EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000020859 (Gene tree)
Gene ID: 101948921
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 64993 bases
Position: chr1:75954936-76019928
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000029596	RRM_1	PF00076.22	3.7e-32	1	2
ENSCPBP00000029596	RRM_1	PF00076.22	3.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000034833	PSPC1-201	1572	-	ENSCPBP00000029596	523 (aa)	XP_005308949	UPI0003890CBB

Gene Model

Click here to download ENSCPBG00000020859's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000020859's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000020859	PSPC1	90	58.526	ENSCPBG00000018674	SFPQ	69	57.233
ENSCPBG00000020859	PSPC1	89	60.426	ENSCPBG00000016659	NONO	89	61.017

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000020859	PSPC1	89	94.218	ENSG00000121390	PSPC1	99	86.882	Homo_sapiens
ENSCPBG00000020859	PSPC1	90	68.712	ENSAPOG00000015946	pspc1	89	68.182	Acanthochromis_polyacanthus
ENSCPBG00000020859	PSPC1	99	88.031	ENSAMEG00000017420	PSPC1	99	86.692	Ailuropoda_melanoleuca
ENSCPBG00000020859	PSPC1	88	60.805	ENSACIG00000018695	pspc1	87	58.686	Amphilophus_citrinellus
ENSCPBG00000020859	PSPC1	90	67.828	ENSAOCG00000005279	pspc1	89	67.216	Amphiprion_ocellaris
ENSCPBG00000020859	PSPC1	90	68.476	ENSAPEG00000015927	pspc1	89	67.909	Amphiprion_percula
ENSCPBG00000020859	PSPC1	88	57.203	ENSATEG00000004878	pspc1	91	56.504	Anabas_testudineus
ENSCPBG00000020859	PSPC1	89	60.086	ENSAPLG00000003643	SFPQ	83	59.227	Anas_platyrhynchos
ENSCPBG00000020859	PSPC1	77	98.020	ENSAPLG00000006246	PSPC1	100	98.020	Anas_platyrhynchos
ENSCPBG00000020859	PSPC1	100	89.454	ENSACAG00000002093	PSPC1	100	88.827	Anolis_carolinensis
ENSCPBG00000020859	PSPC1	89	55.150	ENSACAG00000013307	-	67	56.009	Anolis_carolinensis
ENSCPBG00000020859	PSPC1	99	87.645	ENSANAG00000000059	PSPC1	99	86.502	Aotus_nancymaae
ENSCPBG00000020859	PSPC1	88	59.698	ENSACLG00000027220	pspc1	89	58.316	Astatotilapia_calliptera
ENSCPBG00000020859	PSPC1	99	66.914	ENSAMXG00000036881	pspc1	99	65.926	Astyanax_mexicanus
ENSCPBG00000020859	PSPC1	99	86.882	ENSBTAG00000003934	PSPC1	99	86.832	Bos_taurus
ENSCPBG00000020859	PSPC1	99	87.838	ENSCJAG00000004554	PSPC1	99	86.692	Callithrix_jacchus
ENSCPBG00000020859	PSPC1	99	87.838	ENSCAFG00020002009	PSPC1	99	86.692	Canis_lupus_dingo
ENSCPBG00000020859	PSPC1	99	86.882	ENSCHIG00000016708	PSPC1	99	86.832	Capra_hircus
ENSCPBG00000020859	PSPC1	80	83.452	ENSTSYG00000032882	PSPC1	93	81.517	Carlito_syrichta
ENSCPBG00000020859	PSPC1	99	86.882	ENSCPOG00000000395	PSPC1	99	87.262	Cavia_porcellus
ENSCPBG00000020859	PSPC1	99	87.645	ENSCCAG00000033498	PSPC1	99	86.502	Cebus_capucinus
