EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000021902 (Gene tree)
Gene ID: 101948208
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 41517 bases
Position: chrKK083112.1:1162177-1203693
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000031209	SF3b1	PF08920.10	4.8e-47	1	1
ENSCPBP00000031205	SF3b1	PF08920.10	5.2e-47	1	1
ENSCPBP00000031202	SF3b1	PF08920.10	5.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000036709	SF3B1-201	4441	XM_005294292	ENSCPBP00000031202	1301 (aa)	XP_005294349	UPI000388B48B
ENSCPBT00000036712	SF3B1-202	4759	-	ENSCPBP00000031205	1178 (aa)	-	-
ENSCPBT00000036716	SF3B1-203	3568	-	ENSCPBP00000031209	1123 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000021902's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000021902's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000021902	SF3B1	100	99.233	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSCPBG00000021902	SF3B1	99	94.857	ENSAPOG00000011894	sf3b1	100	93.612	Acanthochromis_polyacanthus
ENSCPBG00000021902	SF3B1	99	99.322	ENSAMEG00000013809	SF3B1	99	99.151	Ailuropoda_melanoleuca
ENSCPBG00000021902	SF3B1	99	94.341	ENSACIG00000020910	sf3b1	97	93.206	Amphilophus_citrinellus
ENSCPBG00000021902	SF3B1	99	94.786	ENSAOCG00000004478	sf3b1	100	93.612	Amphiprion_ocellaris
ENSCPBG00000021902	SF3B1	99	94.786	ENSAPEG00000012937	sf3b1	100	93.612	Amphiprion_percula
ENSCPBG00000021902	SF3B1	99	95.105	ENSATEG00000020435	sf3b1	100	93.988	Anabas_testudineus
ENSCPBG00000021902	SF3B1	100	99.660	ENSAPLG00000003993	SF3B1	99	99.536	Anas_platyrhynchos
ENSCPBG00000021902	SF3B1	100	99.321	ENSACAG00000009612	SF3B1	100	99.155	Anolis_carolinensis
ENSCPBG00000021902	SF3B1	100	99.233	ENSANAG00000021577	SF3B1	100	99.396	Aotus_nancymaae
ENSCPBG00000021902	SF3B1	99	94.192	ENSACLG00000023470	sf3b1	100	92.846	Astatotilapia_calliptera
ENSCPBG00000021902	SF3B1	99	95.122	ENSAMXG00000002219	sf3b1	100	94.068	Astyanax_mexicanus
ENSCPBG00000021902	SF3B1	100	99.156	ENSBTAG00000008915	SF3B1	100	99.156	Bos_taurus
ENSCPBG00000021902	SF3B1	99	70.008	WBGene00011605	sftb-1	98	66.616	Caenorhabditis_elegans
ENSCPBG00000021902	SF3B1	100	99.233	ENSCJAG00000003902	SF3B1	100	99.233	Callithrix_jacchus
ENSCPBG00000021902	SF3B1	100	99.233	ENSCAFG00000010826	SF3B1	100	99.233	Canis_familiaris
ENSCPBG00000021902	SF3B1	100	99.233	ENSCAFG00020004750	SF3B1	100	99.233	Canis_lupus_dingo
ENSCPBG00000021902	SF3B1	100	99.156	ENSCHIG00000015226	SF3B1	100	99.156	Capra_hircus
ENSCPBG00000021902	SF3B1	100	99.156	ENSTSYG00000009214	SF3B1	100	99.156	Carlito_syrichta
ENSCPBG00000021902	SF3B1	99	99.406	ENSCAPG00000006547	SF3B1	99	99.077	Cavia_aperea
ENSCPBG00000021902	SF3B1	99	99.406	ENSCPOG00000009353	SF3B1	100	99.227	Cavia_porcellus
