82	53.900	ENSKMAG00000000279	smg6	75	54.346	Kryptolebias_marmoratus
ENSCPBG00000020369	SMG6	84	53.082	ENSLBEG00000002184	smg6	75	53.036	Labrus_bergylta
ENSCPBG00000020369	SMG6	56	57.416	ENSLACG00000000806	-	99	56.888	Latimeria_chalumnae
ENSCPBG00000020369	SMG6	72	65.201	ENSLOCG00000006448	smg6	99	54.810	Lepisosteus_oculatus
ENSCPBG00000020369	SMG6	100	72.708	ENSLAFG00000001261	SMG6	100	72.153	Loxodonta_africana
ENSCPBG00000020369	SMG6	100	72.954	ENSMFAG00000003394	SMG6	100	72.399	Macaca_fascicularis
ENSCPBG00000020369	SMG6	100	72.816	ENSMMUG00000023161	SMG6	100	72.261	Macaca_mulatta
ENSCPBG00000020369	SMG6	100	69.391	ENSMNEG00000044592	SMG6	100	68.837	Macaca_nemestrina
ENSCPBG00000020369	SMG6	93	82.707	ENSMLEG00000029353	SMG6	100	82.707	Mandrillus_leucophaeus
ENSCPBG00000020369	SMG6	96	54.793	ENSMAMG00000020119	smg6	86	55.027	Mastacembelus_armatus
ENSCPBG00000020369	SMG6	87	59.066	ENSMZEG00005024736	smg6	91	53.239	Maylandia_zebra
ENSCPBG00000020369	SMG6	72	77.488	ENSMGAG00000005401	-	97	78.164	Meleagris_gallopavo
ENSCPBG00000020369	SMG6	100	73.611	ENSMICG00000012913	SMG6	100	73.056	Microcebus_murinus
ENSCPBG00000020369	SMG6	84	54.236	ENSMMOG00000010883	smg6	79	54.553	Mola_mola
ENSCPBG00000020369	SMG6	100	73.677	ENSMODG00000010622	SMG6	100	73.050	Monodelphis_domestica
ENSCPBG00000020369	SMG6	83	53.282	ENSMALG00000001106	smg6	74	54.062	Monopterus_albus
ENSCPBG00000020369	SMG6	100	71.975	MGP_CAROLIEiJ_G0016729	Smg6	98	82.997	Mus_caroli
ENSCPBG00000020369	SMG6	100	71.975	ENSMUSG00000038290	Smg6	97	82.421	Mus_musculus
ENSCPBG00000020369	SMG6	100	71.419	MGP_PahariEiJ_G0017866	Smg6	98	81.556	Mus_pahari
ENSCPBG00000020369	SMG6	100	71.905	MGP_SPRETEiJ_G0017572	Smg6	98	82.709	Mus_spretus
ENSCPBG00000020369	SMG6	100	73.472	ENSMPUG00000013046	SMG6	100	72.917	Mustela_putorius_furo
ENSCPBG00000020369	SMG6	100	72.651	ENSMLUG00000005739	SMG6	100	72.095	Myotis_lucifugus
ENSCPBG00000020369	SMG6	98	72.656	ENSNGAG00000007287	Smg6	94	82.511	Nannospalax_galili
ENSCPBG00000020369	SMG6	71	59.187	ENSNBRG00000009511	smg6	100	48.127	Neolamprologus_brichardi
ENSCPBG00000020369	SMG6	98	72.760	ENSNLEG00000017171	SMG6	100	82.192	Nomascus_leucogenys
ENSCPBG00000020369	SMG6	98	70.747	ENSMEUG00000015804	SMG6	100	70.107	Notamacropus_eugenii
ENSCPBG00000020369	SMG6	62	77.828	ENSOPRG00000000579	SMG6	91	74.208	Ochotona_princeps
ENSCPBG00000020369	SMG6	100	65.651	ENSODEG00000008038	SMG6	100	65.097	Octodon_degus
ENSCPBG00000020369	SMG6	100	49.967	ENSONIG00000005594	smg6	100	50.696	Oreochromis_niloticus
ENSCPBG00000020369	SMG6	100	72.816	ENSOCUG00000013018	SMG6	100	72.349	Oryctolagus_cuniculus
ENSCPBG00000020369	SMG6	85	53.390	ENSORLG00000003317	smg6	76	53.297	Oryzias_latipes
ENSCPBG00000020369	SMG6	85	53.067	ENSORLG00020015343	smg6	76	53.333	Oryzias_latipes_hni
ENSCPBG00000020369	SMG6	85	52.995	ENSORLG00015020454	smg6	76	53.282	Oryzias_latipes_hsok
ENSCPBG00000020369	SMG6	82	53.034	ENSOMEG00000010838	smg6	80	52.496	Oryzias_melastigma
ENSCPBG00000020369	SMG6	100	72.784	ENSOGAG00000004483	SMG6	100	72.230	Otolemur_garnettii
ENSCPBG00000020369	SMG6	99	71.947	ENSOARG00000015076	SMG6	100	72.701	Ovis_aries
ENSCPBG00000020369	SMG6	100	72.708	ENSPPAG00000043296	SMG6	100	72.153	Pan_paniscus
ENSCPBG00000020369	SMG6	100	73.333	ENSPPRG00000014581	SMG6	100	72.778	Panthera_pardus
ENSCPBG00000020369	SMG6	97	73.504	ENSPTIG00000008925	SMG6	100	82.779	Panthera_tigris_altaica
