EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000022571 (Gene tree)
Gene ID: 101935194
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 42736 bases
Position: chrKK083099.1:204663-247398
Accession: 30859
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000033023	ResIII	PF04851.15	1.2e-25	1	2
ENSCPBP00000033023	ResIII	PF04851.15	1.2e-25	2	2
ENSCPBP00000033029	ResIII	PF04851.15	2e-25	1	2
ENSCPBP00000033029	ResIII	PF04851.15	2e-25	2	2
ENSCPBP00000033048	ResIII	PF04851.15	9.2e-24	1	2
ENSCPBP00000033048	ResIII	PF04851.15	9.2e-24	2	2
ENSCPBP00000033032	ResIII	PF04851.15	1.7e-16	1	1
ENSCPBP00000033023	DEAD	PF00270.29	5.2e-52	1	2
ENSCPBP00000033023	DEAD	PF00270.29	5.2e-52	2	2
ENSCPBP00000033029	DEAD	PF00270.29	5.2e-52	1	2
ENSCPBP00000033029	DEAD	PF00270.29	5.2e-52	2	2
ENSCPBP00000033048	DEAD	PF00270.29	3.4e-49	1	2
ENSCPBP00000033048	DEAD	PF00270.29	3.4e-49	2	2
ENSCPBP00000033032	DEAD	PF00270.29	3.7e-36	1	2
ENSCPBP00000033032	DEAD	PF00270.29	3.7e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000038833	SNRNP200-202	6306	-	ENSCPBP00000033029	2101 (aa)	-	-
ENSCPBT00000038836	SNRNP200-203	6255	-	ENSCPBP00000033032	2084 (aa)	-	-
ENSCPBT00000038854	SNRNP200-205	1389	-	ENSCPBP00000033050	462 (aa)	-	-
ENSCPBT00000038852	SNRNP200-204	4686	-	ENSCPBP00000033048	1561 (aa)	-	-
ENSCPBT00000038825	SNRNP200-201	6420	XM_005279228	ENSCPBP00000033023	2139 (aa)	XP_005279285	-

Gene Model

Click here to download ENSCPBG00000022571's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000022571's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000022571	SNRNP200	95	46.637	ENSCPBG00000003881	ASCC3	80	45.014

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000022571	SNRNP200	100	97.756	ENSG00000144028	SNRNP200	100	97.756	Homo_sapiens
ENSCPBG00000022571	SNRNP200	99	95.000	ENSAPOG00000010223	snrnp200	99	90.743	Acanthochromis_polyacanthus
ENSCPBG00000022571	SNRNP200	100	97.803	ENSAMEG00000008996	SNRNP200	100	97.803	Ailuropoda_melanoleuca
ENSCPBG00000022571	SNRNP200	97	90.005	ENSACIG00000001764	snrnp200	98	90.005	Amphilophus_citrinellus
ENSCPBG00000022571	SNRNP200	99	95.000	ENSAOCG00000024593	snrnp200	100	89.898	Amphiprion_ocellaris
ENSCPBG00000022571	SNRNP200	97	89.952	ENSAPEG00000012554	snrnp200	100	89.952	Amphiprion_percula
ENSCPBG00000022571	SNRNP200	99	95.000	ENSATEG00000022522	snrnp200	99	90.603	Anabas_testudineus
ENSCPBG00000022571	SNRNP200	99	98.305	ENSAPLG00000004313	SNRNP200	100	98.305	Anas_platyrhynchos
ENSCPBG00000022571	SNRNP200	99	97.676	ENSACAG00000000434	SNRNP200	100	97.676	Anolis_carolinensis
ENSCPBG00000022571	SNRNP200	99	97.872	ENSANAG00000036625	SNRNP200	100	95.452	Aotus_nancymaae
ENSCPBG00000022571	SNRNP200	99	92.500	ENSACLG00000011188	snrnp200	99	90.416	Astatotilapia_calliptera
ENSCPBG00000022571	SNRNP200	99	92.500	ENSAMXG00000005684	snrnp200	99	90.229	Astyanax_mexicanus
ENSCPBG00000022571	SNRNP200	100	97.382	ENSBTAG00000000848	SNRNP200	100	97.382	Bos_taurus
