EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000023501 (Gene tree)
Gene ID: 101945706
Gene Symbol: CRNKL1
Alias: CLF|CRN|Clf1|SYF3
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 25769 bases
Position: chr3:8721318-8747086
Accession: 15762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000033623	HAT	PF02184.16	1.2e-38	1	2
ENSCPBP00000033623	HAT	PF02184.16	1.2e-38	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000039480	CRNKL1-201	2261	XM_008174011	ENSCPBP00000033623	686 (aa)	XP_008172233	UPI000388A91B

Gene Model

Click here to download ENSCPBG00000023501's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000023501's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000023501	CRNKL1	99	92.993	ENSG00000101343	CRNKL1	99	92.993	Homo_sapiens
ENSCPBG00000023501	CRNKL1	100	87.318	ENSAPOG00000009705	crnkl1	98	86.490	Acanthochromis_polyacanthus
ENSCPBG00000023501	CRNKL1	99	94.118	ENSAMEG00000000270	CRNKL1	83	94.161	Ailuropoda_melanoleuca
ENSCPBG00000023501	CRNKL1	98	87.704	ENSACIG00000015267	crnkl1	90	87.704	Amphilophus_citrinellus
ENSCPBG00000023501	CRNKL1	100	87.464	ENSAOCG00000021964	crnkl1	91	87.464	Amphiprion_ocellaris
ENSCPBG00000023501	CRNKL1	100	87.318	ENSAPEG00000015041	crnkl1	91	87.318	Amphiprion_percula
ENSCPBG00000023501	CRNKL1	99	86.637	ENSATEG00000001068	crnkl1	89	86.637	Anabas_testudineus
ENSCPBG00000023501	CRNKL1	99	92.117	ENSAPLG00000013105	CRNKL1	99	92.117	Anas_platyrhynchos
ENSCPBG00000023501	CRNKL1	99	94.591	ENSACAG00000005284	CRNKL1	99	94.591	Anolis_carolinensis
ENSCPBG00000023501	CRNKL1	92	93.333	ENSANAG00000024889	CRNKL1	99	93.333	Aotus_nancymaae
ENSCPBG00000023501	CRNKL1	99	88.201	ENSACLG00000010813	crnkl1	90	88.201	Astatotilapia_calliptera
ENSCPBG00000023501	CRNKL1	97	89.925	ENSAMXG00000018334	crnkl1	94	87.500	Astyanax_mexicanus
ENSCPBG00000023501	CRNKL1	99	93.431	ENSBTAG00000008472	CRNKL1	99	93.431	Bos_taurus
ENSCPBG00000023501	CRNKL1	93	62.986	WBGene00019762	M03F8.3	91	62.225	Caenorhabditis_elegans
ENSCPBG00000023501	CRNKL1	99	92.847	ENSCJAG00000005393	CRNKL1	99	92.847	Callithrix_jacchus
ENSCPBG00000023501	CRNKL1	99	93.824	ENSCAFG00000005333	CRNKL1	94	93.869	Canis_familiaris
ENSCPBG00000023501	CRNKL1	99	93.869	ENSCAFG00020027488	CRNKL1	99	93.869	Canis_lupus_dingo
ENSCPBG00000023501	CRNKL1	99	92.263	ENSCHIG00000013171	CRNKL1	99	92.263	Capra_hircus
ENSCPBG00000023501	CRNKL1	99	93.139	ENSTSYG00000004197	CRNKL1	99	93.139	Carlito_syrichta
