EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000021518 (Gene tree)
Gene ID: 101944773
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 13674 bases
Position: chrKK083028.1:999473-1013146
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000030562	RRM_1	PF00076.22	9.3e-35	1	2
ENSCPBP00000030562	RRM_1	PF00076.22	9.3e-35	2	2
ENSCPBP00000030562	RRM_3	PF08777.11	5.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000035980	-	789	-	ENSCPBP00000030562	256 (aa)	XP_005305967	UPI000388BEA1

Gene Model

Click here to download ENSCPBG00000021518's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG
cpic05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000021518's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000021518	-	70	71.667	ENSCPBG00000021653	SRSF5	67	71.667
ENSCPBG00000021518	-	66	39.773	ENSCPBG00000011340	SRSF9	72	40.449
ENSCPBG00000021518	-	69	64.481	ENSCPBG00000018200	SRSF6	53	65.385
ENSCPBG00000021518	-	65	45.029	ENSCPBG00000009851	-	67	42.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000021518	-	70	75.543	ENSAPOG00000017395	srsf5a	62	80.541	Acanthochromis_polyacanthus
ENSCPBG00000021518	-	70	77.660	ENSACIG00000011892	srsf5a	96	76.296	Amphilophus_citrinellus
ENSCPBG00000021518	-	70	77.596	ENSAOCG00000014967	srsf5a	62	80.978	Amphiprion_ocellaris
ENSCPBG00000021518	-	70	77.596	ENSAPEG00000009297	srsf5a	62	80.978	Amphiprion_percula
ENSCPBG00000021518	-	70	80.319	ENSATEG00000000198	srsf5a	65	80.319	Anabas_testudineus
ENSCPBG00000021518	-	89	86.087	ENSAPLG00000002469	-	89	85.652	Anas_platyrhynchos
ENSCPBG00000021518	-	70	87.151	ENSACAG00000029015	-	85	85.268	Anolis_carolinensis
ENSCPBG00000021518	-	70	75.000	ENSACLG00000027166	srsf5a	65	76.562	Astatotilapia_calliptera
ENSCPBG00000021518	-	70	80.645	ENSAMXG00000030476	srsf5a	67	81.183	Astyanax_mexicanus
ENSCPBG00000021518	-	70	55.051	ENSCSAVG00000011376	-	78	55.838	Ciona_savignyi
ENSCPBG00000021518	-	70	77.320	ENSCSEG00000008109	srsf5a	62	77.320	Cynoglossus_semilaevis
ENSCPBG00000021518	-	95	65.769	ENSCVAG00000016982	srsf5a	97	68.148	Cyprinodon_variegatus
ENSCPBG00000021518	-	71	79.570	ENSDARG00000029818	srsf5a	100	78.195	Danio_rerio
ENSCPBG00000021518	-	70	76.166	ENSELUG00000020439	srsf5a	62	76.684	Esox_lucius
ENSCPBG00000021518	-	70	88.268	ENSFALG00000005098	-	90	76.494	Ficedula_albicollis
ENSCPBG00000021518	-	70	72.067	ENSFHEG00000003955	srsf5a	97	63.014	Fundulus_heteroclitus
ENSCPBG00000021518	-	70	77.095	ENSGMOG00000000869	srsf5a	94	79.888	Gadus_morhua
ENSCPBG00000021518	-	70	88.827	ENSGALG00000033259	SRSF5A	90	76.285	Gallus_gallus
ENSCPBG00000021518	-	70	71.508	ENSGAFG00000018237	srsf5a	54	71.508	Gambusia_affinis
ENSCPBG00000021518	-	70	81.006	ENSGACG00000011761	srsf5a	70	81.006	Gasterosteus_aculeatus
ENSCPBG00000021518	-	100	99.609	ENSGAGG00000007312	-	100	99.609	Gopherus_agassizii
ENSCPBG00000021518	-	70	75.393	ENSHBUG00000014048	srsf5a	64	76.963	Haplochromis_burtoni
ENSCPBG00000021518	-	70	78.075	ENSHCOG00000017557	srsf5a	62	78.610	Hippocampus_comes
ENSCPBG00000021518	-	99	69.149	ENSIPUG00000003439	srsf5a	69	78.010	Ictalurus_punctatus
