EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000023533 (Gene tree)
Gene ID: 101947639
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 88564 bases
Position: chr3:9618421-9706984
Accession: 12836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000033677	XRN_N	PF03159.18	3.8e-102	1	1
ENSCPBP00000033684	XRN_N	PF03159.18	4.4e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000039545	XRN2-202	4043	-	ENSCPBP00000033684	934 (aa)	XP_005287543	UPI0003890A4D
ENSCPBT00000039538	XRN2-201	3690	XM_005287485	ENSCPBP00000033677	958 (aa)	XP_005287542	UPI000388C697

Gene Model

Click here to download ENSCPBG00000023533's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03008	Ribosome biogenesis in eukaryotes	KEGG
cpic03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000023533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000023533	XRN2	100	84.896	ENSG00000088930	XRN2	100	84.271	Homo_sapiens
ENSCPBG00000023533	XRN2	97	71.036	ENSAPOG00000009818	xrn2	100	70.092	Acanthochromis_polyacanthus
ENSCPBG00000023533	XRN2	100	85.417	ENSAMEG00000012581	XRN2	100	84.792	Ailuropoda_melanoleuca
ENSCPBG00000023533	XRN2	90	71.202	ENSACIG00000015047	xrn2	95	75.717	Amphilophus_citrinellus
ENSCPBG00000023533	XRN2	97	72.051	ENSAOCG00000023632	xrn2	100	70.892	Amphiprion_ocellaris
ENSCPBG00000023533	XRN2	97	71.776	ENSAPEG00000014871	xrn2	100	70.804	Amphiprion_percula
ENSCPBG00000023533	XRN2	95	73.002	ENSATEG00000001273	xrn2	98	72.392	Anabas_testudineus
ENSCPBG00000023533	XRN2	99	88.853	ENSAPLG00000013869	XRN2	99	88.532	Anas_platyrhynchos
ENSCPBG00000023533	XRN2	99	88.663	ENSACAG00000005565	XRN2	100	87.097	Anolis_carolinensis
ENSCPBG00000023533	XRN2	100	84.896	ENSANAG00000020126	XRN2	100	84.271	Aotus_nancymaae
ENSCPBG00000023533	XRN2	90	74.023	ENSACLG00000010522	xrn2	77	98.667	Astatotilapia_calliptera
ENSCPBG00000023533	XRN2	100	72.069	ENSAMXG00000018301	xrn2	100	71.910	Astyanax_mexicanus
ENSCPBG00000023533	XRN2	100	85.031	ENSBTAG00000011304	XRN2	100	84.511	Bos_taurus
ENSCPBG00000023533	XRN2	86	55.217	WBGene00006964	xrn-2	89	53.785	Caenorhabditis_elegans
ENSCPBG00000023533	XRN2	100	85.104	ENSCJAG00000005611	XRN2	100	84.479	Callithrix_jacchus
ENSCPBG00000023533	XRN2	100	85.417	ENSCAFG00000005185	XRN2	100	84.792	Canis_familiaris
ENSCPBG00000023533	XRN2	100	85.417	ENSCAFG00020027479	XRN2	100	84.792	Canis_lupus_dingo
ENSCPBG00000023533	XRN2	100	85.031	ENSCHIG00000006921	XRN2	100	84.511	Capra_hircus
ENSCPBG00000023533	XRN2	100	84.583	ENSTSYG00000008315	XRN2	100	83.958	Carlito_syrichta
ENSCPBG00000023533	XRN2	99	72.222	ENSCAPG00000010773	XRN2	99	69.765	Cavia_aperea