ENSCPBG00000022571	SNRNP200	100	97.756	ENSCJAG00000007514	SNRNP200	100	97.756	Callithrix_jacchus
ENSCPBG00000022571	SNRNP200	100	97.018	ENSCAFG00020019979	SNRNP200	100	97.841	Canis_lupus_dingo
ENSCPBG00000022571	SNRNP200	100	97.569	ENSCHIG00000020611	SNRNP200	100	97.569	Capra_hircus
ENSCPBG00000022571	SNRNP200	100	97.803	ENSTSYG00000010467	SNRNP200	100	97.803	Carlito_syrichta
ENSCPBG00000022571	SNRNP200	99	97.872	ENSCAPG00000017234	SNRNP200	99	97.508	Cavia_aperea
ENSCPBG00000022571	SNRNP200	100	97.569	ENSCPOG00000006776	SNRNP200	100	97.569	Cavia_porcellus
ENSCPBG00000022571	SNRNP200	100	97.756	ENSCCAG00000033962	SNRNP200	100	97.756	Cebus_capucinus
ENSCPBG00000022571	SNRNP200	100	97.756	ENSCATG00000015790	SNRNP200	100	97.756	Cercocebus_atys
ENSCPBG00000022571	SNRNP200	100	97.569	ENSCLAG00000004116	SNRNP200	100	97.569	Chinchilla_lanigera
ENSCPBG00000022571	SNRNP200	100	97.709	ENSCSAG00000017369	SNRNP200	100	97.709	Chlorocebus_sabaeus
ENSCPBG00000022571	SNRNP200	77	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCPBG00000022571	SNRNP200	99	76.726	ENSCING00000005082	-	99	77.016	Ciona_intestinalis
ENSCPBG00000022571	SNRNP200	99	97.872	ENSCANG00000033932	SNRNP200	100	97.614	Colobus_angolensis_palliatus
ENSCPBG00000022571	SNRNP200	100	97.616	ENSCGRG00001022610	Snrnp200	100	97.616	Cricetulus_griseus_chok1gshd
ENSCPBG00000022571	SNRNP200	100	97.059	ENSCGRG00000016472	Snrnp200	100	97.059	Cricetulus_griseus_crigri
ENSCPBG00000022571	SNRNP200	100	89.621	ENSCSEG00000016399	snrnp200	100	89.621	Cynoglossus_semilaevis
ENSCPBG00000022571	SNRNP200	99	89.362	ENSCVAG00000017631	snrnp200	99	87.908	Cyprinodon_variegatus
ENSCPBG00000022571	SNRNP200	100	90.369	ENSDARG00000077536	snrnp200	99	90.369	Danio_rerio
ENSCPBG00000022571	SNRNP200	99	97.872	ENSDNOG00000011227	SNRNP200	100	96.353	Dasypus_novemcinctus
ENSCPBG00000022571	SNRNP200	99	97.872	ENSDORG00000005861	Snrnp200	100	95.312	Dipodomys_ordii
ENSCPBG00000022571	SNRNP200	100	74.338	FBgn0263599	l(3)72Ab	99	74.245	Drosophila_melanogaster
ENSCPBG00000022571	SNRNP200	95	98.191	ENSETEG00000000162	SNRNP200	74	98.191	Echinops_telfairi
ENSCPBG00000022571	SNRNP200	96	73.888	ENSEBUG00000016524	snrnp200	95	81.076	Eptatretus_burgeri
ENSCPBG00000022571	SNRNP200	99	97.872	ENSEASG00005001884	SNRNP200	100	96.695	Equus_asinus_asinus
ENSCPBG00000022571	SNRNP200	100	97.889	ENSECAG00000019675	SNRNP200	100	97.889	Equus_caballus
ENSCPBG00000022571	SNRNP200	91	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCPBG00000022571	SNRNP200	99	92.500	ENSELUG00000018948	snrnp200	99	90.697	Esox_lucius
ENSCPBG00000022571	SNRNP200	100	97.937	ENSFCAG00000010699	SNRNP200	100	97.937	Felis_catus
ENSCPBG00000022571	SNRNP200	97	89.362	ENSFALG00000001368	-	94	92.857	Ficedula_albicollis
ENSCPBG00000022571	SNRNP200	100	97.522	ENSFDAG00000004683	SNRNP200	100	97.522	Fukomys_damarensis
ENSCPBG00000022571	SNRNP200	100	90.307	ENSFHEG00000003786	snrnp200	99	90.307	Fundulus_heteroclitus
