EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000020869 (Gene tree)
Gene ID: 101938169
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 7877 bases
Position: chrKK088234.1:8948433-8956309
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000029609	zf-CCCH	PF00642.24	9.2e-20	1	2
ENSCPBP00000029609	zf-CCCH	PF00642.24	9.2e-20	2	2
ENSCPBP00000029609	zf-CCHC	PF00098.23	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000034848	CPSF4-201	2182	-	ENSCPBP00000029609	216 (aa)	XP_008162949	UPI00046BF668

Gene Model

Click here to download ENSCPBG00000020869's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000020869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000020869	CPSF4	52	88.393	ENSCPBG00000010269	-	68	87.611

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000020869	CPSF4	100	95.833	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSCPBG00000020869	CPSF4	84	73.626	ENSAPOG00000004921	cpsf4	100	73.626	Acanthochromis_polyacanthus
ENSCPBG00000020869	CPSF4	100	95.370	ENSAMEG00000006252	CPSF4	80	95.370	Ailuropoda_melanoleuca
ENSCPBG00000020869	CPSF4	100	77.419	ENSACIG00000009248	cpsf4	78	74.654	Amphilophus_citrinellus
ENSCPBG00000020869	CPSF4	100	84.332	ENSAOCG00000019616	cpsf4	80	84.332	Amphiprion_ocellaris
ENSCPBG00000020869	CPSF4	100	84.332	ENSAPEG00000011679	cpsf4	80	84.332	Amphiprion_percula
ENSCPBG00000020869	CPSF4	100	83.105	ENSATEG00000007010	cpsf4	80	80.365	Anabas_testudineus
ENSCPBG00000020869	CPSF4	100	97.222	ENSACAG00000012941	CPSF4	72	97.222	Anolis_carolinensis
ENSCPBG00000020869	CPSF4	100	95.833	ENSANAG00000021360	CPSF4	80	95.833	Aotus_nancymaae
ENSCPBG00000020869	CPSF4	100	82.949	ENSACLG00000010374	cpsf4	80	82.949	Astatotilapia_calliptera
ENSCPBG00000020869	CPSF4	100	83.028	ENSAMXG00000031647	cpsf4	80	80.734	Astyanax_mexicanus
ENSCPBG00000020869	CPSF4	100	80.556	ENSBTAG00000002090	CPSF4	78	81.481	Bos_taurus
ENSCPBG00000020869	CPSF4	100	95.833	ENSCJAG00000015826	CPSF4	80	95.833	Callithrix_jacchus
ENSCPBG00000020869	CPSF4	100	95.370	ENSCAFG00000015036	CPSF4	80	95.370	Canis_familiaris
ENSCPBG00000020869	CPSF4	100	95.370	ENSCAFG00020014462	CPSF4	82	95.370	Canis_lupus_dingo
ENSCPBG00000020869	CPSF4	100	95.370	ENSCHIG00000014313	CPSF4	80	95.370	Capra_hircus
ENSCPBG00000020869	CPSF4	100	76.959	ENSTSYG00000014604	-	78	74.654	Carlito_syrichta
ENSCPBG00000020869	CPSF4	100	78.341	ENSTSYG00000008195	-	84	76.037	Carlito_syrichta
ENSCPBG00000020869	CPSF4	100	81.944	ENSTSYG00000005712	-	78	82.407	Carlito_syrichta
ENSCPBG00000020869	CPSF4	100	95.370	ENSCAPG00000013881	CPSF4	86	95.370	Cavia_aperea
ENSCPBG00000020869	CPSF4	100	81.481	ENSCPOG00000001783	CPSF4	78	81.944	Cavia_porcellus
ENSCPBG00000020869	CPSF4	100	95.833	ENSCCAG00000028291	CPSF4	80	95.833	Cebus_capucinus
ENSCPBG00000020869	CPSF4	100	95.833	ENSCATG00000038440	CPSF4	80	95.833	Cercocebus_atys