ENSCPBG00000021902	SF3B1	100	99.233	ENSCCAG00000020506	SF3B1	100	99.233	Cebus_capucinus
ENSCPBG00000021902	SF3B1	100	99.233	ENSCATG00000035735	SF3B1	100	99.233	Cercocebus_atys
ENSCPBG00000021902	SF3B1	99	99.406	ENSCLAG00000014767	SF3B1	99	99.228	Chinchilla_lanigera
ENSCPBG00000021902	SF3B1	100	99.233	ENSCSAG00000011505	SF3B1	100	99.233	Chlorocebus_sabaeus
ENSCPBG00000021902	SF3B1	78	98.462	ENSCHOG00000009860	SF3B1	76	98.438	Choloepus_hoffmanni
ENSCPBG00000021902	SF3B1	79	78.280	ENSCING00000002558	-	99	78.865	Ciona_intestinalis
ENSCPBG00000021902	SF3B1	99	83.235	ENSCSAVG00000002559	-	99	79.606	Ciona_savignyi
ENSCPBG00000021902	SF3B1	100	99.233	ENSCANG00000029415	SF3B1	100	99.233	Colobus_angolensis_palliatus
ENSCPBG00000021902	SF3B1	100	99.233	ENSCGRG00001016990	Sf3b1	100	99.233	Cricetulus_griseus_chok1gshd
ENSCPBG00000021902	SF3B1	100	99.233	ENSCGRG00000005301	Sf3b1	100	99.233	Cricetulus_griseus_crigri
ENSCPBG00000021902	SF3B1	99	91.385	ENSCSEG00000003860	sf3b1	100	90.076	Cynoglossus_semilaevis
ENSCPBG00000021902	SF3B1	96	95.246	ENSCVAG00000003680	sf3b1	99	93.903	Cyprinodon_variegatus
ENSCPBG00000021902	SF3B1	99	95.034	ENSDARG00000056138	sf3b1	100	93.764	Danio_rerio
ENSCPBG00000021902	SF3B1	100	99.157	ENSDNOG00000011754	SF3B1	100	99.157	Dasypus_novemcinctus
ENSCPBG00000021902	SF3B1	99	99.406	ENSDORG00000002399	Sf3b1	100	96.677	Dipodomys_ordii
ENSCPBG00000021902	SF3B1	99	80.000	FBgn0031266	Sf3b1	100	76.583	Drosophila_melanogaster
ENSCPBG00000021902	SF3B1	96	98.516	ENSETEG00000009188	SF3B1	100	98.516	Echinops_telfairi
ENSCPBG00000021902	SF3B1	99	89.255	ENSEBUG00000004325	sf3b1	100	90.000	Eptatretus_burgeri
ENSCPBG00000021902	SF3B1	100	99.233	ENSEASG00005020159	SF3B1	98	99.233	Equus_asinus_asinus
ENSCPBG00000021902	SF3B1	100	99.233	ENSECAG00000021657	SF3B1	98	99.233	Equus_caballus
ENSCPBG00000021902	SF3B1	90	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSCPBG00000021902	SF3B1	100	92.976	ENSELUG00000005977	sf3b1	98	92.976	Esox_lucius
ENSCPBG00000021902	SF3B1	100	99.233	ENSFCAG00000005038	SF3B1	100	99.233	Felis_catus
ENSCPBG00000021902	SF3B1	100	99.576	ENSFALG00000004281	SF3B1	99	99.458	Ficedula_albicollis
ENSCPBG00000021902	SF3B1	100	99.233	ENSFDAG00000017510	SF3B1	100	99.233	Fukomys_damarensis
ENSCPBG00000021902	SF3B1	99	94.865	ENSFHEG00000014333	sf3b1	100	92.928	Fundulus_heteroclitus
ENSCPBG00000021902	SF3B1	99	94.937	ENSGMOG00000006773	sf3b1	100	93.750	Gadus_morhua
ENSCPBG00000021902	SF3B1	100	99.660	ENSGALG00000008038	SF3B1	100	99.539	Gallus_gallus
ENSCPBG00000021902	SF3B1	99	94.781	ENSGAFG00000000704	sf3b1	99	93.740	Gambusia_affinis
ENSCPBG00000021902	SF3B1	99	94.599	ENSGACG00000008839	sf3b1	100	93.674	Gasterosteus_aculeatus