ENSCPBG00000022571	SNRNP200	100	89.734	ENSGMOG00000004881	snrnp200	99	89.687	Gadus_morhua
ENSCPBG00000022571	SNRNP200	100	90.451	ENSGAFG00000010807	snrnp200	99	90.451	Gambusia_affinis
ENSCPBG00000022571	SNRNP200	100	89.972	ENSGACG00000011474	snrnp200	99	89.879	Gasterosteus_aculeatus
ENSCPBG00000022571	SNRNP200	99	100.000	ENSGAGG00000016069	SNRNP200	100	100.000	Gopherus_agassizii
ENSCPBG00000022571	SNRNP200	100	97.756	ENSGGOG00000005174	SNRNP200	100	97.756	Gorilla_gorilla
ENSCPBG00000022571	SNRNP200	97	87.746	ENSHBUG00000011322	snrnp200	99	87.793	Haplochromis_burtoni
ENSCPBG00000022571	SNRNP200	100	97.616	ENSHGLG00000006654	SNRNP200	100	97.616	Heterocephalus_glaber_female
ENSCPBG00000022571	SNRNP200	100	97.616	ENSHGLG00100018594	SNRNP200	100	97.616	Heterocephalus_glaber_male
ENSCPBG00000022571	SNRNP200	100	97.756	ENSSTOG00000016351	SNRNP200	100	97.756	Ictidomys_tridecemlineatus
ENSCPBG00000022571	SNRNP200	100	97.616	ENSJJAG00000023659	Snrnp200	100	97.616	Jaculus_jaculus
ENSCPBG00000022571	SNRNP200	100	89.861	ENSKMAG00000003665	snrnp200	99	89.861	Kryptolebias_marmoratus
ENSCPBG00000022571	SNRNP200	100	90.369	ENSLBEG00000021585	snrnp200	99	90.369	Labrus_bergylta
ENSCPBG00000022571	SNRNP200	99	86.115	ENSLACG00000000226	SNRNP200	99	94.492	Latimeria_chalumnae
ENSCPBG00000022571	SNRNP200	100	92.052	ENSLOCG00000015198	snrnp200	99	92.052	Lepisosteus_oculatus
ENSCPBG00000022571	SNRNP200	100	97.522	ENSLAFG00000015626	SNRNP200	100	97.522	Loxodonta_africana
ENSCPBG00000022571	SNRNP200	100	97.709	ENSMFAG00000040174	SNRNP200	100	97.709	Macaca_fascicularis
ENSCPBG00000022571	SNRNP200	100	97.709	ENSMMUG00000023261	SNRNP200	100	97.709	Macaca_mulatta
ENSCPBG00000022571	SNRNP200	100	97.662	ENSMNEG00000032398	SNRNP200	100	97.662	Macaca_nemestrina
ENSCPBG00000022571	SNRNP200	100	97.756	ENSMLEG00000019083	SNRNP200	100	97.756	Mandrillus_leucophaeus
ENSCPBG00000022571	SNRNP200	100	90.047	ENSMAMG00000007851	snrnp200	99	90.000	Mastacembelus_armatus
ENSCPBG00000022571	SNRNP200	97	87.746	ENSMZEG00005010787	snrnp200	99	87.793	Maylandia_zebra
ENSCPBG00000022571	SNRNP200	97	97.874	ENSMGAG00000001831	SNRNP200	100	97.874	Meleagris_gallopavo
ENSCPBG00000022571	SNRNP200	100	97.662	ENSMAUG00000011825	Snrnp200	100	97.662	Mesocricetus_auratus
ENSCPBG00000022571	SNRNP200	100	97.803	ENSMICG00000004710	SNRNP200	100	97.803	Microcebus_murinus
ENSCPBG00000022571	SNRNP200	100	95.138	ENSMOCG00000011814	Snrnp200	100	95.138	Microtus_ochrogaster
ENSCPBG00000022571	SNRNP200	99	95.000	ENSMMOG00000014167	snrnp200	99	88.733	Mola_mola
ENSCPBG00000022571	SNRNP200	99	100.000	ENSMODG00000008475	SNRNP200	100	97.849	Monodelphis_domestica
ENSCPBG00000022571	SNRNP200	99	95.000	ENSMALG00000001973	snrnp200	99	90.603	Monopterus_albus
ENSCPBG00000022571	SNRNP200	100	97.475	MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.475	Mus_caroli