ENSCPBG00000020869	CPSF4	100	95.370	ENSCLAG00000007050	CPSF4	80	95.370	Chinchilla_lanigera
ENSCPBG00000020869	CPSF4	100	95.833	ENSCSAG00000017795	CPSF4	80	95.833	Chlorocebus_sabaeus
ENSCPBG00000020869	CPSF4	95	54.589	ENSCING00000021080	-	76	54.589	Ciona_intestinalis
ENSCPBG00000020869	CPSF4	95	51.965	ENSCSAVG00000011469	-	78	51.101	Ciona_savignyi
ENSCPBG00000020869	CPSF4	100	95.833	ENSCANG00000019384	CPSF4	80	95.833	Colobus_angolensis_palliatus
ENSCPBG00000020869	CPSF4	100	81.481	ENSCGRG00001024184	Cpsf4	78	81.944	Cricetulus_griseus_chok1gshd
ENSCPBG00000020869	CPSF4	100	95.370	ENSCGRG00000013892	Cpsf4	80	95.370	Cricetulus_griseus_crigri
ENSCPBG00000020869	CPSF4	100	83.410	ENSCSEG00000019055	cpsf4	80	81.106	Cynoglossus_semilaevis
ENSCPBG00000020869	CPSF4	100	82.949	ENSCVAG00000016528	cpsf4	80	82.949	Cyprinodon_variegatus
ENSCPBG00000020869	CPSF4	100	84.862	ENSDARG00000020217	cpsf4	80	84.862	Danio_rerio
ENSCPBG00000020869	CPSF4	100	95.833	ENSDNOG00000006344	CPSF4	80	95.833	Dasypus_novemcinctus
ENSCPBG00000020869	CPSF4	100	95.370	ENSDORG00000000742	Cpsf4	99	95.370	Dipodomys_ordii
ENSCPBG00000020869	CPSF4	99	55.144	FBgn0015621	Clp	80	55.932	Drosophila_melanogaster
ENSCPBG00000020869	CPSF4	62	100.000	ENSETEG00000002608	CPSF4	50	100.000	Echinops_telfairi
ENSCPBG00000020869	CPSF4	99	65.888	ENSEBUG00000012552	cpsf4	76	65.888	Eptatretus_burgeri
ENSCPBG00000020869	CPSF4	100	81.481	ENSEASG00005002487	CPSF4	78	81.944	Equus_asinus_asinus
ENSCPBG00000020869	CPSF4	100	95.370	ENSECAG00000007525	CPSF4	80	95.370	Equus_caballus
ENSCPBG00000020869	CPSF4	70	100.000	ENSEEUG00000002158	CPSF4	65	100.000	Erinaceus_europaeus
ENSCPBG00000020869	CPSF4	100	81.448	ENSELUG00000011481	cpsf4	81	79.638	Esox_lucius
ENSCPBG00000020869	CPSF4	100	95.370	ENSFCAG00000015070	CPSF4	80	95.370	Felis_catus
ENSCPBG00000020869	CPSF4	100	86.574	ENSFALG00000013799	CPSF4	78	86.574	Ficedula_albicollis
ENSCPBG00000020869	CPSF4	100	95.370	ENSFDAG00000014092	CPSF4	89	95.370	Fukomys_damarensis
ENSCPBG00000020869	CPSF4	100	82.028	ENSFHEG00000010880	cpsf4	80	82.028	Fundulus_heteroclitus
ENSCPBG00000020869	CPSF4	100	76.852	ENSGMOG00000002330	cpsf4	79	74.429	Gadus_morhua
ENSCPBG00000020869	CPSF4	100	85.648	ENSGALG00000004714	CPSF4	78	85.648	Gallus_gallus
ENSCPBG00000020869	CPSF4	85	38.542	ENSGALG00000004441	-	92	37.368	Gallus_gallus
ENSCPBG00000020869	CPSF4	100	82.028	ENSGAFG00000010580	cpsf4	80	82.028	Gambusia_affinis
ENSCPBG00000020869	CPSF4	100	78.341	ENSGACG00000007792	cpsf4	78	75.926	Gasterosteus_aculeatus
ENSCPBG00000020869	CPSF4	60	81.395	ENSGAGG00000020579	-	63	88.393	Gopherus_agassizii
ENSCPBG00000020869	CPSF4	100	100.000	ENSGAGG00000021835	CPSF4	80	100.000	Gopherus_agassizii
ENSCPBG00000020869	CPSF4	100	95.833	ENSGGOG00000015131	CPSF4	80	95.833	Gorilla_gorilla
ENSCPBG00000020869	CPSF4	100	82.949	ENSHBUG00000013699	cpsf4	80	82.949	Haplochromis_burtoni
ENSCPBG00000020869	CPSF4	100	94.037	ENSHGLG00000017150	CPSF4	80	94.037	Heterocephalus_glaber_female