ENSCPBG00000020859	PSPC1	89	94.004	ENSCATG00000036434	PSPC1	91	95.758	Cercocebus_atys
ENSCPBG00000020859	PSPC1	89	83.656	ENSCLAG00000005241	PSPC1	99	83.836	Chinchilla_lanigera
ENSCPBG00000020859	PSPC1	99	82.115	ENSCHOG00000008913	PSPC1	99	82.163	Choloepus_hoffmanni
ENSCPBG00000020859	PSPC1	59	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSCPBG00000020859	PSPC1	78	80.296	ENSCANG00000018948	PSPC1	87	96.198	Colobus_angolensis_palliatus
ENSCPBG00000020859	PSPC1	99	86.742	ENSCGRG00001018368	Pspc1	89	93.576	Cricetulus_griseus_chok1gshd
ENSCPBG00000020859	PSPC1	99	86.742	ENSCGRG00000011724	Pspc1	89	93.576	Cricetulus_griseus_crigri
ENSCPBG00000020859	PSPC1	91	64.151	ENSCVAG00000007679	-	90	63.017	Cyprinodon_variegatus
ENSCPBG00000020859	PSPC1	90	70.332	ENSDARG00000006621	pspc1	100	68.916	Danio_rerio
ENSCPBG00000020859	PSPC1	99	87.669	ENSDNOG00000011078	PSPC1	99	86.907	Dasypus_novemcinctus
ENSCPBG00000020859	PSPC1	99	83.554	ENSDORG00000016050	Pspc1	99	83.554	Dipodomys_ordii
ENSCPBG00000020859	PSPC1	55	97.030	ENSETEG00000000502	-	72	97.030	Echinops_telfairi
ENSCPBG00000020859	PSPC1	90	56.800	ENSEBUG00000003964	-	65	68.975	Eptatretus_burgeri
ENSCPBG00000020859	PSPC1	54	48.039	ENSEBUG00000010133	pspc1	72	50.909	Eptatretus_burgeri
ENSCPBG00000020859	PSPC1	99	87.619	ENSEASG00005000119	PSPC1	99	87.810	Equus_asinus_asinus
ENSCPBG00000020859	PSPC1	99	87.619	ENSECAG00000017286	PSPC1	99	87.810	Equus_caballus
ENSCPBG00000020859	PSPC1	72	81.967	ENSEEUG00000011288	-	72	81.967	Erinaceus_europaeus
ENSCPBG00000020859	PSPC1	99	66.174	ENSELUG00000003746	pspc1	94	71.100	Esox_lucius
ENSCPBG00000020859	PSPC1	99	87.287	ENSFCAG00000027841	PSPC1	99	86.882	Felis_catus
ENSCPBG00000020859	PSPC1	100	93.951	ENSFALG00000008750	PSPC1	100	93.951	Ficedula_albicollis
ENSCPBG00000020859	PSPC1	99	88.008	ENSFDAG00000002617	PSPC1	99	88.008	Fukomys_damarensis
ENSCPBG00000020859	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	86	65.665	Gadus_morhua
ENSCPBG00000020859	PSPC1	100	96.947	ENSGALG00000017142	PSPC1	100	96.947	Gallus_gallus
ENSCPBG00000020859	PSPC1	62	77.231	ENSGAFG00000006327	pspc1	67	77.231	Gambusia_affinis
ENSCPBG00000020859	PSPC1	88	64.946	ENSGACG00000014901	pspc1	94	71.429	Gasterosteus_aculeatus
ENSCPBG00000020859	PSPC1	100	99.809	ENSGAGG00000019164	PSPC1	100	99.809	Gopherus_agassizii
ENSCPBG00000020859	PSPC1	90	58.526	ENSGAGG00000017325	-	69	57.233	Gopherus_agassizii
ENSCPBG00000020859	PSPC1	89	94.004	ENSGGOG00000003414	PSPC1	99	86.692	Gorilla_gorilla
ENSCPBG00000020859	PSPC1	88	68.951	ENSHBUG00000001139	pspc1	87	68.522	Haplochromis_burtoni
ENSCPBG00000020859	PSPC1	99	86.882	ENSHGLG00000018811	PSPC1	99	86.882	Heterocephalus_glaber_female
