EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCPBG00000020685 (Gene tree)
Gene ID
101944572
Gene Symbol
UPF3B
Alias
HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Chrysemys_picta_bellii
Status
putative
Strand
Plus strand
Length
8297 bases
Position
chrKK082937.1:125320-133616
Accession
20439
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCPBP00000029353Smg4_UPF3PF03467.152.1e-3911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCPBT00000034555UPF3B-2011374-ENSCPBP00000029353457 (aa)--
Gene Model
Click here to download ENSCPBG00000020685's gene model file
Pathways
Pathway IDPathway NameSource
cpic03013RNA transportKEGG
cpic03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000020685's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCPBG00000020685UPF3B9368.578ENSG00000125351UPF3B9966.109Homo_sapiens
ENSCPBG00000020685UPF3B8945.433ENSG00000169062UPF3A8744.056Homo_sapiens
ENSCPBG00000020685UPF3B9458.916ENSAPOG00000012775upf3b9460.181Acanthochromis_polyacanthus
ENSCPBG00000020685UPF3B9966.109ENSAMEG00000000163UPF3B9966.109Ailuropoda_melanoleuca
ENSCPBG00000020685UPF3B8647.188ENSAMEG00000004259UPF3A8746.173Ailuropoda_melanoleuca
ENSCPBG00000020685UPF3B9652.954ENSACIG00000013582upf3b9754.367Amphilophus_citrinellus
ENSCPBG00000020685UPF3B9357.955ENSAOCG00000000706upf3b9458.503Amphiprion_ocellaris
ENSCPBG00000020685UPF3B9358.957ENSAPEG00000005545upf3b9459.729Amphiprion_percula
ENSCPBG00000020685UPF3B9458.145ENSATEG00000018742upf3b9460.407Anabas_testudineus
ENSCPBG00000020685UPF3B8450.386ENSACAG00000001540UPF3A9247.815Anolis_carolinensis
ENSCPBG00000020685UPF3B10076.008ENSACAG00000003625UPF3B10076.645Anolis_carolinensis
ENSCPBG00000020685UPF3B9363.023ENSANAG00000025598-9961.017Aotus_nancymaae
ENSCPBG00000020685UPF3B9368.349ENSANAG00000021894-9968.498Aotus_nancymaae
ENSCPBG00000020685UPF3B8644.938ENSANAG00000021713UPF3A5056.612Aotus_nancymaae
ENSCPBG00000020685UPF3B5559.533ENSANAG00000033169-9558.397Aotus_nancymaae
ENSCPBG00000020685UPF3B9459.234ENSACLG00000001649upf3b9459.685Astatotilapia_calliptera
ENSCPBG00000020685UPF3B5570.656ENSAMXG00000000199upf3b8666.795Astyanax_mexicanus
ENSCPBG00000020685UPF3B6178.355ENSBTAG00000035615UPF3B9968.382Bos_taurus
ENSCPBG00000020685UPF3B8645.137ENSCJAG00000019102UPF3A5158.025Callithrix_jacchus
ENSCPBG00000020685UPF3B9367.890ENSCJAG00000004975UPF3B9371.782Callithrix_jacchus
ENSCPBG00000020685UPF3B8646.420ENSCAFG00000006504UPF3A5060.086Canis_familiaris
ENSCPBG00000020685UPF3B9168.384ENSCAFG00000018426UPF3B9965.598Canis_familiaris
ENSCPBG00000020685UPF3B9368.519ENSCAFG00020004074UPF3B9965.751Canis_lupus_dingo