ENSCPBG00000021902	SF3B1	100	100.000	ENSGAGG00000017478	SF3B1	100	99.313	Gopherus_agassizii
ENSCPBG00000021902	SF3B1	99	92.479	ENSGGOG00000009264	SF3B1	99	93.610	Gorilla_gorilla
ENSCPBG00000021902	SF3B1	99	94.266	ENSHBUG00000007705	sf3b1	99	92.912	Haplochromis_burtoni
ENSCPBG00000021902	SF3B1	99	99.406	ENSHGLG00000008285	-	99	99.228	Heterocephalus_glaber_female
ENSCPBG00000021902	SF3B1	98	98.909	ENSHGLG00100005535	-	99	97.220	Heterocephalus_glaber_male
ENSCPBG00000021902	SF3B1	99	94.561	ENSHCOG00000016775	sf3b1	100	93.041	Hippocampus_comes
ENSCPBG00000021902	SF3B1	99	95.286	ENSIPUG00000013171	sf3b1	100	94.140	Ictalurus_punctatus
ENSCPBG00000021902	SF3B1	100	99.233	ENSSTOG00000011034	SF3B1	100	99.233	Ictidomys_tridecemlineatus
ENSCPBG00000021902	SF3B1	99	99.321	ENSJJAG00000010903	Sf3b1	99	99.147	Jaculus_jaculus
ENSCPBG00000021902	SF3B1	99	94.211	ENSKMAG00000004009	sf3b1	100	93.096	Kryptolebias_marmoratus
ENSCPBG00000021902	SF3B1	99	95.262	ENSLBEG00000022208	sf3b1	100	93.807	Labrus_bergylta
ENSCPBG00000021902	SF3B1	99	93.272	ENSLACG00000014832	SF3B1	99	92.331	Latimeria_chalumnae
ENSCPBG00000021902	SF3B1	100	95.065	ENSLOCG00000003899	sf3b1	100	95.065	Lepisosteus_oculatus
ENSCPBG00000021902	SF3B1	100	99.233	ENSLAFG00000001956	SF3B1	100	99.233	Loxodonta_africana
ENSCPBG00000021902	SF3B1	99	99.406	ENSMMUG00000022430	SF3B1	99	99.228	Macaca_mulatta
ENSCPBG00000021902	SF3B1	100	99.233	ENSMNEG00000042333	SF3B1	100	99.396	Macaca_nemestrina
ENSCPBG00000021902	SF3B1	99	92.803	ENSMLEG00000026141	SF3B1	99	93.226	Mandrillus_leucophaeus
ENSCPBG00000021902	SF3B1	99	94.949	ENSMAMG00000010241	sf3b1	100	93.912	Mastacembelus_armatus
ENSCPBG00000021902	SF3B1	99	94.192	ENSMZEG00005021254	sf3b1	100	92.846	Maylandia_zebra
ENSCPBG00000021902	SF3B1	100	99.660	ENSMGAG00000007017	SF3B1	99	98.916	Meleagris_gallopavo
ENSCPBG00000021902	SF3B1	99	94.826	ENSMAUG00000009071	Sf3b1	99	94.981	Mesocricetus_auratus
ENSCPBG00000021902	SF3B1	100	99.156	ENSMICG00000013879	SF3B1	100	99.156	Microcebus_murinus
ENSCPBG00000021902	SF3B1	99	94.753	ENSMOCG00000000455	Sf3b1	99	94.753	Microtus_ochrogaster
ENSCPBG00000021902	SF3B1	97	93.321	ENSMMOG00000000475	sf3b1	100	93.321	Mola_mola
ENSCPBG00000021902	SF3B1	100	99.002	ENSMODG00000012275	SF3B1	100	99.002	Monodelphis_domestica
ENSCPBG00000021902	SF3B1	99	94.865	ENSMALG00000017211	sf3b1	100	93.836	Monopterus_albus
ENSCPBG00000021902	SF3B1	100	99.233	MGP_CAROLIEiJ_G0014141	Sf3b1	100	99.233	Mus_caroli
ENSCPBG00000021902	SF3B1	100	99.233	ENSMUSG00000025982	Sf3b1	100	99.233	Mus_musculus
ENSCPBG00000021902	SF3B1	100	99.233	MGP_SPRETEiJ_G0014947	Sf3b1	100	99.233	Mus_spretus
ENSCPBG00000021902	SF3B1	100	99.233	ENSMPUG00000007799	SF3B1	100	99.233	Mustela_putorius_furo