ENSCPBG00000020859	PSPC1	66	87.069	ENSHGLG00100007962	PSPC1	89	97.603	Heterocephalus_glaber_male
ENSCPBG00000020859	PSPC1	72	70.419	ENSHCOG00000013251	pspc1	85	68.586	Hippocampus_comes
ENSCPBG00000020859	PSPC1	99	66.979	ENSIPUG00000013192	pspc1	99	66.419	Ictalurus_punctatus
ENSCPBG00000020859	PSPC1	99	86.767	ENSSTOG00000026833	PSPC1	99	87.146	Ictidomys_tridecemlineatus
ENSCPBG00000020859	PSPC1	99	86.364	ENSJJAG00000018334	Pspc1	99	86.364	Jaculus_jaculus
ENSCPBG00000020859	PSPC1	88	53.277	ENSKMAG00000013525	-	99	50.844	Kryptolebias_marmoratus
ENSCPBG00000020859	PSPC1	90	65.041	ENSLBEG00000004474	pspc1	75	70.913	Labrus_bergylta
ENSCPBG00000020859	PSPC1	99	79.771	ENSLACG00000010762	PSPC1	99	79.924	Latimeria_chalumnae
ENSCPBG00000020859	PSPC1	99	79.191	ENSLOCG00000010832	pspc1	99	78.227	Lepisosteus_oculatus
ENSCPBG00000020859	PSPC1	99	86.742	ENSLAFG00000010968	PSPC1	99	87.311	Loxodonta_africana
ENSCPBG00000020859	PSPC1	89	94.004	ENSMFAG00000032728	PSPC1	92	95.770	Macaca_fascicularis
ENSCPBG00000020859	PSPC1	89	94.004	ENSMMUG00000020262	PSPC1	99	86.692	Macaca_mulatta
ENSCPBG00000020859	PSPC1	89	94.004	ENSMNEG00000027401	PSPC1	99	86.692	Macaca_nemestrina
ENSCPBG00000020859	PSPC1	76	94.000	ENSMLEG00000039043	PSPC1	94	94.000	Mandrillus_leucophaeus
ENSCPBG00000020859	PSPC1	90	66.397	ENSMAMG00000004333	pspc1	82	69.180	Mastacembelus_armatus
ENSCPBG00000020859	PSPC1	88	59.698	ENSMZEG00005005726	pspc1	89	58.316	Maylandia_zebra
ENSCPBG00000020859	PSPC1	78	97.537	ENSMGAG00000015134	PSPC1	100	97.537	Meleagris_gallopavo
ENSCPBG00000020859	PSPC1	87	81.585	ENSMAUG00000021067	Pspc1	87	88.670	Mesocricetus_auratus
ENSCPBG00000020859	PSPC1	99	88.031	ENSMICG00000013970	PSPC1	99	86.907	Microcebus_murinus
ENSCPBG00000020859	PSPC1	99	87.066	ENSMOCG00000006060	Pspc1	99	86.857	Microtus_ochrogaster
ENSCPBG00000020859	PSPC1	90	44.000	ENSMMOG00000004352	pspc1	59	52.537	Mola_mola
ENSCPBG00000020859	PSPC1	82	94.186	ENSMODG00000008029	PSPC1	78	86.475	Monodelphis_domestica
ENSCPBG00000020859	PSPC1	88	68.094	ENSMALG00000008914	pspc1	89	66.876	Monopterus_albus
ENSCPBG00000020859	PSPC1	99	87.259	MGP_CAROLIEiJ_G0019341	Pspc1	99	87.048	Mus_caroli
ENSCPBG00000020859	PSPC1	99	87.452	ENSMUSG00000021938	Pspc1	99	87.238	Mus_musculus
ENSCPBG00000020859	PSPC1	99	87.259	MGP_PahariEiJ_G0030359	Pspc1	99	87.048	Mus_pahari
ENSCPBG00000020859	PSPC1	99	86.553	MGP_SPRETEiJ_G0020232	Pspc1	99	86.553	Mus_spretus
ENSCPBG00000020859	PSPC1	99	87.097	ENSMPUG00000013347	PSPC1	99	86.882	Mustela_putorius_furo
ENSCPBG00000020859	PSPC1	99	86.389	ENSMLUG00000017663	PSPC1	90	93.617	Myotis_lucifugus
ENSCPBG00000020859	PSPC1	99	87.838	ENSNGAG00000011271	Pspc1	99	86.174	Nannospalax_galili
ENSCPBG00000020859	PSPC1	62	68.519	ENSNBRG00000014059	pspc1	76	69.444	Neolamprologus_brichardi