ENSCPBG00000020869	CPSF4	57	54.032	ENSHGLG00100017302	-	69	43.981	Heterocephalus_glaber_male
ENSCPBG00000020869	CPSF4	99	93.981	ENSHGLG00100009215	-	93	93.981	Heterocephalus_glaber_male
ENSCPBG00000020869	CPSF4	100	78.802	ENSHCOG00000004397	cpsf4	80	78.802	Hippocampus_comes
ENSCPBG00000020869	CPSF4	100	83.945	ENSIPUG00000017147	cpsf4	80	83.945	Ictalurus_punctatus
ENSCPBG00000020869	CPSF4	100	95.370	ENSSTOG00000001688	CPSF4	80	95.370	Ictidomys_tridecemlineatus
ENSCPBG00000020869	CPSF4	100	95.370	ENSJJAG00000019426	Cpsf4	80	95.370	Jaculus_jaculus
ENSCPBG00000020869	CPSF4	100	82.110	ENSKMAG00000015642	cpsf4	80	82.110	Kryptolebias_marmoratus
ENSCPBG00000020869	CPSF4	100	58.986	ENSLACG00000018470	-	78	58.986	Latimeria_chalumnae
ENSCPBG00000020869	CPSF4	100	87.558	ENSLACG00000010938	CPSF4	80	87.558	Latimeria_chalumnae
ENSCPBG00000020869	CPSF4	100	88.889	ENSLOCG00000004814	cpsf4	80	88.889	Lepisosteus_oculatus
ENSCPBG00000020869	CPSF4	100	94.907	ENSLAFG00000000159	CPSF4	80	94.907	Loxodonta_africana
ENSCPBG00000020869	CPSF4	100	95.833	ENSMFAG00000001462	CPSF4	100	82.407	Macaca_fascicularis
ENSCPBG00000020869	CPSF4	100	95.833	ENSMMUG00000019191	CPSF4	80	95.833	Macaca_mulatta
ENSCPBG00000020869	CPSF4	100	95.833	ENSMNEG00000032306	CPSF4	80	95.833	Macaca_nemestrina
ENSCPBG00000020869	CPSF4	100	95.833	ENSMLEG00000034721	CPSF4	80	95.833	Mandrillus_leucophaeus
ENSCPBG00000020869	CPSF4	100	82.949	ENSMAMG00000006244	cpsf4	80	81.364	Mastacembelus_armatus
ENSCPBG00000020869	CPSF4	100	82.949	ENSMZEG00005007515	cpsf4	80	82.949	Maylandia_zebra
ENSCPBG00000020869	CPSF4	100	85.648	ENSMGAG00000004235	CPSF4	91	85.648	Meleagris_gallopavo
ENSCPBG00000020869	CPSF4	100	95.370	ENSMAUG00000021253	Cpsf4	80	95.370	Mesocricetus_auratus
ENSCPBG00000020869	CPSF4	100	95.370	ENSMICG00000017429	CPSF4	80	95.370	Microcebus_murinus
ENSCPBG00000020869	CPSF4	100	95.370	ENSMOCG00000014901	Cpsf4	80	95.370	Microtus_ochrogaster
ENSCPBG00000020869	CPSF4	100	83.410	ENSMMOG00000001813	cpsf4	67	97.321	Mola_mola
ENSCPBG00000020869	CPSF4	100	98.148	ENSMODG00000001367	CPSF4	80	98.148	Monodelphis_domestica
ENSCPBG00000020869	CPSF4	100	81.106	ENSMALG00000012611	cpsf4	85	78.341	Monopterus_albus
ENSCPBG00000020869	CPSF4	100	95.370	MGP_CAROLIEiJ_G0028012	Cpsf4	80	95.370	Mus_caroli
ENSCPBG00000020869	CPSF4	100	95.370	ENSMUSG00000029625	Cpsf4	80	95.370	Mus_musculus
ENSCPBG00000020869	CPSF4	100	95.370	MGP_PahariEiJ_G0024581	Cpsf4	80	95.370	Mus_pahari
ENSCPBG00000020869	CPSF4	100	95.370	MGP_SPRETEiJ_G0029013	Cpsf4	80	95.370	Mus_spretus
ENSCPBG00000020869	CPSF4	100	95.370	ENSMPUG00000016508	CPSF4	80	95.370	Mustela_putorius_furo
ENSCPBG00000020869	CPSF4	100	80.556	ENSMLUG00000010980	CPSF4	91	81.481	Myotis_lucifugus
ENSCPBG00000020869	CPSF4	100	95.370	ENSNGAG00000001567	Cpsf4	80	95.370	Nannospalax_galili