ENSCPBG00000023533	XRN2	100	85.000	ENSCPOG00000009407	XRN2	100	84.375	Cavia_porcellus
ENSCPBG00000023533	XRN2	100	85.104	ENSCATG00000040350	XRN2	100	84.479	Cercocebus_atys
ENSCPBG00000023533	XRN2	100	85.729	ENSCLAG00000013419	XRN2	100	85.312	Chinchilla_lanigera
ENSCPBG00000023533	XRN2	100	85.104	ENSCSAG00000011094	XRN2	100	84.479	Chlorocebus_sabaeus
ENSCPBG00000023533	XRN2	69	95.161	ENSCHOG00000013404	XRN2	70	95.161	Choloepus_hoffmanni
ENSCPBG00000023533	XRN2	85	60.812	ENSCING00000022336	-	100	61.290	Ciona_intestinalis
ENSCPBG00000023533	XRN2	89	57.998	ENSCSAVG00000011217	-	100	62.500	Ciona_savignyi
ENSCPBG00000023533	XRN2	100	85.104	ENSCANG00000040240	XRN2	100	84.479	Colobus_angolensis_palliatus
ENSCPBG00000023533	XRN2	98	84.509	ENSCGRG00001010676	Xrn2	99	84.936	Cricetulus_griseus_chok1gshd
ENSCPBG00000023533	XRN2	100	83.369	ENSCGRG00000006378	Xrn2	99	83.458	Cricetulus_griseus_crigri
ENSCPBG00000023533	XRN2	53	74.219	ENSCSEG00000005628	xrn2	100	74.023	Cynoglossus_semilaevis
ENSCPBG00000023533	XRN2	89	72.445	ENSCVAG00000018999	xrn2	98	77.905	Cyprinodon_variegatus
ENSCPBG00000023533	XRN2	100	70.859	ENSDARG00000101900	xrn2	96	79.159	Danio_rerio
ENSCPBG00000023533	XRN2	100	85.521	ENSDNOG00000001895	XRN2	100	84.896	Dasypus_novemcinctus
ENSCPBG00000023533	XRN2	100	83.958	ENSDORG00000005434	Xrn2	100	83.333	Dipodomys_ordii
ENSCPBG00000023533	XRN2	86	56.145	FBgn0031868	Rat1	91	54.715	Drosophila_melanogaster
ENSCPBG00000023533	XRN2	100	75.104	ENSETEG00000001740	XRN2	93	88.321	Echinops_telfairi
ENSCPBG00000023533	XRN2	84	71.065	ENSEBUG00000016136	xrn2	99	71.883	Eptatretus_burgeri
ENSCPBG00000023533	XRN2	100	84.792	ENSEASG00005002484	XRN2	100	84.167	Equus_asinus_asinus
ENSCPBG00000023533	XRN2	94	96.000	ENSECAG00000018988	XRN2	95	96.000	Equus_caballus
ENSCPBG00000023533	XRN2	80	96.000	ENSEEUG00000009265	XRN2	76	96.000	Erinaceus_europaeus
ENSCPBG00000023533	XRN2	100	70.211	ENSELUG00000000552	xrn2	100	71.589	Esox_lucius
ENSCPBG00000023533	XRN2	100	85.208	ENSFCAG00000007970	XRN2	100	84.583	Felis_catus
ENSCPBG00000023533	XRN2	100	88.321	ENSFALG00000004508	XRN2	100	88.321	Ficedula_albicollis
ENSCPBG00000023533	XRN2	100	85.208	ENSFDAG00000016311	XRN2	100	84.583	Fukomys_damarensis
ENSCPBG00000023533	XRN2	53	71.183	ENSFHEG00000013039	xrn2	98	71.183	Fundulus_heteroclitus
ENSCPBG00000023533	XRN2	86	74.667	ENSGMOG00000013436	xrn2	100	74.667	Gadus_morhua
ENSCPBG00000023533	XRN2	100	88.738	ENSGALG00000008372	XRN2	100	88.425	Gallus_gallus
ENSCPBG00000023533	XRN2	89	75.145	ENSGAFG00000014284	xrn2	98	75.145	Gambusia_affinis
ENSCPBG00000023533	XRN2	87	75.390	ENSGACG00000011870	xrn2	99	75.390	Gasterosteus_aculeatus