ENSCPBG00000020685UPF3B9247.183ENSCHIG00000011454-9145.412Capra_hircus
ENSCPBG00000020685UPF3B9366.370ENSCHIG00000000247-9964.155Capra_hircus
ENSCPBG00000020685UPF3B9166.364ENSCHIG00000018011-9968.498Capra_hircus
ENSCPBG00000020685UPF3B9367.890ENSTSYG00000014690UPF3B9965.481Carlito_syrichta
ENSCPBG00000020685UPF3B8545.524ENSCCAG00000029813-6858.706Cebus_capucinus
ENSCPBG00000020685UPF3B8645.926ENSCCAG00000018406UPF3A8443.990Cebus_capucinus
ENSCPBG00000020685UPF3B8945.411ENSCATG00000029733UPF3A5456.202Cercocebus_atys
ENSCPBG00000020685UPF3B9368.578ENSCATG00000017506UPF3B9372.277Cercocebus_atys
ENSCPBG00000020685UPF3B9965.409ENSCLAG00000003260UPF3B9965.900Chinchilla_lanigera
ENSCPBG00000020685UPF3B8944.712ENSCSAG00000017388UPF3A5455.556Chlorocebus_sabaeus
ENSCPBG00000020685UPF3B9366.592ENSCSAG00000018348UPF3B9964.358Chlorocebus_sabaeus
ENSCPBG00000020685UPF3B6077.922ENSCANG00000029220UPF3B9963.370Colobus_angolensis_palliatus
ENSCPBG00000020685UPF3B6860.303ENSCGRG00001013643-9060.000Cricetulus_griseus_chok1gshd
ENSCPBG00000020685UPF3B9960.543ENSCGRG00001006858-9961.169Cricetulus_griseus_chok1gshd
ENSCPBG00000020685UPF3B9062.911ENSCGRG00000007627Upf3b9963.615Cricetulus_griseus_crigri
ENSCPBG00000020685UPF3B9356.236ENSCSEG00000002046upf3b9058.145Cynoglossus_semilaevis
ENSCPBG00000020685UPF3B9357.143ENSCVAG00000005030upf3b9557.823Cyprinodon_variegatus
ENSCPBG00000020685UPF3B9359.101ENSDARG00000000489upf3b9359.551Danio_rerio
ENSCPBG00000020685UPF3B7944.780ENSDNOG00000034391UPF3A5556.198Dasypus_novemcinctus
ENSCPBG00000020685UPF3B9963.265ENSDNOG00000008665UPF3B9963.265Dasypus_novemcinctus
ENSCPBG00000020685UPF3B9962.264ENSDORG00000006077Upf3b9963.312Dipodomys_ordii
ENSCPBG00000020685UPF3B9139.437ENSETEG00000010110UPF3A5046.091Echinops_telfairi
ENSCPBG00000020685UPF3B9370.093ENSEASG00005012919UPF3B9967.447Equus_asinus_asinus
ENSCPBG00000020685UPF3B8945.763ENSEASG00005021884UPF3A5158.506Equus_asinus_asinus
ENSCPBG00000020685UPF3B8945.763ENSECAG00000017141UPF3A5158.506Equus_caballus
ENSCPBG00000020685UPF3B9370.093ENSECAG00000016947UPF3B9967.447Equus_caballus
ENSCPBG00000020685UPF3B7260.882ENSELUG00000020389upf3b9357.081Esox_lucius
ENSCPBG00000020685UPF3B8648.507ENSFCAG00000014602UPF3A8247.487Felis_catus
ENSCPBG00000020685UPF3B9368.265ENSFCAG00000004388UPF3B9966.042Felis_catus
ENSCPBG00000020685UPF3B10076.832ENSFALG00000001569UPF3B10076.238Ficedula_albicollis
ENSCPBG00000020685UPF3B9964.854ENSFDAG00000018869UPF3B9964.854Fukomys_damarensis
ENSCPBG00000020685UPF3B9356.463ENSFHEG00000017895upf3b9356.916Fundulus_heteroclitus
ENSCPBG00000020685UPF3B9353.571ENSGMOG00000001621upf3b9355.034Gadus_morhua