ENSCPBG00000020869	CPSF4	100	82.949	ENSNBRG00000003943	cpsf4	86	82.949	Neolamprologus_brichardi
ENSCPBG00000020869	CPSF4	100	92.130	ENSNLEG00000011074	CPSF4	80	92.130	Nomascus_leucogenys
ENSCPBG00000020869	CPSF4	100	98.148	ENSMEUG00000006955	CPSF4	80	98.148	Notamacropus_eugenii
ENSCPBG00000020869	CPSF4	100	95.370	ENSOPRG00000013663	CPSF4	80	95.370	Ochotona_princeps
ENSCPBG00000020869	CPSF4	98	75.943	ENSODEG00000018283	-	75	74.057	Octodon_degus
ENSCPBG00000020869	CPSF4	100	95.370	ENSODEG00000011181	-	80	95.370	Octodon_degus
ENSCPBG00000020869	CPSF4	100	70.833	ENSODEG00000009779	-	77	70.833	Octodon_degus
ENSCPBG00000020869	CPSF4	100	82.949	ENSONIG00000008495	cpsf4	80	82.949	Oreochromis_niloticus
ENSCPBG00000020869	CPSF4	100	96.296	ENSOANG00000007729	CPSF4	92	96.296	Ornithorhynchus_anatinus
ENSCPBG00000020869	CPSF4	100	54.464	ENSOANG00000009568	-	82	52.679	Ornithorhynchus_anatinus
ENSCPBG00000020869	CPSF4	100	95.833	ENSOCUG00000002437	CPSF4	56	95.833	Oryctolagus_cuniculus
ENSCPBG00000020869	CPSF4	100	82.407	ENSORLG00000022798	cpsf4	80	82.407	Oryzias_latipes
ENSCPBG00000020869	CPSF4	100	82.407	ENSORLG00020008548	cpsf4	80	82.407	Oryzias_latipes_hni
ENSCPBG00000020869	CPSF4	100	82.407	ENSORLG00015019575	cpsf4	80	82.407	Oryzias_latipes_hsok
ENSCPBG00000020869	CPSF4	100	81.019	ENSOMEG00000005176	cpsf4	80	81.019	Oryzias_melastigma
ENSCPBG00000020869	CPSF4	100	95.370	ENSOGAG00000010884	CPSF4	80	95.370	Otolemur_garnettii
ENSCPBG00000020869	CPSF4	98	85.185	ENSOARG00000018668	CPSF4	79	84.259	Ovis_aries
ENSCPBG00000020869	CPSF4	100	96.296	ENSPPAG00000043355	CPSF4	80	96.296	Pan_paniscus
ENSCPBG00000020869	CPSF4	100	95.370	ENSPPRG00000003134	CPSF4	80	95.370	Panthera_pardus
ENSCPBG00000020869	CPSF4	100	95.370	ENSPTIG00000005604	CPSF4	80	95.370	Panthera_tigris_altaica
ENSCPBG00000020869	CPSF4	100	96.296	ENSPTRG00000019453	CPSF4	80	96.296	Pan_troglodytes
ENSCPBG00000020869	CPSF4	100	95.833	ENSPANG00000023123	CPSF4	80	95.833	Papio_anubis
ENSCPBG00000020869	CPSF4	100	83.710	ENSPKIG00000014278	cpsf4	81	83.710	Paramormyrops_kingsleyae
ENSCPBG00000020869	CPSF4	100	99.537	ENSPSIG00000011229	CPSF4	100	99.537	Pelodiscus_sinensis
ENSCPBG00000020869	CPSF4	100	58.986	ENSPSIG00000018198	-	99	57.407	Pelodiscus_sinensis
ENSCPBG00000020869	CPSF4	100	76.852	ENSPMGG00000017735	cpsf4	80	74.074	Periophthalmus_magnuspinnatus
ENSCPBG00000020869	CPSF4	100	95.370	ENSPEMG00000004508	Cpsf4	80	95.370	Peromyscus_maniculatus_bairdii
ENSCPBG00000020869	CPSF4	100	98.148	ENSPCIG00000024776	CPSF4	80	98.148	Phascolarctos_cinereus
ENSCPBG00000020869	CPSF4	100	82.028	ENSPFOG00000014912	cpsf4	80	82.028	Poecilia_formosa
ENSCPBG00000020869	CPSF4	100	73.148	ENSPLAG00000009599	cpsf4	78	73.148	Poecilia_latipinna
ENSCPBG00000020869	CPSF4	100	82.028	ENSPMEG00000009790	cpsf4	80	82.028	Poecilia_mexicana
ENSCPBG00000020869	CPSF4	100	81.106	ENSPREG00000018166	cpsf4	80	77.315	Poecilia_reticulata