ENSCPBG00000023533	XRN2	100	98.747	ENSGAGG00000004884	XRN2	100	98.747	Gopherus_agassizii
ENSCPBG00000023533	XRN2	100	85.104	ENSGGOG00000013738	XRN2	100	84.479	Gorilla_gorilla
ENSCPBG00000023533	XRN2	54	75.526	ENSHBUG00000005077	xrn2	77	98.667	Haplochromis_burtoni
ENSCPBG00000023533	XRN2	100	84.271	ENSHGLG00000014831	XRN2	100	83.542	Heterocephalus_glaber_female
ENSCPBG00000023533	XRN2	100	84.271	ENSHGLG00100013130	XRN2	100	83.542	Heterocephalus_glaber_male
ENSCPBG00000023533	XRN2	99	68.008	ENSHCOG00000011994	xrn2	94	73.202	Hippocampus_comes
ENSCPBG00000023533	XRN2	100	71.240	ENSIPUG00000006639	xrn2	100	71.240	Ictalurus_punctatus
ENSCPBG00000023533	XRN2	100	85.417	ENSSTOG00000000589	XRN2	100	84.792	Ictidomys_tridecemlineatus
ENSCPBG00000023533	XRN2	100	84.896	ENSJJAG00000022128	Xrn2	100	84.271	Jaculus_jaculus
ENSCPBG00000023533	XRN2	53	81.518	ENSLBEG00000010041	xrn2	100	81.128	Labrus_bergylta
ENSCPBG00000023533	XRN2	96	78.060	ENSLACG00000008307	XRN2	99	81.005	Latimeria_chalumnae
ENSCPBG00000023533	XRN2	99	74.089	ENSLOCG00000016874	xrn2	100	73.854	Lepisosteus_oculatus
ENSCPBG00000023533	XRN2	100	85.000	ENSLAFG00000014624	XRN2	100	84.375	Loxodonta_africana
ENSCPBG00000023533	XRN2	100	85.104	ENSMFAG00000038122	XRN2	100	84.479	Macaca_fascicularis
ENSCPBG00000023533	XRN2	100	85.104	ENSMMUG00000011405	XRN2	100	84.479	Macaca_mulatta
ENSCPBG00000023533	XRN2	100	85.208	ENSMNEG00000040626	XRN2	100	84.583	Macaca_nemestrina
ENSCPBG00000023533	XRN2	100	85.104	ENSMLEG00000041897	XRN2	100	84.479	Mandrillus_leucophaeus
ENSCPBG00000023533	XRN2	95	72.777	ENSMAMG00000008633	xrn2	95	72.903	Mastacembelus_armatus
ENSCPBG00000023533	XRN2	90	75.862	ENSMZEG00005022362	xrn2	97	75.747	Maylandia_zebra
ENSCPBG00000023533	XRN2	99	86.994	ENSMGAG00000003196	XRN2	98	88.017	Meleagris_gallopavo
ENSCPBG00000023533	XRN2	100	85.000	ENSMAUG00000021842	Xrn2	100	84.375	Mesocricetus_auratus
ENSCPBG00000023533	XRN2	100	84.792	ENSMICG00000008126	XRN2	100	84.167	Microcebus_murinus
ENSCPBG00000023533	XRN2	100	83.958	ENSMOCG00000012588	Xrn2	100	83.958	Microtus_ochrogaster
ENSCPBG00000023533	XRN2	89	74.685	ENSMMOG00000017576	xrn2	96	76.326	Mola_mola
ENSCPBG00000023533	XRN2	100	86.430	ENSMODG00000006163	XRN2	100	86.221	Monodelphis_domestica
ENSCPBG00000023533	XRN2	91	73.453	ENSMALG00000011355	xrn2	95	77.629	Monopterus_albus
ENSCPBG00000023533	XRN2	100	84.375	MGP_CAROLIEiJ_G0024400	Xrn2	100	83.958	Mus_caroli
ENSCPBG00000023533	XRN2	100	84.479	ENSMUSG00000027433	Xrn2	100	84.062	Mus_musculus
ENSCPBG00000023533	XRN2	100	84.271	MGP_PahariEiJ_G0025843	Xrn2	100	83.854	Mus_pahari
ENSCPBG00000023533	XRN2	100	84.479	MGP_SPRETEiJ_G0025318	Xrn2	94	91.071	Mus_spretus