ENSCPBG00000020369	SMG6	100	72.759	ENSPTRG00000008544	SMG6	100	82.192	Pan_troglodytes
ENSCPBG00000020369	SMG6	100	72.898	ENSPANG00000024588	SMG6	100	72.342	Papio_anubis
ENSCPBG00000020369	SMG6	89	91.515	ENSPSIG00000006660	SMG6	96	91.515	Pelodiscus_sinensis
ENSCPBG00000020369	SMG6	93	59.512	ENSPMGG00000000844	smg6	100	59.512	Periophthalmus_magnuspinnatus
ENSCPBG00000020369	SMG6	100	72.253	ENSPEMG00000020707	Smg6	98	80.786	Peromyscus_maniculatus_bairdii
ENSCPBG00000020369	SMG6	100	51.337	ENSPFOG00000012035	smg6	100	51.371	Poecilia_formosa
ENSCPBG00000020369	SMG6	84	53.591	ENSPLAG00000017660	smg6	76	53.544	Poecilia_latipinna
ENSCPBG00000020369	SMG6	84	53.379	ENSPMEG00000000258	smg6	76	53.846	Poecilia_mexicana
ENSCPBG00000020369	SMG6	98	54.102	ENSPREG00000010066	smg6	87	54.632	Poecilia_reticulata
ENSCPBG00000020369	SMG6	100	67.405	ENSPPYG00000007790	SMG6	100	66.782	Pongo_abelii
ENSCPBG00000020369	SMG6	96	84.634	ENSPCAG00000000552	SMG6	100	69.653	Procavia_capensis
ENSCPBG00000020369	SMG6	100	73.333	ENSPCOG00000020925	SMG6	100	72.778	Propithecus_coquereli
ENSCPBG00000020369	SMG6	83	74.286	ENSPVAG00000002159	SMG6	84	73.697	Pteropus_vampyrus
ENSCPBG00000020369	SMG6	100	46.811	ENSPNYG00000024151	smg6	100	48.311	Pundamilia_nyererei
ENSCPBG00000020369	SMG6	100	51.052	ENSPNAG00000015480	smg6	97	50.551	Pygocentrus_nattereri
ENSCPBG00000020369	SMG6	100	71.766	ENSRNOG00000003041	Smg6	97	82.709	Rattus_norvegicus
ENSCPBG00000020369	SMG6	100	72.488	ENSRBIG00000024746	SMG6	100	71.933	Rhinopithecus_bieti
ENSCPBG00000020369	SMG6	100	72.349	ENSRROG00000030423	SMG6	100	81.800	Rhinopithecus_roxellana
ENSCPBG00000020369	SMG6	100	73.056	ENSSBOG00000022518	SMG6	100	70.972	Saimiri_boliviensis_boliviensis
ENSCPBG00000020369	SMG6	98	73.882	ENSSHAG00000010045	SMG6	98	73.243	Sarcophilus_harrisii
ENSCPBG00000020369	SMG6	87	55.222	ENSSFOG00015005436	smg6	70	57.674	Scleropages_formosus
ENSCPBG00000020369	SMG6	99	53.938	ENSSMAG00000019777	smg6	77	54.089	Scophthalmus_maximus
ENSCPBG00000020369	SMG6	84	53.711	ENSSDUG00000016412	smg6	79	52.574	Seriola_dumerili
ENSCPBG00000020369	SMG6	79	53.902	ENSSLDG00000020747	smg6	77	54.325	Seriola_lalandi_dorsalis
ENSCPBG00000020369	SMG6	99	78.267	ENSSPUG00000007152	SMG6	99	78.701	Sphenodon_punctatus
ENSCPBG00000020369	SMG6	83	54.602	ENSSPAG00000015633	smg6	75	54.914	Stegastes_partitus
ENSCPBG00000020369	SMG6	100	73.106	ENSSSCG00000017826	SMG6	100	72.550	Sus_scrofa
ENSCPBG00000020369	SMG6	100	80.839	ENSTGUG00000005836	SMG6	100	81.049	Taeniopygia_guttata
ENSCPBG00000020369	SMG6	100	49.184	ENSTRUG00000000358	smg6	100	48.416	Takifugu_rubripes
ENSCPBG00000020369	SMG6	100	49.767	ENSTNIG00000016164	smg6	100	50.066	Tetraodon_nigroviridis
ENSCPBG00000020369	SMG6	100	69.611	ENSTBEG00000011424	SMG6	100	69.199	Tupaia_belangeri
ENSCPBG00000020369	SMG6	91	78.399	ENSTTRG00000001175	SMG6	91	78.399	Tursiops_truncatus
ENSCPBG00000020369	SMG6	100	73.181	ENSUAMG00000025152	SMG6	100	72.779	Ursus_americanus
ENSCPBG00000020369	SMG6	97	73.647	ENSUMAG00000009306	SMG6	100	73.077	Ursus_maritimus
ENSCPBG00000020369	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCPBG00000020369	SMG6	100	73.194	ENSVVUG00000021727	SMG6	100	72.639	Vulpes_vulpes
ENSCPBG00000020369	SMG6	98	58.531	ENSXETG00000023799	SMG6	100	58.897	Xenopus_tropicalis
ENSCPBG00000020369	SMG6	84	54.509	ENSXCOG00000009867	smg6	76	54.596	Xiphophorus_couchianus
ENSCPBG00000020369	SMG6	99	54.141	ENSXMAG00000010321	smg6	90	54.375	Xiphophorus_maculatus