ENSCPBG00000022571	SNRNP200	100	97.522	ENSMUSG00000003660	Snrnp200	100	97.522	Mus_musculus
ENSCPBG00000022571	SNRNP200	100	97.569	MGP_PahariEiJ_G0025695	Snrnp200	100	97.569	Mus_pahari
ENSCPBG00000022571	SNRNP200	100	97.522	MGP_SPRETEiJ_G0025170	Snrnp200	100	97.522	Mus_spretus
ENSCPBG00000022571	SNRNP200	100	97.849	ENSMPUG00000008949	SNRNP200	100	97.849	Mustela_putorius_furo
ENSCPBG00000022571	SNRNP200	100	97.246	ENSMLUG00000010493	SNRNP200	100	97.246	Myotis_lucifugus
ENSCPBG00000022571	SNRNP200	100	93.735	ENSMLUG00000027511	-	100	93.735	Myotis_lucifugus
ENSCPBG00000022571	SNRNP200	100	97.756	ENSNGAG00000021993	Snrnp200	100	97.756	Nannospalax_galili
ENSCPBG00000022571	SNRNP200	91	90.487	ENSNBRG00000017960	snrnp200	98	90.272	Neolamprologus_brichardi
ENSCPBG00000022571	SNRNP200	99	95.745	ENSNLEG00000000025	SNRNP200	100	93.617	Nomascus_leucogenys
ENSCPBG00000022571	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCPBG00000022571	SNRNP200	99	97.872	ENSOPRG00000015464	SNRNP200	100	93.829	Ochotona_princeps
ENSCPBG00000022571	SNRNP200	100	97.616	ENSODEG00000008366	SNRNP200	100	97.616	Octodon_degus
ENSCPBG00000022571	SNRNP200	99	90.385	ENSONIG00000010714	snrnp200	99	90.323	Oreochromis_niloticus
ENSCPBG00000022571	SNRNP200	100	97.616	ENSOCUG00000009864	SNRNP200	100	97.616	Oryctolagus_cuniculus
ENSCPBG00000022571	SNRNP200	99	93.617	ENSORLG00000012286	snrnp200	100	90.369	Oryzias_latipes
ENSCPBG00000022571	SNRNP200	99	93.617	ENSORLG00020004648	snrnp200	100	90.416	Oryzias_latipes_hni
ENSCPBG00000022571	SNRNP200	99	93.617	ENSORLG00015019114	snrnp200	100	90.508	Oryzias_latipes_hsok
ENSCPBG00000022571	SNRNP200	99	95.000	ENSOMEG00000011834	snrnp200	99	90.510	Oryzias_melastigma
ENSCPBG00000022571	SNRNP200	100	97.803	ENSOGAG00000006879	SNRNP200	100	97.803	Otolemur_garnettii
ENSCPBG00000022571	SNRNP200	99	97.872	ENSOARG00000013949	SNRNP200	100	96.544	Ovis_aries
ENSCPBG00000022571	SNRNP200	100	97.756	ENSPPAG00000041559	SNRNP200	100	97.756	Pan_paniscus
ENSCPBG00000022571	SNRNP200	100	97.849	ENSPPRG00000004435	SNRNP200	100	97.849	Panthera_pardus
ENSCPBG00000022571	SNRNP200	100	97.429	ENSPTIG00000006380	SNRNP200	100	97.429	Panthera_tigris_altaica
ENSCPBG00000022571	SNRNP200	100	97.756	ENSPTRG00000012230	SNRNP200	100	97.756	Pan_troglodytes
ENSCPBG00000022571	SNRNP200	100	97.756	ENSPANG00000006017	SNRNP200	100	97.756	Papio_anubis
ENSCPBG00000022571	SNRNP200	100	90.837	ENSPKIG00000014762	snrnp200	99	90.837	Paramormyrops_kingsleyae
ENSCPBG00000022571	SNRNP200	100	98.224	ENSPSIG00000008580	SNRNP200	100	98.224	Pelodiscus_sinensis
ENSCPBG00000022571	SNRNP200	99	100.000	ENSPCIG00000023050	SNRNP200	100	97.849	Phascolarctos_cinereus
ENSCPBG00000022571	SNRNP200	100	90.607	ENSPFOG00000015110	snrnp200	99	90.607	Poecilia_formosa
ENSCPBG00000022571	SNRNP200	97	90.346	ENSPLAG00000006711	snrnp200	99	90.346	Poecilia_latipinna
ENSCPBG00000022571	SNRNP200	97	90.291	ENSPMEG00000021166	snrnp200	99	90.291	Poecilia_mexicana