ENSCPBG00000021902	SF3B1	100	98.006	ENSMLUG00000000840	SF3B1	100	98.006	Myotis_lucifugus
ENSCPBG00000021902	SF3B1	99	99.406	ENSNGAG00000021884	-	100	98.923	Nannospalax_galili
ENSCPBG00000021902	SF3B1	99	94.208	ENSNBRG00000015816	sf3b1	100	89.092	Neolamprologus_brichardi
ENSCPBG00000021902	SF3B1	100	99.233	ENSNLEG00000006861	SF3B1	100	99.233	Nomascus_leucogenys
ENSCPBG00000021902	SF3B1	72	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSCPBG00000021902	SF3B1	99	87.479	ENSOPRG00000008596	SF3B1	100	86.105	Ochotona_princeps
ENSCPBG00000021902	SF3B1	100	99.233	ENSODEG00000011153	-	100	99.233	Octodon_degus
ENSCPBG00000021902	SF3B1	99	94.192	ENSONIG00000013758	sf3b1	100	92.846	Oreochromis_niloticus
ENSCPBG00000021902	SF3B1	92	98.708	ENSOCUG00000012722	-	96	98.708	Oryctolagus_cuniculus
ENSCPBG00000021902	SF3B1	99	94.781	ENSORLG00000020219	sf3b1	100	93.455	Oryzias_latipes
ENSCPBG00000021902	SF3B1	99	94.781	ENSORLG00020001746	sf3b1	100	93.455	Oryzias_latipes_hni
ENSCPBG00000021902	SF3B1	74	91.169	ENSORLG00015001759	sf3b1	98	91.169	Oryzias_latipes_hsok
ENSCPBG00000021902	SF3B1	99	94.781	ENSOMEG00000019231	sf3b1	100	93.612	Oryzias_melastigma
ENSCPBG00000021902	SF3B1	56	82.177	ENSOGAG00000000267	-	100	82.177	Otolemur_garnettii
ENSCPBG00000021902	SF3B1	100	99.156	ENSOARG00000015374	SF3B1	100	99.156	Ovis_aries
ENSCPBG00000021902	SF3B1	100	99.233	ENSPPAG00000035007	SF3B1	100	99.233	Pan_paniscus
ENSCPBG00000021902	SF3B1	100	99.233	ENSPPRG00000009090	SF3B1	100	99.233	Panthera_pardus
ENSCPBG00000021902	SF3B1	100	99.233	ENSPTIG00000021557	SF3B1	100	99.233	Panthera_tigris_altaica
ENSCPBG00000021902	SF3B1	99	90.608	ENSPTRG00000012771	SF3B1	99	90.762	Pan_troglodytes
ENSCPBG00000021902	SF3B1	100	99.233	ENSPANG00000013417	SF3B1	100	99.233	Papio_anubis
ENSCPBG00000021902	SF3B1	100	95.202	ENSPKIG00000000784	sf3b1	100	95.202	Paramormyrops_kingsleyae
ENSCPBG00000021902	SF3B1	100	98.387	ENSPSIG00000017222	SF3B1	98	98.528	Pelodiscus_sinensis
ENSCPBG00000021902	SF3B1	98	93.716	ENSPMGG00000004330	sf3b1	99	94.093	Periophthalmus_magnuspinnatus
ENSCPBG00000021902	SF3B1	99	99.406	ENSPEMG00000010699	Sf3b1	100	99.228	Peromyscus_maniculatus_bairdii
ENSCPBG00000021902	SF3B1	99	92.658	ENSPMAG00000001311	sf3b1	100	90.259	Petromyzon_marinus
ENSCPBG00000021902	SF3B1	100	98.926	ENSPCIG00000010642	SF3B1	100	98.926	Phascolarctos_cinereus
ENSCPBG00000021902	SF3B1	99	94.781	ENSPFOG00000000073	sf3b1	100	93.617	Poecilia_formosa
ENSCPBG00000021902	SF3B1	99	94.781	ENSPLAG00000002293	sf3b1	100	93.688	Poecilia_latipinna
ENSCPBG00000021902	SF3B1	99	94.781	ENSPMEG00000000446	sf3b1	98	93.688	Poecilia_mexicana
ENSCPBG00000021902	SF3B1	99	94.865	ENSPREG00000019652	sf3b1	100	93.764	Poecilia_reticulata
