EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000020409 (Gene tree)
Gene ID: 101946504
Gene Symbol: PRPF8
Alias: PRPC8|Prp8|RP13|SNRNP220|hPrp8
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 31972 bases
Position: chrKK082936.1:7690497-7722468
Accession: 17340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000028998	RRM_4	PF10598.9	4.4e-48	1	1
ENSCPBP00000028998	U5_2-snRNA_bdg	PF10597.9	8.6e-74	1	1
ENSCPBP00000028998	PRO8NT	PF08082.11	1.8e-86	1	1
ENSCPBP00000028998	U6-snRNA_bdg	PF10596.9	2.1e-89	1	1
ENSCPBP00000028998	PROCN	PF08083.11	1.1e-236	1	1
ENSCPBP00000028998	PRP8_domainIV	PF12134.8	4.9e-130	1	1
ENSCPBP00000028998	PROCT	PF08084.11	9.3e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000034130	PRPF8-201	7008	XM_005298287	ENSCPBP00000028998	2335 (aa)	XP_005298344	UPI000388ABBA

Gene Model

Click here to download ENSCPBG00000020409's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000020409's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000020409	PRPF8	100	99.529	ENSG00000174231	PRPF8	100	99.529	Homo_sapiens
ENSCPBG00000020409	PRPF8	100	97.776	ENSAPOG00000010079	prpf8	100	97.776	Acanthochromis_polyacanthus
ENSCPBG00000020409	PRPF8	100	99.529	ENSAMEG00000007940	PRPF8	100	99.529	Ailuropoda_melanoleuca
ENSCPBG00000020409	PRPF8	100	95.881	ENSACIG00000018280	prpf8	100	95.881	Amphilophus_citrinellus
ENSCPBG00000020409	PRPF8	100	97.776	ENSAOCG00000010725	prpf8	100	97.776	Amphiprion_ocellaris
ENSCPBG00000020409	PRPF8	100	97.776	ENSAPEG00000014397	prpf8	100	97.776	Amphiprion_percula
ENSCPBG00000020409	PRPF8	100	97.177	ENSATEG00000010062	prpf8	100	97.177	Anabas_testudineus
ENSCPBG00000020409	PRPF8	96	99.778	ENSAPLG00000010357	PRPF8	100	99.778	Anas_platyrhynchos
ENSCPBG00000020409	PRPF8	83	97.580	ENSACAG00000014784	PRPF8	99	97.580	Anolis_carolinensis
ENSCPBG00000020409	PRPF8	100	99.529	ENSANAG00000032629	PRPF8	100	99.529	Aotus_nancymaae
ENSCPBG00000020409	PRPF8	100	97.362	ENSACLG00000020858	prpf8	100	97.362	Astatotilapia_calliptera
ENSCPBG00000020409	PRPF8	100	97.816	ENSAMXG00000020291	prpf8	100	97.816	Astyanax_mexicanus
ENSCPBG00000020409	PRPF8	100	99.529	ENSBTAG00000011488	PRPF8	100	99.529	Bos_taurus
ENSCPBG00000020409	PRPF8	99	86.449	WBGene00004187	prp-8	99	86.535	Caenorhabditis_elegans
ENSCPBG00000020409	PRPF8	100	99.529	ENSCJAG00000001911	PRPF8	100	99.529	Callithrix_jacchus
ENSCPBG00000020409	PRPF8	100	99.529	ENSCAFG00000019221	PRPF8	100	99.529	Canis_familiaris
ENSCPBG00000020409	PRPF8	96	99.688	ENSCAFG00020009943	PRPF8	100	99.688	Canis_lupus_dingo
ENSCPBG00000020409	PRPF8	100	99.529	ENSCHIG00000017499	PRPF8	100	99.529	Capra_hircus
ENSCPBG00000020409	PRPF8	100	99.529	ENSTSYG00000014120	PRPF8	100	99.529	Carlito_syrichta