ENSCPBG00000021518	-	70	71.277	ENSKMAG00000014937	srsf5a	58	72.105	Kryptolebias_marmoratus
ENSCPBG00000021518	-	70	74.872	ENSLBEG00000017153	srsf5a	74	74.872	Labrus_bergylta
ENSCPBG00000021518	-	88	81.938	ENSLACG00000017874	-	88	84.141	Latimeria_chalumnae
ENSCPBG00000021518	-	70	82.258	ENSLOCG00000014075	srsf5a	61	82.796	Lepisosteus_oculatus
ENSCPBG00000021518	-	70	81.868	ENSMAMG00000000192	srsf5a	65	81.868	Mastacembelus_armatus
ENSCPBG00000021518	-	70	75.393	ENSMZEG00005010485	srsf5a	64	76.963	Maylandia_zebra
ENSCPBG00000021518	-	89	79.098	ENSMGAG00000011888	-	96	86.957	Meleagris_gallopavo
ENSCPBG00000021518	-	70	81.215	ENSMMOG00000009793	srsf5a	61	82.320	Mola_mola
ENSCPBG00000021518	-	70	75.543	ENSMALG00000021194	srsf5a	63	74.457	Monopterus_albus
ENSCPBG00000021518	-	70	76.316	ENSNBRG00000000771	srsf5a	64	77.368	Neolamprologus_brichardi
ENSCPBG00000021518	-	70	76.316	ENSONIG00000019583	srsf5a	64	77.368	Oreochromis_niloticus
ENSCPBG00000021518	-	70	74.346	ENSORLG00000009268	srsf5a	67	79.235	Oryzias_latipes
ENSCPBG00000021518	-	70	74.346	ENSORLG00020003281	srsf5	67	79.235	Oryzias_latipes_hni
ENSCPBG00000021518	-	70	74.346	ENSORLG00015023075	srsf5	67	79.235	Oryzias_latipes_hsok
ENSCPBG00000021518	-	70	79.006	ENSOMEG00000000628	srsf5a	66	80.110	Oryzias_melastigma
ENSCPBG00000021518	-	70	80.749	ENSPKIG00000002054	srsf5a	68	81.283	Paramormyrops_kingsleyae
ENSCPBG00000021518	-	100	90.000	ENSPSIG00000008238	-	89	87.931	Pelodiscus_sinensis
ENSCPBG00000021518	-	71	76.882	ENSPMGG00000020125	srsf5a	70	65.678	Periophthalmus_magnuspinnatus
ENSCPBG00000021518	-	70	71.875	ENSPFOG00000022993	srsf5a	60	72.917	Poecilia_formosa
ENSCPBG00000021518	-	70	71.728	ENSPLAG00000005508	srsf5a	59	72.775	Poecilia_latipinna
ENSCPBG00000021518	-	70	71.875	ENSPMEG00000016339	srsf5a	60	72.917	Poecilia_mexicana
ENSCPBG00000021518	-	70	71.503	ENSPREG00000018091	srsf5a	61	72.539	Poecilia_reticulata
ENSCPBG00000021518	-	70	75.393	ENSPNYG00000021245	srsf5a	64	76.963	Pundamilia_nyererei
ENSCPBG00000021518	-	70	78.804	ENSPNAG00000021333	srsf5a	66	78.804	Pygocentrus_nattereri
ENSCPBG00000021518	-	70	80.749	ENSSFOG00015008377	srsf5	66	81.283	Scleropages_formosus
ENSCPBG00000021518	-	70	73.632	ENSSMAG00000010899	srsf5a	66	73.632	Scophthalmus_maximus
ENSCPBG00000021518	-	70	77.473	ENSSDUG00000006103	srsf5a	63	81.421	Seriola_dumerili
ENSCPBG00000021518	-	70	77.473	ENSSLDG00000004146	srsf5a	63	81.421	Seriola_lalandi_dorsalis
ENSCPBG00000021518	-	95	81.048	ENSSPUG00000002052	-	89	81.545	Sphenodon_punctatus
ENSCPBG00000021518	-	70	77.596	ENSSPAG00000002821	srsf5a	63	80.978	Stegastes_partitus
ENSCPBG00000021518	-	93	76.245	ENSTGUG00000011492	-	68	88.827	Taeniopygia_guttata
ENSCPBG00000021518	-	70	75.648	ENSTRUG00000022908	srsf5a	65	77.202	Takifugu_rubripes
ENSCPBG00000021518	-	100	77.444	ENSXETG00000017937	srsf5a	89	81.624	Xenopus_tropicalis
ENSCPBG00000021518	-	70	72.193	ENSXCOG00000015338	srsf5a	61	73.404	Xiphophorus_couchianus
ENSCPBG00000021518	-	70	71.134	ENSXMAG00000012823	srsf5a	61	72.165	Xiphophorus_maculatus