ENSCPBG00000021902	SF3B1	100	98.540	ENSPPYG00000013044	SF3B1	99	95.698	Pongo_abelii
ENSCPBG00000021902	SF3B1	100	99.080	ENSPCAG00000009292	SF3B1	100	99.080	Procavia_capensis
ENSCPBG00000021902	SF3B1	100	99.156	ENSPCOG00000024074	SF3B1	100	99.156	Propithecus_coquereli
ENSCPBG00000021902	SF3B1	100	99.233	ENSPVAG00000008302	SF3B1	100	99.233	Pteropus_vampyrus
ENSCPBG00000021902	SF3B1	99	94.192	ENSPNYG00000014939	sf3b1	100	92.770	Pundamilia_nyererei
ENSCPBG00000021902	SF3B1	100	94.068	ENSPNAG00000008288	sf3b1	100	94.068	Pygocentrus_nattereri
ENSCPBG00000021902	SF3B1	100	99.233	ENSRNOG00000013516	Sf3b1	100	99.233	Rattus_norvegicus
ENSCPBG00000021902	SF3B1	99	95.505	ENSRBIG00000026096	SF3B1	100	95.469	Rhinopithecus_bieti
ENSCPBG00000021902	SF3B1	100	99.233	ENSRROG00000031308	SF3B1	100	99.233	Rhinopithecus_roxellana
ENSCPBG00000021902	SF3B1	100	99.233	ENSSBOG00000020080	SF3B1	100	99.233	Saimiri_boliviensis_boliviensis
ENSCPBG00000021902	SF3B1	100	99.002	ENSSHAG00000017564	SF3B1	100	99.002	Sarcophilus_harrisii
ENSCPBG00000021902	SF3B1	100	94.905	ENSSFOG00015021535	sf3b1	100	95.057	Scleropages_formosus
ENSCPBG00000021902	SF3B1	99	94.542	ENSSMAG00000013977	sf3b1	99	93.171	Scophthalmus_maximus
ENSCPBG00000021902	SF3B1	99	94.949	ENSSDUG00000017422	sf3b1	100	93.683	Seriola_dumerili
ENSCPBG00000021902	SF3B1	99	94.865	ENSSLDG00000019495	sf3b1	100	93.607	Seriola_lalandi_dorsalis
ENSCPBG00000021902	SF3B1	79	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSCPBG00000021902	SF3B1	100	99.539	ENSSPUG00000000410	SF3B1	100	99.539	Sphenodon_punctatus
ENSCPBG00000021902	SF3B1	99	94.949	ENSSPAG00000010451	sf3b1	99	93.836	Stegastes_partitus
ENSCPBG00000021902	SF3B1	98	99.396	ENSSSCG00000016075	SF3B1	100	99.396	Sus_scrofa
ENSCPBG00000021902	SF3B1	100	99.576	ENSTGUG00000010553	SF3B1	100	99.462	Taeniopygia_guttata
ENSCPBG00000021902	SF3B1	99	94.865	ENSTRUG00000015534	sf3b1	100	93.760	Takifugu_rubripes
ENSCPBG00000021902	SF3B1	94	99.549	ENSTBEG00000008714	SF3B1	93	99.586	Tupaia_belangeri
ENSCPBG00000021902	SF3B1	91	97.917	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSCPBG00000021902	SF3B1	94	93.864	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSCPBG00000021902	SF3B1	100	99.233	ENSUMAG00000020945	SF3B1	100	99.233	Ursus_maritimus
ENSCPBG00000021902	SF3B1	96	96.847	ENSVPAG00000005798	SF3B1	96	96.847	Vicugna_pacos
ENSCPBG00000021902	SF3B1	100	99.233	ENSVVUG00000025948	SF3B1	95	99.233	Vulpes_vulpes
ENSCPBG00000021902	SF3B1	99	97.710	ENSXETG00000013339	sf3b1	100	96.626	Xenopus_tropicalis
ENSCPBG00000021902	SF3B1	100	90.276	ENSXCOG00000018086	sf3b1	100	90.160	Xiphophorus_couchianus
ENSCPBG00000021902	SF3B1	99	94.865	ENSXMAG00000007369	sf3b1	100	93.991	Xiphophorus_maculatus