ENSCPBG00000023501	CRNKL1	96	92.246	ENSCAPG00000010501	CRNKL1	99	92.246	Cavia_aperea
ENSCPBG00000023501	CRNKL1	99	92.847	ENSCPOG00000004418	CRNKL1	99	92.847	Cavia_porcellus
ENSCPBG00000023501	CRNKL1	99	92.701	ENSCCAG00000027037	CRNKL1	99	92.701	Cebus_capucinus
ENSCPBG00000023501	CRNKL1	99	92.847	ENSCATG00000034247	CRNKL1	99	92.847	Cercocebus_atys
ENSCPBG00000023501	CRNKL1	99	93.577	ENSCLAG00000013859	CRNKL1	99	93.577	Chinchilla_lanigera
ENSCPBG00000023501	CRNKL1	99	92.847	ENSCSAG00000011434	CRNKL1	99	92.847	Chlorocebus_sabaeus
ENSCPBG00000023501	CRNKL1	99	93.382	ENSCHOG00000006371	CRNKL1	84	93.431	Choloepus_hoffmanni
ENSCPBG00000023501	CRNKL1	97	69.127	ENSCING00000002709	-	99	67.737	Ciona_intestinalis
ENSCPBG00000023501	CRNKL1	99	92.993	ENSCANG00000038789	CRNKL1	99	92.993	Colobus_angolensis_palliatus
ENSCPBG00000023501	CRNKL1	99	94.015	ENSCGRG00001001115	-	99	94.015	Cricetulus_griseus_chok1gshd
ENSCPBG00000023501	CRNKL1	99	94.015	ENSCGRG00001000687	-	99	94.015	Cricetulus_griseus_chok1gshd
ENSCPBG00000023501	CRNKL1	99	94.015	ENSCGRG00000007854	Crnkl1	99	94.015	Cricetulus_griseus_crigri
ENSCPBG00000023501	CRNKL1	98	88.077	ENSCSEG00000005594	crnkl1	85	88.077	Cynoglossus_semilaevis
ENSCPBG00000023501	CRNKL1	97	88.156	ENSCVAG00000015172	crnkl1	92	86.152	Cyprinodon_variegatus
ENSCPBG00000023501	CRNKL1	97	88.386	ENSDARG00000007901	crnkl1	91	87.153	Danio_rerio
ENSCPBG00000023501	CRNKL1	99	93.842	ENSDNOG00000016226	CRNKL1	95	93.842	Dasypus_novemcinctus
ENSCPBG00000023501	CRNKL1	98	85.373	ENSDORG00000023724	-	99	85.373	Dipodomys_ordii
ENSCPBG00000023501	CRNKL1	99	91.896	ENSDORG00000000394	-	99	91.896	Dipodomys_ordii
ENSCPBG00000023501	CRNKL1	98	84.375	ENSDORG00000030174	-	99	84.375	Dipodomys_ordii
ENSCPBG00000023501	CRNKL1	96	69.219	FBgn0000377	crn	95	69.219	Drosophila_melanogaster
ENSCPBG00000023501	CRNKL1	99	81.606	ENSETEG00000003711	CRNKL1	84	81.606	Echinops_telfairi
ENSCPBG00000023501	CRNKL1	99	61.155	ENSEBUG00000013461	crnkl1	96	54.307	Eptatretus_burgeri
ENSCPBG00000023501	CRNKL1	99	94.161	ENSEASG00005002072	CRNKL1	99	94.161	Equus_asinus_asinus
ENSCPBG00000023501	CRNKL1	99	94.161	ENSECAG00000022215	CRNKL1	99	94.161	Equus_caballus
ENSCPBG00000023501	CRNKL1	99	91.324	ENSEEUG00000000413	CRNKL1	92	91.387	Erinaceus_europaeus
ENSCPBG00000023501	CRNKL1	98	87.294	ENSELUG00000015424	crnkl1	97	85.985	Esox_lucius
ENSCPBG00000023501	CRNKL1	99	94.161	ENSFCAG00000000714	CRNKL1	99	94.161	Felis_catus