ENSCPBG00000023533	XRN2	100	83.828	ENSMPUG00000001198	XRN2	93	83.214	Mustela_putorius_furo
ENSCPBG00000023533	XRN2	100	85.312	ENSMLUG00000001536	XRN2	100	84.688	Myotis_lucifugus
ENSCPBG00000023533	XRN2	100	85.417	ENSNGAG00000018138	Xrn2	100	84.792	Nannospalax_galili
ENSCPBG00000023533	XRN2	90	76.322	ENSNBRG00000008062	xrn2	77	98.667	Neolamprologus_brichardi
ENSCPBG00000023533	XRN2	100	85.000	ENSNLEG00000009991	XRN2	100	84.375	Nomascus_leucogenys
ENSCPBG00000023533	XRN2	68	95.556	ENSMEUG00000008622	-	67	95.556	Notamacropus_eugenii
ENSCPBG00000023533	XRN2	77	76.963	ENSOPRG00000001397	-	77	76.963	Ochotona_princeps
ENSCPBG00000023533	XRN2	99	77.297	ENSODEG00000000860	-	98	77.263	Octodon_degus
ENSCPBG00000023533	XRN2	100	85.625	ENSODEG00000010745	-	100	85.208	Octodon_degus
ENSCPBG00000023533	XRN2	100	71.959	ENSONIG00000018720	xrn2	100	72.222	Oreochromis_niloticus
ENSCPBG00000023533	XRN2	100	86.848	ENSOANG00000015673	XRN2	100	86.639	Ornithorhynchus_anatinus
ENSCPBG00000023533	XRN2	100	85.208	ENSOCUG00000013468	XRN2	100	84.583	Oryctolagus_cuniculus
ENSCPBG00000023533	XRN2	98	70.954	ENSORLG00000017213	xrn2	97	75.230	Oryzias_latipes
ENSCPBG00000023533	XRN2	98	70.795	ENSORLG00020001824	xrn2	100	70.576	Oryzias_latipes_hni
ENSCPBG00000023533	XRN2	98	70.656	ENSORLG00015019747	xrn2	100	70.438	Oryzias_latipes_hsok
ENSCPBG00000023533	XRN2	100	69.534	ENSOMEG00000019820	xrn2	100	70.517	Oryzias_melastigma
ENSCPBG00000023533	XRN2	100	83.854	ENSOGAG00000001068	XRN2	100	83.333	Otolemur_garnettii
ENSCPBG00000023533	XRN2	99	84.632	ENSOARG00000004443	XRN2	100	84.098	Ovis_aries
ENSCPBG00000023533	XRN2	100	85.104	ENSPPAG00000033549	XRN2	100	84.479	Pan_paniscus
ENSCPBG00000023533	XRN2	100	85.208	ENSPPRG00000008732	XRN2	100	84.583	Panthera_pardus
ENSCPBG00000023533	XRN2	99	84.920	ENSPTIG00000015683	XRN2	97	84.278	Panthera_tigris_altaica
ENSCPBG00000023533	XRN2	100	85.104	ENSPTRG00000013308	XRN2	100	84.479	Pan_troglodytes
ENSCPBG00000023533	XRN2	100	85.104	ENSPANG00000018088	XRN2	100	84.479	Papio_anubis
ENSCPBG00000023533	XRN2	100	72.449	ENSPKIG00000016889	xrn2	100	72.857	Paramormyrops_kingsleyae
ENSCPBG00000023533	XRN2	82	96.094	ENSPSIG00000014666	XRN2	100	96.094	Pelodiscus_sinensis
ENSCPBG00000023533	XRN2	100	84.167	ENSPEMG00000000111	Xrn2	100	83.542	Peromyscus_maniculatus_bairdii
ENSCPBG00000023533	XRN2	100	70.256	ENSPFOG00000004182	xrn2	97	71.928	Poecilia_formosa
ENSCPBG00000023533	XRN2	89	75.494	ENSPLAG00000007351	xrn2	96	75.494	Poecilia_latipinna
ENSCPBG00000023533	XRN2	97	69.164	ENSPMEG00000011798	xrn2	96	70.740	Poecilia_mexicana
ENSCPBG00000023533	XRN2	90	75.230	ENSPREG00000012452	xrn2	100	73.119	Poecilia_reticulata