ENSCPBG00000020409	PRPF8	96	97.461	ENSCAPG00000009459	PRPF8	99	97.461	Cavia_aperea
ENSCPBG00000020409	PRPF8	100	99.529	ENSCPOG00000010379	PRPF8	100	99.529	Cavia_porcellus
ENSCPBG00000020409	PRPF8	100	99.529	ENSCCAG00000031983	-	100	99.529	Cebus_capucinus
ENSCPBG00000020409	PRPF8	100	99.529	ENSCATG00000038595	PRPF8	100	99.529	Cercocebus_atys
ENSCPBG00000020409	PRPF8	100	99.529	ENSCLAG00000004388	PRPF8	100	99.529	Chinchilla_lanigera
ENSCPBG00000020409	PRPF8	100	99.529	ENSCSAG00000013929	PRPF8	100	99.529	Chlorocebus_sabaeus
ENSCPBG00000020409	PRPF8	81	98.163	ENSCHOG00000008590	PRPF8	88	98.163	Choloepus_hoffmanni
ENSCPBG00000020409	PRPF8	99	92.993	ENSCSAVG00000007825	-	100	91.323	Ciona_savignyi
ENSCPBG00000020409	PRPF8	100	99.529	ENSCANG00000043088	PRPF8	100	99.529	Colobus_angolensis_palliatus
ENSCPBG00000020409	PRPF8	74	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSCPBG00000020409	PRPF8	100	97.691	ENSCSEG00000007905	prpf8	100	97.691	Cynoglossus_semilaevis
ENSCPBG00000020409	PRPF8	100	97.652	ENSDARG00000026180	prpf8	100	97.652	Danio_rerio
ENSCPBG00000020409	PRPF8	93	99.540	ENSDNOG00000018471	PRPF8	99	99.540	Dasypus_novemcinctus
ENSCPBG00000020409	PRPF8	84	98.793	ENSDORG00000006185	Prpf8	96	98.793	Dipodomys_ordii
ENSCPBG00000020409	PRPF8	99	91.538	FBgn0033688	Prp8	97	91.538	Drosophila_melanogaster
ENSCPBG00000020409	PRPF8	100	94.090	ENSETEG00000017592	PRPF8	100	94.090	Echinops_telfairi
ENSCPBG00000020409	PRPF8	99	93.720	ENSEBUG00000006548	prpf8	99	93.720	Eptatretus_burgeri
ENSCPBG00000020409	PRPF8	100	99.529	ENSEASG00005009514	PRPF8	100	99.529	Equus_asinus_asinus
ENSCPBG00000020409	PRPF8	97	99.692	ENSECAG00000021318	PRPF8	100	99.692	Equus_caballus
ENSCPBG00000020409	PRPF8	67	99.259	ENSEEUG00000012120	-	67	99.259	Erinaceus_europaeus
ENSCPBG00000020409	PRPF8	98	96.503	ENSELUG00000007120	prpf8	99	96.503	Esox_lucius
ENSCPBG00000020409	PRPF8	100	99.529	ENSFCAG00000006297	PRPF8	100	99.529	Felis_catus
ENSCPBG00000020409	PRPF8	100	99.829	ENSFALG00000006628	PRPF8	100	99.829	Ficedula_albicollis
ENSCPBG00000020409	PRPF8	100	99.529	ENSFDAG00000004711	PRPF8	100	99.529	Fukomys_damarensis
ENSCPBG00000020409	PRPF8	100	97.438	ENSFHEG00000021084	prpf8	100	97.438	Fundulus_heteroclitus
ENSCPBG00000020409	PRPF8	100	95.431	ENSGMOG00000002028	prpf8	99	95.431	Gadus_morhua
ENSCPBG00000020409	PRPF8	100	99.786	ENSGALG00000002943	PRPF8	100	99.786	Gallus_gallus
ENSCPBG00000020409	PRPF8	99	97.685	ENSGAFG00000010337	prpf8	99	97.685	Gambusia_affinis
ENSCPBG00000020409	PRPF8	100	97.645	ENSGACG00000008504	prpf8	100	97.645	Gasterosteus_aculeatus
ENSCPBG00000020409	PRPF8	100	99.914	ENSGAGG00000008350	PRPF8	100	99.914	Gopherus_agassizii
ENSCPBG00000020409	PRPF8	100	99.529	ENSGGOG00000005516	PRPF8	100	99.529	Gorilla_gorilla