ENSCPBG00000023501	CRNKL1	98	93.006	ENSFALG00000004611	CRNKL1	100	93.006	Ficedula_albicollis
ENSCPBG00000023501	CRNKL1	99	93.723	ENSFDAG00000000604	CRNKL1	99	93.723	Fukomys_damarensis
ENSCPBG00000023501	CRNKL1	98	87.537	ENSFHEG00000013163	crnkl1	88	87.537	Fundulus_heteroclitus
ENSCPBG00000023501	CRNKL1	97	86.398	ENSGMOG00000007609	crnkl1	94	84.862	Gadus_morhua
ENSCPBG00000023501	CRNKL1	100	94.461	ENSGALG00000008429	CRNKL1	100	94.461	Gallus_gallus
ENSCPBG00000023501	CRNKL1	98	87.034	ENSGAFG00000014249	crnkl1	89	86.944	Gambusia_affinis
ENSCPBG00000023501	CRNKL1	99	85.401	ENSGACG00000011852	crnkl1	91	85.401	Gasterosteus_aculeatus
ENSCPBG00000023501	CRNKL1	96	98.323	ENSGAGG00000021233	CRNKL1	100	99.823	Gopherus_agassizii
ENSCPBG00000023501	CRNKL1	99	92.993	ENSGGOG00000014176	CRNKL1	99	92.993	Gorilla_gorilla
ENSCPBG00000023501	CRNKL1	99	88.201	ENSHBUG00000005246	crnkl1	90	88.201	Haplochromis_burtoni
ENSCPBG00000023501	CRNKL1	99	93.431	ENSHGLG00000010856	CRNKL1	99	93.431	Heterocephalus_glaber_female
ENSCPBG00000023501	CRNKL1	99	93.431	ENSHGLG00100011521	CRNKL1	99	93.431	Heterocephalus_glaber_male
ENSCPBG00000023501	CRNKL1	97	86.228	ENSHCOG00000006420	crnkl1	98	84.773	Hippocampus_comes
ENSCPBG00000023501	CRNKL1	93	70.597	ENSIPUG00000000315	-	99	71.969	Ictalurus_punctatus
ENSCPBG00000023501	CRNKL1	94	89.214	ENSIPUG00000006751	crnkl1	93	87.313	Ictalurus_punctatus
ENSCPBG00000023501	CRNKL1	97	76.621	ENSIPUG00000006836	-	98	76.383	Ictalurus_punctatus
ENSCPBG00000023501	CRNKL1	99	93.869	ENSSTOG00000014747	CRNKL1	99	93.869	Ictidomys_tridecemlineatus
ENSCPBG00000023501	CRNKL1	99	91.726	ENSJJAG00000016926	Crnkl1	99	91.726	Jaculus_jaculus
ENSCPBG00000023501	CRNKL1	98	87.834	ENSKMAG00000003620	crnkl1	86	87.740	Kryptolebias_marmoratus
ENSCPBG00000023501	CRNKL1	97	71.217	ENSLBEG00000003543	crnkl1	92	71.679	Labrus_bergylta
ENSCPBG00000023501	CRNKL1	99	89.181	ENSLACG00000001129	CRNKL1	100	89.181	Latimeria_chalumnae
ENSCPBG00000023501	CRNKL1	97	90.226	ENSLOCG00000016889	crnkl1	94	89.381	Lepisosteus_oculatus
ENSCPBG00000023501	CRNKL1	99	93.003	ENSLAFG00000004512	CRNKL1	99	93.732	Loxodonta_africana
ENSCPBG00000023501	CRNKL1	99	92.847	ENSMFAG00000039893	CRNKL1	99	92.847	Macaca_fascicularis
ENSCPBG00000023501	CRNKL1	99	92.847	ENSMMUG00000007709	CRNKL1	99	92.847	Macaca_mulatta
ENSCPBG00000023501	CRNKL1	99	92.847	ENSMNEG00000037490	CRNKL1	99	92.847	Macaca_nemestrina