ENSCPBG00000020859	PSPC1	89	94.218	ENSNLEG00000001294	PSPC1	89	94.218	Nomascus_leucogenys
ENSCPBG00000020859	PSPC1	74	96.000	ENSMEUG00000000476	PSPC1	83	80.077	Notamacropus_eugenii
ENSCPBG00000020859	PSPC1	99	76.236	ENSODEG00000007817	-	99	76.616	Octodon_degus
ENSCPBG00000020859	PSPC1	89	82.390	ENSODEG00000019012	-	99	78.212	Octodon_degus
ENSCPBG00000020859	PSPC1	88	69.444	ENSONIG00000012010	pspc1	87	67.296	Oreochromis_niloticus
ENSCPBG00000020859	PSPC1	76	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSCPBG00000020859	PSPC1	90	67.722	ENSOANG00000011381	-	94	66.667	Ornithorhynchus_anatinus
ENSCPBG00000020859	PSPC1	89	94.218	ENSOCUG00000006153	PSPC1	99	86.389	Oryctolagus_cuniculus
ENSCPBG00000020859	PSPC1	88	69.165	ENSORLG00000004232	-	87	65.756	Oryzias_latipes
ENSCPBG00000020859	PSPC1	90	68.842	ENSORLG00020000578	PSPC1	88	65.496	Oryzias_latipes_hni
ENSCPBG00000020859	PSPC1	90	68.842	ENSORLG00015017480	pspc1	88	65.289	Oryzias_latipes_hsok
ENSCPBG00000020859	PSPC1	99	88.077	ENSOGAG00000012643	PSPC1	99	87.452	Otolemur_garnettii
ENSCPBG00000020859	PSPC1	88	93.913	ENSOARG00000014163	PSPC1	95	91.522	Ovis_aries
ENSCPBG00000020859	PSPC1	90	87.234	ENSPPAG00000009836	PSPC1	93	96.353	Pan_paniscus
ENSCPBG00000020859	PSPC1	99	87.287	ENSPPRG00000008833	PSPC1	99	86.882	Panthera_pardus
ENSCPBG00000020859	PSPC1	76	94.250	ENSPTIG00000016917	PSPC1	84	94.250	Panthera_tigris_altaica
ENSCPBG00000020859	PSPC1	82	94.651	ENSPTRG00000005677	PSPC1	98	86.708	Pan_troglodytes
ENSCPBG00000020859	PSPC1	89	94.004	ENSPANG00000001992	PSPC1	91	95.770	Papio_anubis
ENSCPBG00000020859	PSPC1	81	77.700	ENSPKIG00000003578	pspc1	89	73.895	Paramormyrops_kingsleyae
ENSCPBG00000020859	PSPC1	100	94.857	ENSPSIG00000005168	PSPC1	100	96.000	Pelodiscus_sinensis
ENSCPBG00000020859	PSPC1	57	71.000	ENSPMGG00000015135	pspc1	82	71.141	Periophthalmus_magnuspinnatus
ENSCPBG00000020859	PSPC1	99	87.452	ENSPEMG00000015214	Pspc1	99	87.048	Peromyscus_maniculatus_bairdii
ENSCPBG00000020859	PSPC1	89	94.017	ENSPCIG00000017680	PSPC1	99	86.882	Phascolarctos_cinereus
ENSCPBG00000020859	PSPC1	88	68.153	ENSPFOG00000003362	pspc1	88	67.234	Poecilia_formosa
ENSCPBG00000020859	PSPC1	88	68.153	ENSPLAG00000011540	pspc1	87	67.234	Poecilia_latipinna
ENSCPBG00000020859	PSPC1	67	67.521	ENSPLAG00000004407	-	50	67.521	Poecilia_latipinna
ENSCPBG00000020859	PSPC1	88	67.728	ENSPMEG00000008322	pspc1	87	66.809	Poecilia_mexicana
ENSCPBG00000020859	PSPC1	67	67.521	ENSPMEG00000001025	-	50	67.521	Poecilia_mexicana
ENSCPBG00000020859	PSPC1	88	67.728	ENSPREG00000007786	pspc1	87	66.809	Poecilia_reticulata
ENSCPBG00000020859	PSPC1	89	93.991	ENSPPYG00000005186	PSPC1	99	86.832	Pongo_abelii