ENSCPBG00000020685UPF3B10079.710ENSGALG00000008618UPF3B10080.873Gallus_gallus
ENSCPBG00000020685UPF3B9954.936ENSGAFG00000000829upf3b9457.596Gambusia_affinis
ENSCPBG00000020685UPF3B9258.219ENSGACG00000017435upf3b9457.658Gasterosteus_aculeatus
ENSCPBG00000020685UPF3B10092.934ENSGAGG00000001219UPF3B10092.934Gopherus_agassizii
ENSCPBG00000020685UPF3B9139.716ENSGGOG00000043074-8936.490Gorilla_gorilla
ENSCPBG00000020685UPF3B8945.192ENSGGOG00000015428UPF3A8743.823Gorilla_gorilla
ENSCPBG00000020685UPF3B9368.578ENSGGOG00000023995UPF3B9966.109Gorilla_gorilla
ENSCPBG00000020685UPF3B8839.706ENSGGOG00000041219-8936.829Gorilla_gorilla
ENSCPBG00000020685UPF3B9459.234ENSHBUG00000017393upf3b9459.685Haplochromis_burtoni
ENSCPBG00000020685UPF3B9965.272ENSHGLG00000019582-9965.272Heterocephalus_glaber_female
ENSCPBG00000020685UPF3B8362.404ENSHGLG00000011189-9462.051Heterocephalus_glaber_female
ENSCPBG00000020685UPF3B6149.650ENSHGLG00000001544UPF3A5753.909Heterocephalus_glaber_female
ENSCPBG00000020685UPF3B9962.971ENSHGLG00100002042-9962.971Heterocephalus_glaber_male
ENSCPBG00000020685UPF3B6149.650ENSHGLG00100013244UPF3A5753.909Heterocephalus_glaber_male
ENSCPBG00000020685UPF3B8362.916ENSHGLG00100001889-9462.051Heterocephalus_glaber_male
ENSCPBG00000020685UPF3B9360.091ENSHCOG00000017004upf3b9354.817Hippocampus_comes
ENSCPBG00000020685UPF3B9957.928ENSIPUG00000019249upf3b9957.082Ictalurus_punctatus
ENSCPBG00000020685UPF3B9964.570ENSSTOG00000001101UPF3B9964.780Ictidomys_tridecemlineatus
ENSCPBG00000020685UPF3B9962.422ENSJJAG00000000053Upf3b9962.422Jaculus_jaculus
ENSCPBG00000020685UPF3B9455.882ENSKMAG00000020300upf3b9457.466Kryptolebias_marmoratus
ENSCPBG00000020685UPF3B6360.333ENSLBEG00000028689upf3b6462.667Labrus_bergylta
ENSCPBG00000020685UPF3B9955.932ENSLACG00000008691UPF3B9956.780Latimeria_chalumnae
ENSCPBG00000020685UPF3B5869.565ENSLOCG00000015238upf3b9561.765Lepisosteus_oculatus
ENSCPBG00000020685UPF3B8849.879ENSLOCG00000002665upf3a5260.084Lepisosteus_oculatus
ENSCPBG00000020685UPF3B9368.119ENSLAFG00000001267UPF3B9965.618Loxodonta_africana
ENSCPBG00000020685UPF3B9368.349ENSMFAG00000045414UPF3B9372.277Macaca_fascicularis
ENSCPBG00000020685UPF3B8645.137ENSMMUG00000007449UPF3A5357.563Macaca_mulatta
ENSCPBG00000020685UPF3B9368.349ENSMMUG00000020222UPF3B9372.277Macaca_mulatta
ENSCPBG00000020685UPF3B9368.349ENSMNEG00000039794UPF3B9372.277Macaca_nemestrina
ENSCPBG00000020685UPF3B8845.074ENSMLEG00000014726UPF3A5360.090Mandrillus_leucophaeus
ENSCPBG00000020685UPF3B9368.578ENSMLEG00000010999UPF3B9372.277Mandrillus_leucophaeus
ENSCPBG00000020685UPF3B9459.009ENSMZEG00005007871upf3b9459.459Maylandia_zebra