ENSCPBG00000023501	CRNKL1	99	92.847	ENSMLEG00000034885	CRNKL1	99	92.847	Mandrillus_leucophaeus
ENSCPBG00000023501	CRNKL1	100	86.735	ENSMAMG00000008757	crnkl1	90	86.735	Mastacembelus_armatus
ENSCPBG00000023501	CRNKL1	99	88.201	ENSMZEG00005022345	crnkl1	90	88.201	Maylandia_zebra
ENSCPBG00000023501	CRNKL1	100	94.032	ENSMGAG00000003452	CRNKL1	94	94.032	Meleagris_gallopavo
ENSCPBG00000023501	CRNKL1	99	93.869	ENSMAUG00000020764	Crnkl1	99	93.869	Mesocricetus_auratus
ENSCPBG00000023501	CRNKL1	99	93.577	ENSMICG00000006048	CRNKL1	99	93.577	Microcebus_murinus
ENSCPBG00000023501	CRNKL1	97	67.018	ENSMOCG00000004179	-	97	66.277	Microtus_ochrogaster
ENSCPBG00000023501	CRNKL1	99	85.940	ENSMOCG00000000681	-	99	85.940	Microtus_ochrogaster
ENSCPBG00000023501	CRNKL1	92	86.234	ENSMMOG00000017601	crnkl1	97	86.234	Mola_mola
ENSCPBG00000023501	CRNKL1	99	90.778	ENSMODG00000005961	-	99	90.778	Monodelphis_domestica
ENSCPBG00000023501	CRNKL1	99	85.839	ENSMODG00000010857	-	99	85.839	Monodelphis_domestica
ENSCPBG00000023501	CRNKL1	99	63.910	ENSMALG00000011211	crnkl1	89	63.783	Monopterus_albus
ENSCPBG00000023501	CRNKL1	99	93.869	MGP_CAROLIEiJ_G0024394	Crnkl1	99	93.869	Mus_caroli
ENSCPBG00000023501	CRNKL1	99	94.015	ENSMUSG00000001767	Crnkl1	99	94.015	Mus_musculus
ENSCPBG00000023501	CRNKL1	99	92.409	MGP_PahariEiJ_G0025838	Crnkl1	99	92.409	Mus_pahari
ENSCPBG00000023501	CRNKL1	99	94.015	MGP_SPRETEiJ_G0025312	Crnkl1	99	94.015	Mus_spretus
ENSCPBG00000023501	CRNKL1	99	94.015	ENSMPUG00000001226	CRNKL1	99	94.015	Mustela_putorius_furo
ENSCPBG00000023501	CRNKL1	99	93.539	ENSMLUG00000016513	CRNKL1	89	93.586	Myotis_lucifugus
ENSCPBG00000023501	CRNKL1	99	91.691	ENSNGAG00000023097	Crnkl1	99	91.691	Nannospalax_galili
ENSCPBG00000023501	CRNKL1	99	88.348	ENSNBRG00000007867	crnkl1	89	88.348	Neolamprologus_brichardi
ENSCPBG00000023501	CRNKL1	99	89.343	ENSNLEG00000009862	CRNKL1	99	89.343	Nomascus_leucogenys
ENSCPBG00000023501	CRNKL1	99	85.860	ENSMEUG00000002361	-	99	85.860	Notamacropus_eugenii
ENSCPBG00000023501	CRNKL1	98	93.731	ENSMEUG00000012167	-	100	93.731	Notamacropus_eugenii
ENSCPBG00000023501	CRNKL1	86	63.707	ENSOPRG00000009242	-	61	63.707	Ochotona_princeps
ENSCPBG00000023501	CRNKL1	99	93.431	ENSODEG00000012175	CRNKL1	99	93.431	Octodon_degus
ENSCPBG00000023501	CRNKL1	99	88.201	ENSONIG00000018728	crnkl1	89	88.201	Oreochromis_niloticus
ENSCPBG00000023501	CRNKL1	99	93.373	ENSOCUG00000015484	CRNKL1	82	94.006	Oryctolagus_cuniculus
