EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000023187 (Gene tree)
Gene ID: 101947953
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 67600 bases
Position: chrKK088194.1:6890433-6958032
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000033085	zf-C2H2	PF00096.26	1.9e-19	1	3
ENSCPBP00000033085	zf-C2H2	PF00096.26	1.9e-19	2	3
ENSCPBP00000033085	zf-C2H2	PF00096.26	1.9e-19	3	3
ENSCPBP00000033086	zf-C2H2	PF00096.26	1.9e-19	1	3
ENSCPBP00000033086	zf-C2H2	PF00096.26	1.9e-19	2	3
ENSCPBP00000033086	zf-C2H2	PF00096.26	1.9e-19	3	3
ENSCPBP00000033085	zf-met	PF12874.7	4e-06	1	1
ENSCPBP00000033086	zf-met	PF12874.7	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000038895	PRDM4-202	3852	-	ENSCPBP00000033086	794 (aa)	XP_008177582	UPI000388A725
ENSCPBT00000038894	PRDM4-201	4124	-	ENSCPBP00000033085	794 (aa)	XP_008177582	UPI000388A725

Gene Model

Click here to download ENSCPBG00000023187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000023187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000023187	PRDM4	54	34.156	ENSCPBG00000012917	PRDM15	61	34.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000023187	PRDM4	100	87.829	ENSG00000110851	PRDM4	95	92.958	Homo_sapiens
ENSCPBG00000023187	PRDM4	100	88.471	ENSAMEG00000016174	PRDM4	99	88.596	Ailuropoda_melanoleuca
ENSCPBG00000023187	PRDM4	100	91.069	ENSAPLG00000009846	PRDM4	99	91.069	Anas_platyrhynchos
ENSCPBG00000023187	PRDM4	100	87.829	ENSANAG00000024800	PRDM4	99	87.453	Aotus_nancymaae
ENSCPBG00000023187	PRDM4	100	88.331	ENSBTAG00000012999	PRDM4	99	88.331	Bos_taurus
ENSCPBG00000023187	PRDM4	100	87.578	ENSCJAG00000015261	PRDM4	99	87.955	Callithrix_jacchus
ENSCPBG00000023187	PRDM4	100	88.331	ENSCAFG00000001788	PRDM4	99	88.833	Canis_familiaris
ENSCPBG00000023187	PRDM4	100	88.331	ENSCAFG00020004916	PRDM4	99	88.833	Canis_lupus_dingo
ENSCPBG00000023187	PRDM4	100	88.080	ENSCHIG00000019409	PRDM4	99	88.582	Capra_hircus
ENSCPBG00000023187	PRDM4	100	87.578	ENSTSYG00000009248	PRDM4	99	88.080	Carlito_syrichta
ENSCPBG00000023187	PRDM4	100	83.730	ENSCAPG00000013937	PRDM4	99	83.730	Cavia_aperea
ENSCPBG00000023187	PRDM4	100	83.230	ENSCPOG00000022385	PRDM4	100	83.230	Cavia_porcellus
ENSCPBG00000023187	PRDM4	100	87.955	ENSCCAG00000036033	PRDM4	99	88.331	Cebus_capucinus
ENSCPBG00000023187	PRDM4	100	87.829	ENSCATG00000044797	PRDM4	99	88.206	Cercocebus_atys
ENSCPBG00000023187	PRDM4	100	84.950	ENSCLAG00000007545	PRDM4	100	85.199	Chinchilla_lanigera
ENSCPBG00000023187	PRDM4	100	87.955	ENSCSAG00000002896	PRDM4	99	88.331	Chlorocebus_sabaeus
ENSCPBG00000023187	PRDM4	71	91.509	ENSCHOG00000001744	PRDM4	85	91.509	Choloepus_hoffmanni
ENSCPBG00000023187	PRDM4	100	87.955	ENSCANG00000021804	PRDM4	99	88.331	Colobus_angolensis_palliatus
ENSCPBG00000023187	PRDM4	100	85.162	ENSCGRG00001015102	-	100	85.287	Cricetulus_griseus_chok1gshd
ENSCPBG00000023187	PRDM4	96	85.123	ENSCGRG00000004044	-	100	85.252	Cricetulus_griseus_crigri