ENSCPBG00000020409	PRPF8	100	97.773	ENSHBUG00000016192	prpf8	100	97.773	Haplochromis_burtoni
ENSCPBG00000020409	PRPF8	100	99.529	ENSHGLG00000012029	PRPF8	100	99.529	Heterocephalus_glaber_female
ENSCPBG00000020409	PRPF8	100	99.529	ENSHGLG00100016494	PRPF8	100	99.529	Heterocephalus_glaber_male
ENSCPBG00000020409	PRPF8	100	97.606	ENSHCOG00000016414	prpf8	100	97.606	Hippocampus_comes
ENSCPBG00000020409	PRPF8	100	97.648	ENSIPUG00000023230	prpf8	100	97.648	Ictalurus_punctatus
ENSCPBG00000020409	PRPF8	100	99.529	ENSSTOG00000005128	PRPF8	100	99.529	Ictidomys_tridecemlineatus
ENSCPBG00000020409	PRPF8	100	97.345	ENSJJAG00000021159	Prpf8	100	97.345	Jaculus_jaculus
ENSCPBG00000020409	PRPF8	99	97.936	ENSKMAG00000016118	prpf8	99	97.936	Kryptolebias_marmoratus
ENSCPBG00000020409	PRPF8	100	97.519	ENSLBEG00000026903	prpf8	100	97.519	Labrus_bergylta
ENSCPBG00000020409	PRPF8	95	96.072	ENSLACG00000010479	PRPF8	99	98.599	Latimeria_chalumnae
ENSCPBG00000020409	PRPF8	99	97.902	ENSLOCG00000005409	prpf8	99	97.902	Lepisosteus_oculatus
ENSCPBG00000020409	PRPF8	100	99.529	ENSLAFG00000015445	PRPF8	100	99.529	Loxodonta_africana
ENSCPBG00000020409	PRPF8	100	99.529	ENSMFAG00000039995	PRPF8	100	99.529	Macaca_fascicularis
ENSCPBG00000020409	PRPF8	100	99.529	ENSMMUG00000004820	PRPF8	100	99.529	Macaca_mulatta
ENSCPBG00000020409	PRPF8	100	99.529	ENSMNEG00000035713	PRPF8	100	99.529	Macaca_nemestrina
ENSCPBG00000020409	PRPF8	100	99.529	ENSMLEG00000037937	PRPF8	100	99.529	Mandrillus_leucophaeus
ENSCPBG00000020409	PRPF8	100	97.776	ENSMAMG00000008919	prpf8	100	97.776	Mastacembelus_armatus
ENSCPBG00000020409	PRPF8	100	97.362	ENSMZEG00005015073	prpf8	100	97.362	Maylandia_zebra
ENSCPBG00000020409	PRPF8	100	99.786	ENSMGAG00000004769	PRPF8	100	99.786	Meleagris_gallopavo
ENSCPBG00000020409	PRPF8	100	99.486	ENSMICG00000010320	PRPF8	100	99.486	Microcebus_murinus
ENSCPBG00000020409	PRPF8	100	99.486	ENSMOCG00000016838	Prpf8	100	99.486	Microtus_ochrogaster
ENSCPBG00000020409	PRPF8	100	97.263	ENSMMOG00000011887	prpf8	100	97.263	Mola_mola
ENSCPBG00000020409	PRPF8	100	99.529	ENSMODG00000010480	PRPF8	100	99.529	Monodelphis_domestica
ENSCPBG00000020409	PRPF8	97	97.621	ENSMALG00000003558	prpf8	100	97.621	Monopterus_albus
ENSCPBG00000020409	PRPF8	100	99.443	MGP_CAROLIEiJ_G0016740	Prpf8	100	99.443	Mus_caroli
ENSCPBG00000020409	PRPF8	100	99.443	ENSMUSG00000020850	Prpf8	100	99.443	Mus_musculus
ENSCPBG00000020409	PRPF8	100	99.400	MGP_PahariEiJ_G0017877	Prpf8	100	99.400	Mus_pahari
ENSCPBG00000020409	PRPF8	100	99.443	MGP_SPRETEiJ_G0017583	Prpf8	100	99.443	Mus_spretus
ENSCPBG00000020409	PRPF8	100	99.529	ENSMPUG00000013227	PRPF8	100	99.529	Mustela_putorius_furo
ENSCPBG00000020409	PRPF8	100	99.316	ENSMLUG00000002666	PRPF8	100	99.316	Myotis_lucifugus
ENSCPBG00000020409	PRPF8	100	97.730	ENSNGAG00000005305	Prpf8	100	97.730	Nannospalax_galili