ENSCPBG00000023501	CRNKL1	100	84.985	ENSORLG00000017240	crnkl1	96	81.476	Oryzias_latipes
ENSCPBG00000023501	CRNKL1	97	86.957	ENSORLG00020001742	crnkl1	89	86.957	Oryzias_latipes_hni
ENSCPBG00000023501	CRNKL1	100	85.131	ENSORLG00015019564	crnkl1	92	85.131	Oryzias_latipes_hsok
ENSCPBG00000023501	CRNKL1	100	85.860	ENSOMEG00000019895	crnkl1	92	85.860	Oryzias_melastigma
ENSCPBG00000023501	CRNKL1	99	92.993	ENSOGAG00000011544	CRNKL1	99	92.993	Otolemur_garnettii
ENSCPBG00000023501	CRNKL1	99	93.382	ENSOARG00000002150	CRNKL1	89	93.431	Ovis_aries
ENSCPBG00000023501	CRNKL1	99	91.765	ENSPPAG00000027847	CRNKL1	83	91.825	Pan_paniscus
ENSCPBG00000023501	CRNKL1	99	94.161	ENSPPRG00000001955	CRNKL1	99	94.161	Panthera_pardus
ENSCPBG00000023501	CRNKL1	99	94.161	ENSPTIG00000007393	CRNKL1	99	94.161	Panthera_tigris_altaica
ENSCPBG00000023501	CRNKL1	99	92.993	ENSPTRG00000030609	CRNKL1	99	92.993	Pan_troglodytes
ENSCPBG00000023501	CRNKL1	99	92.847	ENSPANG00000017420	CRNKL1	99	92.847	Papio_anubis
ENSCPBG00000023501	CRNKL1	97	83.333	ENSPKIG00000017093	crnkl1	89	82.723	Paramormyrops_kingsleyae
ENSCPBG00000023501	CRNKL1	99	96.779	ENSPSIG00000012705	CRNKL1	99	96.779	Pelodiscus_sinensis
ENSCPBG00000023501	CRNKL1	99	80.294	ENSPMGG00000006263	crnkl1	96	80.294	Periophthalmus_magnuspinnatus
ENSCPBG00000023501	CRNKL1	99	94.307	ENSPEMG00000000073	-	99	94.307	Peromyscus_maniculatus_bairdii
ENSCPBG00000023501	CRNKL1	99	82.003	ENSPMAG00000002250	crnkl1	99	82.003	Petromyzon_marinus
ENSCPBG00000023501	CRNKL1	99	92.993	ENSPCIG00000025825	CRNKL1	96	92.993	Phascolarctos_cinereus
ENSCPBG00000023501	CRNKL1	98	86.885	ENSPFOG00000005102	crnkl1	91	86.795	Poecilia_formosa
ENSCPBG00000023501	CRNKL1	98	86.885	ENSPLAG00000007288	crnkl1	88	86.795	Poecilia_latipinna
ENSCPBG00000023501	CRNKL1	98	87.034	ENSPMEG00000008865	crnkl1	92	86.944	Poecilia_mexicana
ENSCPBG00000023501	CRNKL1	97	87.106	ENSPREG00000012615	crnkl1	90	86.647	Poecilia_reticulata
ENSCPBG00000023501	CRNKL1	99	92.941	ENSPPYG00000010747	CRNKL1	81	92.993	Pongo_abelii
ENSCPBG00000023501	CRNKL1	99	88.235	ENSPCAG00000003296	CRNKL1	85	88.321	Procavia_capensis
ENSCPBG00000023501	CRNKL1	99	92.353	ENSPCOG00000017608	CRNKL1	83	92.409	Propithecus_coquereli
ENSCPBG00000023501	CRNKL1	99	93.529	ENSPVAG00000006207	CRNKL1	83	93.577	Pteropus_vampyrus
ENSCPBG00000023501	CRNKL1	99	88.053	ENSPNYG00000001977	crnkl1	90	88.053	Pundamilia_nyererei
ENSCPBG00000023501	CRNKL1	98	90.611	ENSPNAG00000001507	crnkl1	98	85.756	Pygocentrus_nattereri