ENSCPBG00000023533	XRN2	100	84.688	ENSPPYG00000010755	XRN2	100	84.062	Pongo_abelii
ENSCPBG00000023533	XRN2	100	80.353	ENSPCAG00000011191	XRN2	100	79.730	Procavia_capensis
ENSCPBG00000023533	XRN2	100	77.500	ENSPCOG00000016468	XRN2	100	76.875	Propithecus_coquereli
ENSCPBG00000023533	XRN2	93	76.261	ENSPVAG00000004596	XRN2	93	75.074	Pteropus_vampyrus
ENSCPBG00000023533	XRN2	90	74.023	ENSPNYG00000001765	xrn2	97	73.908	Pundamilia_nyererei
ENSCPBG00000023533	XRN2	100	71.996	ENSPNAG00000010956	xrn2	99	71.865	Pygocentrus_nattereri
ENSCPBG00000023533	XRN2	100	84.167	ENSRNOG00000011785	Xrn2	100	84.167	Rattus_norvegicus
ENSCPBG00000023533	XRN2	86	87.820	ENSRBIG00000036193	XRN2	100	87.576	Rhinopithecus_bieti
ENSCPBG00000023533	XRN2	100	85.104	ENSRROG00000044400	XRN2	90	84.479	Rhinopithecus_roxellana
ENSCPBG00000023533	XRN2	64	54.444	YOR048C	RAT1	57	54.444	Saccharomyces_cerevisiae
ENSCPBG00000023533	XRN2	100	85.104	ENSSBOG00000021014	XRN2	100	84.479	Saimiri_boliviensis_boliviensis
ENSCPBG00000023533	XRN2	100	72.848	ENSSFOG00015001091	xrn2	100	72.718	Scleropages_formosus
ENSCPBG00000023533	XRN2	90	75.000	ENSSMAG00000007834	xrn2	100	70.101	Scophthalmus_maximus
ENSCPBG00000023533	XRN2	96	69.486	ENSSDUG00000012802	xrn2	99	72.976	Seriola_dumerili
ENSCPBG00000023533	XRN2	92	74.379	ENSSLDG00000021273	xrn2	99	74.379	Seriola_lalandi_dorsalis
ENSCPBG00000023533	XRN2	77	96.000	ENSSARG00000005859	-	69	96.000	Sorex_araneus
ENSCPBG00000023533	XRN2	98	87.418	ENSSPUG00000005485	XRN2	96	87.327	Sphenodon_punctatus
ENSCPBG00000023533	XRN2	100	71.093	ENSSPAG00000016027	xrn2	99	71.181	Stegastes_partitus
ENSCPBG00000023533	XRN2	100	84.688	ENSSSCG00000007109	XRN2	100	84.062	Sus_scrofa
ENSCPBG00000023533	XRN2	100	86.785	ENSTGUG00000007535	XRN2	100	86.785	Taeniopygia_guttata
ENSCPBG00000023533	XRN2	100	68.750	ENSTRUG00000015489	xrn2	93	71.676	Takifugu_rubripes
ENSCPBG00000023533	XRN2	100	69.512	ENSTNIG00000010712	xrn2	98	70.539	Tetraodon_nigroviridis
ENSCPBG00000023533	XRN2	100	83.958	ENSTBEG00000004119	XRN2	100	83.958	Tupaia_belangeri
ENSCPBG00000023533	XRN2	93	89.587	ENSTTRG00000009087	XRN2	93	89.228	Tursiops_truncatus
ENSCPBG00000023533	XRN2	100	85.417	ENSUAMG00000024634	XRN2	100	84.792	Ursus_americanus
ENSCPBG00000023533	XRN2	99	84.920	ENSUMAG00000004012	XRN2	95	84.278	Ursus_maritimus
ENSCPBG00000023533	XRN2	91	78.713	ENSVPAG00000010694	XRN2	84	91.262	Vicugna_pacos
ENSCPBG00000023533	XRN2	100	85.417	ENSVVUG00000012178	XRN2	100	84.792	Vulpes_vulpes
ENSCPBG00000023533	XRN2	100	76.891	ENSXETG00000023501	xrn2	100	77.409	Xenopus_tropicalis
ENSCPBG00000023533	XRN2	100	69.538	ENSXMAG00000000242	xrn2	92	79.805	Xiphophorus_maculatus