ENSCPBG00000022571	SNRNP200	100	90.650	ENSPREG00000008875	snrnp200	99	90.650	Poecilia_reticulata
ENSCPBG00000022571	SNRNP200	100	97.756	ENSPPYG00000012068	SNRNP200	100	97.756	Pongo_abelii
ENSCPBG00000022571	SNRNP200	93	100.000	ENSPCAG00000008536	SNRNP200	86	98.402	Procavia_capensis
ENSCPBG00000022571	SNRNP200	100	97.756	ENSPCOG00000024608	SNRNP200	100	97.756	Propithecus_coquereli
ENSCPBG00000022571	SNRNP200	99	97.872	ENSPVAG00000005860	SNRNP200	92	98.980	Pteropus_vampyrus
ENSCPBG00000022571	SNRNP200	99	92.500	ENSPNYG00000017476	snrnp200	99	88.278	Pundamilia_nyererei
ENSCPBG00000022571	SNRNP200	100	88.004	ENSPNAG00000010998	snrnp200	99	88.004	Pygocentrus_nattereri
ENSCPBG00000022571	SNRNP200	100	97.662	ENSRNOG00000012157	Snrnp200	100	97.662	Rattus_norvegicus
ENSCPBG00000022571	SNRNP200	100	97.756	ENSRBIG00000044690	-	100	97.756	Rhinopithecus_bieti
ENSCPBG00000022571	SNRNP200	100	97.756	ENSRROG00000037952	-	100	97.756	Rhinopithecus_roxellana
ENSCPBG00000022571	SNRNP200	100	97.756	ENSSBOG00000035471	SNRNP200	100	97.756	Saimiri_boliviensis_boliviensis
ENSCPBG00000022571	SNRNP200	99	100.000	ENSSHAG00000000758	SNRNP200	100	97.729	Sarcophilus_harrisii
ENSCPBG00000022571	SNRNP200	99	95.000	ENSSFOG00015018826	snrnp200	99	90.930	Scleropages_formosus
ENSCPBG00000022571	SNRNP200	99	90.432	ENSSMAG00000005463	snrnp200	99	90.369	Scophthalmus_maximus
ENSCPBG00000022571	SNRNP200	99	92.500	ENSSDUG00000021410	snrnp200	99	90.510	Seriola_dumerili
ENSCPBG00000022571	SNRNP200	99	90.572	ENSSLDG00000010884	snrnp200	99	90.510	Seriola_lalandi_dorsalis
ENSCPBG00000022571	SNRNP200	95	98.123	ENSSARG00000010728	SNRNP200	96	98.123	Sorex_araneus
ENSCPBG00000022571	SNRNP200	99	100.000	ENSSPUG00000003726	-	100	97.943	Sphenodon_punctatus
ENSCPBG00000022571	SNRNP200	99	92.500	ENSSPAG00000001842	snrnp200	99	90.650	Stegastes_partitus
ENSCPBG00000022571	SNRNP200	100	97.662	ENSSSCG00000008127	SNRNP200	100	97.662	Sus_scrofa
ENSCPBG00000022571	SNRNP200	99	87.998	ENSTGUG00000014475	-	100	87.998	Taeniopygia_guttata
ENSCPBG00000022571	SNRNP200	99	92.500	ENSTRUG00000001307	snrnp200	99	90.323	Takifugu_rubripes
ENSCPBG00000022571	SNRNP200	99	87.755	ENSTNIG00000004320	snrnp200	100	79.121	Tetraodon_nigroviridis
ENSCPBG00000022571	SNRNP200	83	98.182	ENSTBEG00000003329	-	67	98.182	Tupaia_belangeri
ENSCPBG00000022571	SNRNP200	100	97.475	ENSTTRG00000004983	SNRNP200	100	97.475	Tursiops_truncatus
ENSCPBG00000022571	SNRNP200	75	91.570	ENSUAMG00000008395	-	95	91.570	Ursus_americanus
ENSCPBG00000022571	SNRNP200	100	97.849	ENSUMAG00000012385	SNRNP200	100	97.849	Ursus_maritimus
ENSCPBG00000022571	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCPBG00000022571	SNRNP200	100	97.937	ENSVVUG00000026247	SNRNP200	100	97.937	Vulpes_vulpes
ENSCPBG00000022571	SNRNP200	100	94.398	ENSXETG00000001243	snrnp200	100	94.398	Xenopus_tropicalis
ENSCPBG00000022571	SNRNP200	97	90.540	ENSXMAG00000002058	snrnp200	98	90.540	Xiphophorus_maculatus