ENSCPBG00000023187	PRDM4	100	86.951	ENSDNOG00000032478	PRDM4	99	88.184	Dasypus_novemcinctus
ENSCPBG00000023187	PRDM4	100	74.372	ENSDORG00000015081	-	100	74.497	Dipodomys_ordii
ENSCPBG00000023187	PRDM4	94	46.089	ENSEBUG00000003775	prdm4	99	46.006	Eptatretus_burgeri
ENSCPBG00000023187	PRDM4	100	88.331	ENSECAG00000015423	PRDM4	99	88.833	Equus_caballus
ENSCPBG00000023187	PRDM4	94	86.782	ENSEEUG00000006569	PRDM4	99	86.916	Erinaceus_europaeus
ENSCPBG00000023187	PRDM4	99	59.903	ENSELUG00000015265	prdm4	94	61.647	Esox_lucius
ENSCPBG00000023187	PRDM4	100	88.206	ENSFCAG00000022478	PRDM4	99	88.708	Felis_catus
ENSCPBG00000023187	PRDM4	100	92.337	ENSFALG00000013342	PRDM4	100	92.337	Ficedula_albicollis
ENSCPBG00000023187	PRDM4	100	91.468	ENSGALG00000012619	PRDM4	99	91.468	Gallus_gallus
ENSCPBG00000023187	PRDM4	100	98.615	ENSGAGG00000002763	PRDM4	95	98.615	Gopherus_agassizii
ENSCPBG00000023187	PRDM4	100	87.955	ENSGGOG00000001244	PRDM4	99	88.331	Gorilla_gorilla
ENSCPBG00000023187	PRDM4	100	86.307	ENSHGLG00000004590	PRDM4	98	86.307	Heterocephalus_glaber_female
ENSCPBG00000023187	PRDM4	100	85.448	ENSHGLG00100007464	PRDM4	100	85.448	Heterocephalus_glaber_male
ENSCPBG00000023187	PRDM4	95	61.837	ENSIPUG00000024162	prdm4	94	61.578	Ictalurus_punctatus
ENSCPBG00000023187	PRDM4	100	87.829	ENSSTOG00000016168	PRDM4	99	87.829	Ictidomys_tridecemlineatus
ENSCPBG00000023187	PRDM4	79	86.792	ENSJJAG00000022448	-	95	84.282	Jaculus_jaculus
ENSCPBG00000023187	PRDM4	100	74.629	ENSLACG00000007452	PRDM4	99	74.752	Latimeria_chalumnae
ENSCPBG00000023187	PRDM4	79	41.732	ENSLOCG00000017092	prdm4	93	55.411	Lepisosteus_oculatus
ENSCPBG00000023187	PRDM4	98	87.944	ENSLAFG00000001483	PRDM4	100	87.944	Loxodonta_africana
ENSCPBG00000023187	PRDM4	100	88.080	ENSMFAG00000041862	PRDM4	99	88.457	Macaca_fascicularis
ENSCPBG00000023187	PRDM4	100	88.080	ENSMMUG00000015550	PRDM4	99	88.457	Macaca_mulatta
ENSCPBG00000023187	PRDM4	100	88.080	ENSMNEG00000032319	PRDM4	99	88.457	Macaca_nemestrina
ENSCPBG00000023187	PRDM4	100	87.955	ENSMLEG00000039607	PRDM4	99	88.331	Mandrillus_leucophaeus
ENSCPBG00000023187	PRDM4	100	82.957	ENSMGAG00000012815	PRDM4	100	82.957	Meleagris_gallopavo
ENSCPBG00000023187	PRDM4	100	86.700	ENSMICG00000007807	PRDM4	99	87.202	Microcebus_murinus
ENSCPBG00000023187	PRDM4	100	85.930	ENSMOCG00000000753	Prdm4	99	86.307	Microtus_ochrogaster
ENSCPBG00000023187	PRDM4	100	87.060	ENSMUSG00000035529	Prdm4	100	87.312	Mus_musculus
ENSCPBG00000023187	PRDM4	100	85.947	MGP_PahariEiJ_G0031398	Prdm4	100	86.531	Mus_pahari
ENSCPBG00000023187	PRDM4	100	86.951	MGP_SPRETEiJ_G0016505	Prdm4	100	87.802	Mus_spretus
ENSCPBG00000023187	PRDM4	100	82.022	ENSMPUG00000012238	PRDM4	99	82.206	Mustela_putorius_furo
ENSCPBG00000023187	PRDM4	100	87.578	ENSMLUG00000000767	PRDM4	99	88.080	Myotis_lucifugus
ENSCPBG00000023187	PRDM4	100	86.575	ENSNGAG00000018627	Prdm4	100	87.077	Nannospalax_galili
ENSCPBG00000023187	PRDM4	100	87.704	ENSNLEG00000006748	PRDM4	99	88.080	Nomascus_leucogenys