ENSCPBG00000020859	PSPC1	65	95.732	ENSPCAG00000008314	-	66	95.732	Procavia_capensis
ENSCPBG00000020859	PSPC1	89	89.293	ENSPCOG00000014364	PSPC1	99	82.420	Propithecus_coquereli
ENSCPBG00000020859	PSPC1	99	85.880	ENSPVAG00000005036	PSPC1	99	86.667	Pteropus_vampyrus
ENSCPBG00000020859	PSPC1	88	59.698	ENSPNYG00000008893	pspc1	89	58.316	Pundamilia_nyererei
ENSCPBG00000020859	PSPC1	99	67.170	ENSPNAG00000016511	pspc1	99	67.547	Pygocentrus_nattereri
ENSCPBG00000020859	PSPC1	99	85.985	ENSRNOG00000020782	Pspc1	99	86.857	Rattus_norvegicus
ENSCPBG00000020859	PSPC1	91	93.096	ENSRBIG00000036057	PSPC1	98	93.096	Rhinopithecus_bieti
ENSCPBG00000020859	PSPC1	91	93.096	ENSRROG00000036334	PSPC1	99	86.882	Rhinopithecus_roxellana
ENSCPBG00000020859	PSPC1	79	83.575	ENSSBOG00000028172	PSPC1	90	91.697	Saimiri_boliviensis_boliviensis
ENSCPBG00000020859	PSPC1	89	88.298	ENSSHAG00000004696	PSPC1	99	81.818	Sarcophilus_harrisii
ENSCPBG00000020859	PSPC1	81	76.995	ENSSFOG00015001395	pspc1	99	72.956	Scleropages_formosus
ENSCPBG00000020859	PSPC1	88	66.385	ENSSMAG00000001761	pspc1	82	75.455	Scophthalmus_maximus
ENSCPBG00000020859	PSPC1	88	68.016	ENSSDUG00000010651	pspc1	75	74.645	Seriola_dumerili
ENSCPBG00000020859	PSPC1	88	63.499	ENSSLDG00000004284	pspc1	86	60.554	Seriola_lalandi_dorsalis
ENSCPBG00000020859	PSPC1	89	87.152	ENSSARG00000000888	PSPC1	99	81.107	Sorex_araneus
ENSCPBG00000020859	PSPC1	89	54.140	ENSSPUG00000001136	-	53	61.517	Sphenodon_punctatus
ENSCPBG00000020859	PSPC1	99	83.206	ENSSPUG00000008550	PSPC1	99	83.588	Sphenodon_punctatus
ENSCPBG00000020859	PSPC1	90	67.203	ENSSPAG00000001921	pspc1	76	73.095	Stegastes_partitus
ENSCPBG00000020859	PSPC1	99	86.907	ENSSSCG00000009569	PSPC1	99	87.287	Sus_scrofa
ENSCPBG00000020859	PSPC1	89	99.143	ENSTGUG00000011295	PSPC1	100	99.143	Taeniopygia_guttata
ENSCPBG00000020859	PSPC1	89	62.869	ENSTRUG00000011335	pspc1	88	62.473	Takifugu_rubripes
ENSCPBG00000020859	PSPC1	88	64.454	ENSTNIG00000010358	pspc1	92	61.284	Tetraodon_nigroviridis
ENSCPBG00000020859	PSPC1	89	74.090	ENSTBEG00000002361	PSPC1	94	70.243	Tupaia_belangeri
ENSCPBG00000020859	PSPC1	99	87.238	ENSTTRG00000003343	PSPC1	99	87.238	Tursiops_truncatus
ENSCPBG00000020859	PSPC1	66	87.536	ENSUAMG00000012309	PSPC1	98	86.080	Ursus_americanus
ENSCPBG00000020859	PSPC1	89	94.004	ENSUMAG00000013993	PSPC1	96	94.004	Ursus_maritimus
ENSCPBG00000020859	PSPC1	76	94.250	ENSVPAG00000010029	PSPC1	100	94.250	Vicugna_pacos
ENSCPBG00000020859	PSPC1	99	87.838	ENSVVUG00000006414	PSPC1	99	86.692	Vulpes_vulpes
ENSCPBG00000020859	PSPC1	62	76.074	ENSXCOG00000017438	pspc1	77	76.074	Xiphophorus_couchianus
ENSCPBG00000020859	PSPC1	62	76.380	ENSXMAG00000007929	pspc1	77	76.380	Xiphophorus_maculatus