ENSCPBG00000023501	CRNKL1	99	94.015	ENSRNOG00000010587	Crnkl1	99	94.015	Rattus_norvegicus
ENSCPBG00000023501	CRNKL1	99	93.723	ENSRNOG00000040045	Crnkl1	99	93.723	Rattus_norvegicus
ENSCPBG00000023501	CRNKL1	99	92.701	ENSRBIG00000031770	CRNKL1	99	92.701	Rhinopithecus_bieti
ENSCPBG00000023501	CRNKL1	99	92.555	ENSRROG00000040450	CRNKL1	99	92.555	Rhinopithecus_roxellana
ENSCPBG00000023501	CRNKL1	94	38.171	YLR117C	CLF1	99	38.261	Saccharomyces_cerevisiae
ENSCPBG00000023501	CRNKL1	99	92.701	ENSSBOG00000029672	CRNKL1	99	92.701	Saimiri_boliviensis_boliviensis
ENSCPBG00000023501	CRNKL1	96	74.507	ENSSHAG00000011199	CRNKL1	99	74.507	Sarcophilus_harrisii
ENSCPBG00000023501	CRNKL1	97	88.537	ENSSFOG00015000946	crnkl1	89	86.715	Scleropages_formosus
ENSCPBG00000023501	CRNKL1	99	86.257	ENSSMAG00000007933	crnkl1	89	86.257	Scophthalmus_maximus
ENSCPBG00000023501	CRNKL1	100	79.767	ENSSDUG00000012625	crnkl1	87	80.441	Seriola_dumerili
ENSCPBG00000023501	CRNKL1	99	87.776	ENSSLDG00000021413	crnkl1	88	87.776	Seriola_lalandi_dorsalis
ENSCPBG00000023501	CRNKL1	99	93.139	ENSSARG00000006443	CRNKL1	82	93.139	Sorex_araneus
ENSCPBG00000023501	CRNKL1	99	94.591	ENSSPUG00000005254	CRNKL1	99	94.591	Sphenodon_punctatus
ENSCPBG00000023501	CRNKL1	97	88.906	ENSSPAG00000016150	crnkl1	86	88.906	Stegastes_partitus
ENSCPBG00000023501	CRNKL1	99	94.015	ENSSSCG00000038587	CRNKL1	99	94.015	Sus_scrofa
ENSCPBG00000023501	CRNKL1	100	93.013	ENSTGUG00000007645	CRNKL1	98	93.013	Taeniopygia_guttata
ENSCPBG00000023501	CRNKL1	98	83.010	ENSTRUG00000015417	crnkl1	90	82.353	Takifugu_rubripes
ENSCPBG00000023501	CRNKL1	97	87.126	ENSTNIG00000010710	crnkl1	99	85.735	Tetraodon_nigroviridis
ENSCPBG00000023501	CRNKL1	91	92.000	ENSTBEG00000001304	CRNKL1	82	92.063	Tupaia_belangeri
ENSCPBG00000023501	CRNKL1	91	89.600	ENSTTRG00000000484	CRNKL1	81	89.683	Tursiops_truncatus
ENSCPBG00000023501	CRNKL1	99	94.161	ENSUAMG00000018586	CRNKL1	99	94.161	Ursus_americanus
ENSCPBG00000023501	CRNKL1	99	94.161	ENSUMAG00000024957	CRNKL1	99	94.161	Ursus_maritimus
ENSCPBG00000023501	CRNKL1	99	93.824	ENSVVUG00000012559	CRNKL1	82	93.869	Vulpes_vulpes
ENSCPBG00000023501	CRNKL1	100	90.407	ENSXETG00000009698	crnkl1	100	89.665	Xenopus_tropicalis
ENSCPBG00000023501	CRNKL1	98	86.012	ENSXCOG00000000824	crnkl1	90	85.926	Xiphophorus_couchianus
ENSCPBG00000023501	CRNKL1	98	87.034	ENSXMAG00000006896	crnkl1	90	86.944	Xiphophorus_maculatus