ENSCPBG00000020685UPF3B8380.513ENSMGAG00000007728UPF3B9980.513Meleagris_gallopavo
ENSCPBG00000020685UPF3B9958.873ENSMAUG00000008705Upf3b9955.158Mesocricetus_auratus
ENSCPBG00000020685UPF3B6177.489ENSMICG00000001743UPF3B7772.772Microcebus_murinus
ENSCPBG00000020685UPF3B9960.000ENSMOCG00000017893Upf3b9960.000Microtus_ochrogaster
ENSCPBG00000020685UPF3B9358.050ENSMMOG00000004183upf3b9457.631Mola_mola
ENSCPBG00000020685UPF3B9173.611ENSMODG00000010232UPF3B9972.854Monodelphis_domestica
ENSCPBG00000020685UPF3B8946.988ENSMODG00000003159UPF3A9646.062Monodelphis_domestica
ENSCPBG00000020685UPF3B5767.897ENSMALG00000008042upf3b9458.520Monopterus_albus
ENSCPBG00000020685UPF3B9962.004MGP_CAROLIEiJ_G0032999Upf3b9961.587Mus_caroli
ENSCPBG00000020685UPF3B9960.960ENSMUSG00000036572Upf3b9961.587Mus_musculus
ENSCPBG00000020685UPF3B9962.213MGP_PahariEiJ_G0031543Upf3b9962.004Mus_pahari
ENSCPBG00000020685UPF3B9960.960MGP_SPRETEiJ_G0034152Upf3b9961.587Mus_spretus
ENSCPBG00000020685UPF3B8847.330ENSMPUG00000009139UPF3A5057.613Mustela_putorius_furo
ENSCPBG00000020685UPF3B9168.150ENSMPUG00000001531UPF3B9965.672Mustela_putorius_furo
ENSCPBG00000020685UPF3B9367.890ENSMLUG00000010821UPF3B9965.063Myotis_lucifugus
ENSCPBG00000020685UPF3B8547.870ENSMLUG00000015905UPF3A9347.250Myotis_lucifugus
ENSCPBG00000020685UPF3B5255.078ENSNGAG00000019314Upf3a5655.602Nannospalax_galili
ENSCPBG00000020685UPF3B9960.960ENSNGAG00000008231Upf3b9961.795Nannospalax_galili
ENSCPBG00000020685UPF3B9368.578ENSNLEG00000014897UPF3B9965.690Nomascus_leucogenys
ENSCPBG00000020685UPF3B8944.952ENSNLEG00000007563UPF3A8942.568Nomascus_leucogenys
ENSCPBG00000020685UPF3B6792.568ENSMEUG00000015615UPF3B7992.568Notamacropus_eugenii
ENSCPBG00000020685UPF3B9961.845ENSODEG00000002186-9961.845Octodon_degus
ENSCPBG00000020685UPF3B9360.135ENSONIG00000002536upf3b9458.969Oreochromis_niloticus
ENSCPBG00000020685UPF3B9168.287ENSOANG00000002594-10066.667Ornithorhynchus_anatinus
ENSCPBG00000020685UPF3B9963.061ENSOCUG00000010213UPF3B9963.061Oryctolagus_cuniculus
ENSCPBG00000020685UPF3B9246.744ENSORLG00000010911upf3a8644.598Oryzias_latipes
ENSCPBG00000020685UPF3B9457.658ENSORLG00000001026upf3b9456.463Oryzias_latipes
ENSCPBG00000020685UPF3B9243.880ENSORLG00020014317upf3a8542.558Oryzias_latipes_hni
ENSCPBG00000020685UPF3B9457.432ENSORLG00020003758upf3b9456.236Oryzias_latipes_hni
ENSCPBG00000020685UPF3B9457.079ENSORLG00015012954upf3b9455.882Oryzias_latipes_hsok
ENSCPBG00000020685UPF3B9454.831ENSOMEG00000014736upf3b9556.885Oryzias_melastigma
ENSCPBG00000020685UPF3B9964.854ENSOGAG00000004643-9964.854Otolemur_garnettii