ENSCPBG00000020869	CPSF4	100	95.833	ENSPPYG00000017378	CPSF4	92	95.833	Pongo_abelii
ENSCPBG00000020869	CPSF4	100	94.907	ENSPCAG00000001892	CPSF4	80	94.907	Procavia_capensis
ENSCPBG00000020869	CPSF4	100	95.370	ENSPCOG00000012771	CPSF4	83	95.370	Propithecus_coquereli
ENSCPBG00000020869	CPSF4	100	95.370	ENSPVAG00000007531	CPSF4	80	95.370	Pteropus_vampyrus
ENSCPBG00000020869	CPSF4	100	82.949	ENSPNYG00000018559	cpsf4	80	82.949	Pundamilia_nyererei
ENSCPBG00000020869	CPSF4	100	84.793	ENSPNAG00000003736	cpsf4	80	84.793	Pygocentrus_nattereri
ENSCPBG00000020869	CPSF4	100	80.556	ENSRNOG00000000985	Cpsf4	78	81.481	Rattus_norvegicus
ENSCPBG00000020869	CPSF4	100	95.833	ENSRBIG00000033886	CPSF4	92	95.833	Rhinopithecus_bieti
ENSCPBG00000020869	CPSF4	100	84.722	ENSRROG00000040431	CPSF4	78	82.407	Rhinopithecus_roxellana
ENSCPBG00000020869	CPSF4	100	95.833	ENSSBOG00000020493	CPSF4	100	82.407	Saimiri_boliviensis_boliviensis
ENSCPBG00000020869	CPSF4	100	98.148	ENSSHAG00000011533	CPSF4	80	98.148	Sarcophilus_harrisii
ENSCPBG00000020869	CPSF4	100	85.202	ENSSFOG00015007883	cpsf4	81	86.099	Scleropages_formosus
ENSCPBG00000020869	CPSF4	100	77.315	ENSSMAG00000006374	cpsf4	78	75.000	Scophthalmus_maximus
ENSCPBG00000020869	CPSF4	100	82.488	ENSSDUG00000018887	cpsf4	80	79.724	Seriola_dumerili
ENSCPBG00000020869	CPSF4	100	82.488	ENSSLDG00000019078	cpsf4	80	80.184	Seriola_lalandi_dorsalis
ENSCPBG00000020869	CPSF4	100	95.370	ENSSARG00000012416	CPSF4	92	95.370	Sorex_araneus
ENSCPBG00000020869	CPSF4	95	55.610	ENSSPUG00000014803	-	73	55.610	Sphenodon_punctatus
ENSCPBG00000020869	CPSF4	100	96.296	ENSSPUG00000003549	CPSF4	80	96.296	Sphenodon_punctatus
ENSCPBG00000020869	CPSF4	100	77.778	ENSSPAG00000006174	cpsf4	78	74.537	Stegastes_partitus
ENSCPBG00000020869	CPSF4	100	84.259	ENSSSCG00000026896	CPSF4	78	81.944	Sus_scrofa
ENSCPBG00000020869	CPSF4	100	86.574	ENSTGUG00000007552	CPSF4	78	86.574	Taeniopygia_guttata
ENSCPBG00000020869	CPSF4	100	80.734	ENSTRUG00000024220	cpsf4	80	80.734	Takifugu_rubripes
ENSCPBG00000020869	CPSF4	100	79.817	ENSTNIG00000006265	cpsf4	80	81.651	Tetraodon_nigroviridis
ENSCPBG00000020869	CPSF4	100	85.185	ENSTBEG00000011406	CPSF4	92	85.185	Tupaia_belangeri
ENSCPBG00000020869	CPSF4	100	71.759	ENSTTRG00000003007	CPSF4	80	71.759	Tursiops_truncatus
ENSCPBG00000020869	CPSF4	90	78.351	ENSUAMG00000008051	CPSF4	65	79.381	Ursus_americanus
ENSCPBG00000020869	CPSF4	100	80.556	ENSUMAG00000009474	CPSF4	78	81.481	Ursus_maritimus
ENSCPBG00000020869	CPSF4	100	81.019	ENSVVUG00000008824	CPSF4	78	81.481	Vulpes_vulpes
ENSCPBG00000020869	CPSF4	100	89.381	ENSXETG00000009892	cpsf4	81	89.381	Xenopus_tropicalis
ENSCPBG00000020869	CPSF4	98	61.215	ENSXETG00000004641	cpsf4l	79	61.215	Xenopus_tropicalis
ENSCPBG00000020869	CPSF4	100	82.028	ENSXCOG00000016040	cpsf4	80	82.028	Xiphophorus_couchianus
ENSCPBG00000020869	CPSF4	100	82.028	ENSXMAG00000024670	cpsf4	80	82.028	Xiphophorus_maculatus