ENSCPBG00000020409	PRPF8	100	97.404	ENSNBRG00000013127	prpf8	100	97.404	Neolamprologus_brichardi
ENSCPBG00000020409	PRPF8	97	97.445	ENSNLEG00000000897	PRPF8	98	97.445	Nomascus_leucogenys
ENSCPBG00000020409	PRPF8	99	97.870	ENSMEUG00000015999	PRPF8	100	97.870	Notamacropus_eugenii
ENSCPBG00000020409	PRPF8	100	97.987	ENSOPRG00000003102	PRPF8	100	97.987	Ochotona_princeps
ENSCPBG00000020409	PRPF8	100	99.529	ENSODEG00000008468	PRPF8	100	99.529	Octodon_degus
ENSCPBG00000020409	PRPF8	100	97.447	ENSONIG00000008153	prpf8	100	97.447	Oreochromis_niloticus
ENSCPBG00000020409	PRPF8	82	99.813	ENSOANG00000004250	PRPF8	97	99.813	Ornithorhynchus_anatinus
ENSCPBG00000020409	PRPF8	100	99.529	ENSOCUG00000000081	PRPF8	100	99.529	Oryctolagus_cuniculus
ENSCPBG00000020409	PRPF8	100	96.984	ENSORLG00000008036	prpf8	100	96.984	Oryzias_latipes
ENSCPBG00000020409	PRPF8	100	96.943	ENSORLG00020021070	prpf8	100	96.943	Oryzias_latipes_hni
ENSCPBG00000020409	PRPF8	100	96.984	ENSORLG00015002340	prpf8	100	96.984	Oryzias_latipes_hsok
ENSCPBG00000020409	PRPF8	100	95.497	ENSOMEG00000016866	prpf8	100	95.497	Oryzias_melastigma
ENSCPBG00000020409	PRPF8	100	99.401	ENSOARG00000013312	PRPF8	100	99.401	Ovis_aries
ENSCPBG00000020409	PRPF8	100	99.529	ENSPPAG00000042753	PRPF8	100	99.529	Pan_paniscus
ENSCPBG00000020409	PRPF8	100	99.529	ENSPPRG00000008746	PRPF8	100	99.529	Panthera_pardus
ENSCPBG00000020409	PRPF8	100	99.443	ENSPTIG00000019200	PRPF8	100	99.443	Panthera_tigris_altaica
ENSCPBG00000020409	PRPF8	100	99.529	ENSPTRG00000039576	PRPF8	100	99.529	Pan_troglodytes
ENSCPBG00000020409	PRPF8	99	99.696	ENSPANG00000024607	PRPF8	98	99.696	Papio_anubis
ENSCPBG00000020409	PRPF8	100	97.571	ENSPKIG00000011201	prpf8	100	97.571	Paramormyrops_kingsleyae
ENSCPBG00000020409	PRPF8	100	99.957	ENSPSIG00000013393	PRPF8	100	99.957	Pelodiscus_sinensis
ENSCPBG00000020409	PRPF8	100	99.486	ENSPEMG00000021699	Prpf8	100	99.486	Peromyscus_maniculatus_bairdii
ENSCPBG00000020409	PRPF8	96	93.808	ENSPMAG00000005438	prpf8	100	93.853	Petromyzon_marinus
ENSCPBG00000020409	PRPF8	100	99.529	ENSPCIG00000022603	PRPF8	100	99.688	Phascolarctos_cinereus
ENSCPBG00000020409	PRPF8	100	96.947	ENSPFOG00000007005	prpf8	100	96.947	Poecilia_formosa
ENSCPBG00000020409	PRPF8	100	96.403	ENSPLAG00000020777	prpf8	100	96.403	Poecilia_latipinna
ENSCPBG00000020409	PRPF8	100	96.947	ENSPMEG00000004051	prpf8	100	96.947	Poecilia_mexicana
ENSCPBG00000020409	PRPF8	100	97.816	ENSPREG00000021902	prpf8	100	97.816	Poecilia_reticulata
ENSCPBG00000020409	PRPF8	100	99.529	ENSPPYG00000007777	PRPF8	100	99.529	Pongo_abelii
ENSCPBG00000020409	PRPF8	90	99.010	ENSPCAG00000008938	PRPF8	90	99.010	Procavia_capensis
ENSCPBG00000020409	PRPF8	100	99.486	ENSPCOG00000015182	PRPF8	100	99.486	Propithecus_coquereli