ENSCPBG00000020685UPF3B9860.470ENSOGAG00000033003-9960.256Otolemur_garnettii
ENSCPBG00000020685UPF3B9365.929ENSOARG00000016051-9963.765Ovis_aries
ENSCPBG00000020685UPF3B8946.265ENSOARG00000009004UPF3A5056.379Ovis_aries
ENSCPBG00000020685UPF3B9253.380ENSOARG00000007869-9951.415Ovis_aries
ENSCPBG00000020685UPF3B8945.192ENSPPAG00000042267UPF3A8942.342Pan_paniscus
ENSCPBG00000020685UPF3B9368.578ENSPPAG00000040390UPF3B9966.109Pan_paniscus
ENSCPBG00000020685UPF3B8648.507ENSPPRG00000025062UPF3A8247.487Panthera_pardus
ENSCPBG00000020685UPF3B9369.037ENSPPRG00000023536UPF3B9966.318Panthera_pardus
ENSCPBG00000020685UPF3B9365.778ENSPTIG00000015264UPF3B9968.015Panthera_tigris_altaica
ENSCPBG00000020685UPF3B8838.519ENSPTRG00000041187-9137.019Pan_troglodytes
ENSCPBG00000020685UPF3B8838.177ENSPTRG00000041835-8936.650Pan_troglodytes
ENSCPBG00000020685UPF3B8945.192ENSPTRG00000006073UPF3A8942.342Pan_troglodytes
ENSCPBG00000020685UPF3B9368.578ENSPTRG00000022228UPF3B9966.109Pan_troglodytes
ENSCPBG00000020685UPF3B9368.578ENSPANG00000000900UPF3B9372.277Papio_anubis
ENSCPBG00000020685UPF3B9544.444ENSPANG00000004346UPF3A8942.472Papio_anubis
ENSCPBG00000020685UPF3B9956.745ENSPKIG00000019226upf3b9374.497Paramormyrops_kingsleyae
ENSCPBG00000020685UPF3B5590.458ENSPSIG00000005833UPF3B8690.535Pelodiscus_sinensis
ENSCPBG00000020685UPF3B5866.182ENSPMGG00000016067upf3b9569.288Periophthalmus_magnuspinnatus
ENSCPBG00000020685UPF3B9961.587ENSPEMG00000012352Upf3b9961.667Peromyscus_maniculatus_bairdii
ENSCPBG00000020685UPF3B8245.667ENSPCIG00000019590-6571.812Phascolarctos_cinereus
ENSCPBG00000020685UPF3B9175.414ENSPCIG00000028914UPF3B9174.424Phascolarctos_cinereus
ENSCPBG00000020685UPF3B9956.009ENSPLAG00000005105upf3b9458.730Poecilia_latipinna
ENSCPBG00000020685UPF3B9956.009ENSPLAG00000019922upf3b9458.730Poecilia_latipinna
ENSCPBG00000020685UPF3B9956.438ENSPMEG00000023532upf3b9459.184Poecilia_mexicana
ENSCPBG00000020685UPF3B5871.795ENSPMEG00000000836upf3a8344.630Poecilia_mexicana
ENSCPBG00000020685UPF3B8944.952ENSPPYG00000005536UPF3A8942.472Pongo_abelii
ENSCPBG00000020685UPF3B5877.586ENSPPYG00000020675-9568.248Pongo_abelii
ENSCPBG00000020685UPF3B9962.857ENSPCAG00000009464UPF3B9963.061Procavia_capensis
ENSCPBG00000020685UPF3B9367.890ENSPCOG00000021960UPF3B9968.132Propithecus_coquereli
ENSCPBG00000020685UPF3B7482.759ENSPVAG00000014075UPF3B7870.064Pteropus_vampyrus
ENSCPBG00000020685UPF3B8643.750ENSPVAG00000005656UPF3A8742.353Pteropus_vampyrus
ENSCPBG00000020685UPF3B9459.729ENSPNYG00000009846upf3b9460.181Pundamilia_nyererei
ENSCPBG00000020685UPF3B9360.850ENSPNAG00000021528upf3b9560.179Pygocentrus_nattereri
ENSCPBG00000020685UPF3B9960.460ENSRNOG00000039994Upf3b9961.088Rattus_norvegicus