ENSCPBG00000023187	PRDM4	89	86.620	ENSMEUG00000004495	PRDM4	89	86.620	Notamacropus_eugenii
ENSCPBG00000023187	PRDM4	89	88.095	ENSOPRG00000010192	PRDM4	89	88.095	Ochotona_princeps
ENSCPBG00000023187	PRDM4	100	85.302	ENSODEG00000014750	PRDM4	99	84.548	Octodon_degus
ENSCPBG00000023187	PRDM4	100	88.457	ENSOANG00000005526	PRDM4	99	88.582	Ornithorhynchus_anatinus
ENSCPBG00000023187	PRDM4	94	89.270	ENSOCUG00000012859	PRDM4	96	89.270	Oryctolagus_cuniculus
ENSCPBG00000023187	PRDM4	100	87.578	ENSOGAG00000011945	PRDM4	100	87.829	Otolemur_garnettii
ENSCPBG00000023187	PRDM4	100	87.704	ENSOARG00000017955	PRDM4	99	88.206	Ovis_aries
ENSCPBG00000023187	PRDM4	100	87.955	ENSPPAG00000038438	PRDM4	99	88.331	Pan_paniscus
ENSCPBG00000023187	PRDM4	100	88.206	ENSPPRG00000004144	PRDM4	99	88.708	Panthera_pardus
ENSCPBG00000023187	PRDM4	100	88.206	ENSPTIG00000005847	PRDM4	99	88.708	Panthera_tigris_altaica
ENSCPBG00000023187	PRDM4	100	87.955	ENSPTRG00000005400	PRDM4	99	88.331	Pan_troglodytes
ENSCPBG00000023187	PRDM4	100	88.080	ENSPANG00000022084	PRDM4	99	88.457	Papio_anubis
ENSCPBG00000023187	PRDM4	99	59.264	ENSPKIG00000000875	prdm4	99	59.857	Paramormyrops_kingsleyae
ENSCPBG00000023187	PRDM4	89	96.685	ENSPSIG00000012066	PRDM4	100	96.685	Pelodiscus_sinensis
ENSCPBG00000023187	PRDM4	100	86.951	ENSPEMG00000014598	Prdm4	100	86.449	Peromyscus_maniculatus_bairdii
ENSCPBG00000023187	PRDM4	100	85.500	ENSPCIG00000009471	PRDM4	99	85.500	Phascolarctos_cinereus
ENSCPBG00000023187	PRDM4	100	87.704	ENSPPYG00000004913	PRDM4	99	88.080	Pongo_abelii
ENSCPBG00000023187	PRDM4	83	90.698	ENSPCAG00000009987	PRDM4	83	90.698	Procavia_capensis
ENSCPBG00000023187	PRDM4	100	86.951	ENSPCOG00000021060	PRDM4	99	87.453	Propithecus_coquereli
ENSCPBG00000023187	PRDM4	100	87.719	ENSPVAG00000001596	PRDM4	99	88.346	Pteropus_vampyrus
ENSCPBG00000023187	PRDM4	100	86.466	ENSRNOG00000004962	Prdm4	100	86.090	Rattus_norvegicus
ENSCPBG00000023187	PRDM4	100	88.206	ENSRBIG00000035488	PRDM4	99	88.582	Rhinopithecus_bieti
ENSCPBG00000023187	PRDM4	100	88.080	ENSRROG00000012779	PRDM4	99	88.457	Rhinopithecus_roxellana
ENSCPBG00000023187	PRDM4	100	87.829	ENSSBOG00000000403	PRDM4	99	88.206	Saimiri_boliviensis_boliviensis
ENSCPBG00000023187	PRDM4	99	63.659	ENSSFOG00015023358	prdm4	98	63.782	Scleropages_formosus
ENSCPBG00000023187	PRDM4	100	88.080	ENSSSCG00000000160	PRDM4	99	88.708	Sus_scrofa
ENSCPBG00000023187	PRDM4	100	92.462	ENSTGUG00000010962	-	99	92.462	Taeniopygia_guttata
ENSCPBG00000023187	PRDM4	74	81.911	ENSTBEG00000001732	PRDM4	84	81.911	Tupaia_belangeri
ENSCPBG00000023187	PRDM4	100	87.327	ENSTTRG00000011056	PRDM4	99	87.829	Tursiops_truncatus
ENSCPBG00000023187	PRDM4	100	88.331	ENSUAMG00000022796	PRDM4	99	88.833	Ursus_americanus
ENSCPBG00000023187	PRDM4	100	88.331	ENSUMAG00000017231	PRDM4	99	88.833	Ursus_maritimus
ENSCPBG00000023187	PRDM4	100	88.331	ENSVPAG00000002215	PRDM4	100	88.331	Vicugna_pacos
ENSCPBG00000023187	PRDM4	100	88.331	ENSVVUG00000023397	PRDM4	99	88.833	Vulpes_vulpes