ENSCPBG00000020409	PRPF8	93	99.390	ENSPVAG00000002134	PRPF8	93	99.390	Pteropus_vampyrus
ENSCPBG00000020409	PRPF8	100	97.773	ENSPNYG00000016356	prpf8	100	97.773	Pundamilia_nyererei
ENSCPBG00000020409	PRPF8	100	97.733	ENSPNAG00000009247	prpf8	100	97.733	Pygocentrus_nattereri
ENSCPBG00000020409	PRPF8	100	99.443	ENSRNOG00000003495	Prpf8	100	99.443	Rattus_norvegicus
ENSCPBG00000020409	PRPF8	100	99.529	ENSRBIG00000031219	PRPF8	100	99.529	Rhinopithecus_bieti
ENSCPBG00000020409	PRPF8	100	99.529	ENSRROG00000038014	PRPF8	100	99.529	Rhinopithecus_roxellana
ENSCPBG00000020409	PRPF8	99	62.473	YHR165C	PRP8	95	62.516	Saccharomyces_cerevisiae
ENSCPBG00000020409	PRPF8	100	99.529	ENSSBOG00000029717	PRPF8	100	99.529	Saimiri_boliviensis_boliviensis
ENSCPBG00000020409	PRPF8	100	99.486	ENSSHAG00000006167	PRPF8	100	99.486	Sarcophilus_harrisii
ENSCPBG00000020409	PRPF8	100	97.566	ENSSFOG00015013905	prpf8	100	97.566	Scleropages_formosus
ENSCPBG00000020409	PRPF8	100	97.562	ENSSMAG00000017736	prpf8	100	97.562	Scophthalmus_maximus
ENSCPBG00000020409	PRPF8	100	97.776	ENSSDUG00000003029	prpf8	100	97.776	Seriola_dumerili
ENSCPBG00000020409	PRPF8	68	98.874	ENSSLDG00000017096	prpf8	100	98.874	Seriola_lalandi_dorsalis
ENSCPBG00000020409	PRPF8	87	98.336	ENSSARG00000002892	PRPF8	87	98.336	Sorex_araneus
ENSCPBG00000020409	PRPF8	100	99.443	ENSSPUG00000007463	PRPF8	100	99.443	Sphenodon_punctatus
ENSCPBG00000020409	PRPF8	100	97.177	ENSSPAG00000015639	prpf8	100	97.177	Stegastes_partitus
ENSCPBG00000020409	PRPF8	100	99.529	ENSSSCG00000017817	PRPF8	100	99.529	Sus_scrofa
ENSCPBG00000020409	PRPF8	100	99.829	ENSTGUG00000005648	-	100	99.829	Taeniopygia_guttata
ENSCPBG00000020409	PRPF8	52	99.651	ENSTGUG00000015597	-	95	99.651	Taeniopygia_guttata
ENSCPBG00000020409	PRPF8	100	97.648	ENSTRUG00000015906	prpf8	100	97.648	Takifugu_rubripes
ENSCPBG00000020409	PRPF8	95	98.865	ENSTNIG00000003460	prpf8	99	98.865	Tetraodon_nigroviridis
ENSCPBG00000020409	PRPF8	93	99.728	ENSTBEG00000006431	PRPF8	93	99.728	Tupaia_belangeri
ENSCPBG00000020409	PRPF8	100	98.929	ENSTTRG00000006869	PRPF8	100	98.929	Tursiops_truncatus
ENSCPBG00000020409	PRPF8	54	99.206	ENSUAMG00000015644	-	96	99.206	Ursus_americanus
ENSCPBG00000020409	PRPF8	100	99.272	ENSUMAG00000009385	PRPF8	100	99.272	Ursus_maritimus
ENSCPBG00000020409	PRPF8	71	99.310	ENSVPAG00000006063	-	71	99.310	Vicugna_pacos
ENSCPBG00000020409	PRPF8	100	99.529	ENSVVUG00000021695	PRPF8	99	99.529	Vulpes_vulpes
ENSCPBG00000020409	PRPF8	100	98.673	ENSXETG00000022259	prpf8	100	98.673	Xenopus_tropicalis
ENSCPBG00000020409	PRPF8	100	97.438	ENSXCOG00000012775	prpf8	100	97.438	Xiphophorus_couchianus
ENSCPBG00000020409	PRPF8	100	97.481	ENSXMAG00000008505	prpf8	100	97.481	Xiphophorus_maculatus