ENSCPBG00000020685UPF3B8845.567ENSRBIG00000034007UPF3A5160.360Rhinopithecus_bieti
ENSCPBG00000020685UPF3B8366.067ENSRBIG00000037219UPF3B9966.237Rhinopithecus_bieti
ENSCPBG00000020685UPF3B8845.813ENSRROG00000012212UPF3A8343.842Rhinopithecus_roxellana
ENSCPBG00000020685UPF3B9368.578ENSRROG00000041031UPF3B9372.277Rhinopithecus_roxellana
ENSCPBG00000020685UPF3B9965.409ENSSBOG00000019740UPF3B9572.277Saimiri_boliviensis_boliviensis
ENSCPBG00000020685UPF3B7740.997ENSSBOG00000029989UPF3A8437.008Saimiri_boliviensis_boliviensis
ENSCPBG00000020685UPF3B10069.215ENSSHAG00000008634UPF3B10067.975Sarcophilus_harrisii
ENSCPBG00000020685UPF3B9460.860ENSSFOG00015005614upf3b9561.538Scleropages_formosus
ENSCPBG00000020685UPF3B9358.559ENSSMAG00000012913upf3b9259.368Scophthalmus_maximus
ENSCPBG00000020685UPF3B8644.750ENSSDUG00000009680upf3a5777.419Seriola_dumerili
ENSCPBG00000020685UPF3B9357.240ENSSDUG00000005682upf3b9458.559Seriola_dumerili
ENSCPBG00000020685UPF3B9357.466ENSSLDG00000003130upf3b9458.784Seriola_lalandi_dorsalis
ENSCPBG00000020685UPF3B9062.557ENSSARG00000004147UPF3B9963.182Sorex_araneus
ENSCPBG00000020685UPF3B10077.662ENSSPUG00000013082UPF3B10075.992Sphenodon_punctatus
ENSCPBG00000020685UPF3B9457.014ENSSPAG00000009989upf3b9458.597Stegastes_partitus
ENSCPBG00000020685UPF3B9368.578ENSSSCG00000012617UPF3B9965.900Sus_scrofa
ENSCPBG00000020685UPF3B8644.500ENSSSCG00000024679UPF3A5855.602Sus_scrofa
ENSCPBG00000020685UPF3B9182.517ENSTGUG00000003413UPF3B10082.517Taeniopygia_guttata
ENSCPBG00000020685UPF3B9356.364ENSTRUG00000010645upf3b9756.706Takifugu_rubripes
ENSCPBG00000020685UPF3B9349.885ENSTNIG00000015763upf3b9449.318Tetraodon_nigroviridis
ENSCPBG00000020685UPF3B7582.759ENSTBEG00000003229UPF3B8070.701Tupaia_belangeri
ENSCPBG00000020685UPF3B9964.842ENSUAMG00000024565UPF3B9965.823Ursus_americanus
ENSCPBG00000020685UPF3B9167.765ENSUMAG00000002150UPF3B9067.059Ursus_maritimus
ENSCPBG00000020685UPF3B8445.477ENSVPAG00000003525UPF3A5559.009Vicugna_pacos
ENSCPBG00000020685UPF3B8665.385ENSVPAG00000009971UPF3B9965.385Vicugna_pacos
ENSCPBG00000020685UPF3B8645.432ENSVVUG00000013538UPF3A5056.680Vulpes_vulpes
ENSCPBG00000020685UPF3B9368.750ENSVVUG00000011594UPF3B9372.139Vulpes_vulpes
ENSCPBG00000020685UPF3B9857.388ENSXETG00000007440upf3b8177.487Xenopus_tropicalis
ENSCPBG00000020685UPF3B9354.338ENSXCOG00000016586upf3b9371.034Xiphophorus_couchianus
ENSCPBG00000020685UPF3B9458.824ENSXMAG00000013680upf3b9458.050Xiphophorus_maculatus
ENSCPBG00000020685UPF3B5772.667ENSXMAG00000013452upf3a8246.000Xiphophorus_maculatus

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