EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000023800 (Gene tree)
Gene ID: 101951737
Gene Symbol: -
Alias: LARK|RBM4A|ZCCHC21|ZCRB3A
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 79017 bases
Position: chrKK088199.1:7696278-7775294
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000034085	zf-CCHC	PF00098.23	2.6e-07	1	1
ENSCPBP00000034087	zf-CCHC	PF00098.23	2.7e-07	1	1
ENSCPBP00000034088	zf-CCHC	PF00098.23	2.7e-07	1	1
ENSCPBP00000034090	zf-CCHC	PF00098.23	5.4e-07	1	1
ENSCPBP00000034090	RRM_5	PF13893.6	4.7e-09	1	2
ENSCPBP00000034090	RRM_5	PF13893.6	4.7e-09	2	2
ENSCPBP00000034087	RRM_5	PF13893.6	1.2e-08	1	2
ENSCPBP00000034087	RRM_5	PF13893.6	1.2e-08	2	2
ENSCPBP00000034088	RRM_5	PF13893.6	1.2e-08	1	2
ENSCPBP00000034088	RRM_5	PF13893.6	1.2e-08	2	2
ENSCPBP00000034085	RRM_5	PF13893.6	1.9e-08	1	2
ENSCPBP00000034085	RRM_5	PF13893.6	1.9e-08	2	2
ENSCPBP00000034089	RRM_5	PF13893.6	6.6e-07	1	1
ENSCPBP00000034089	RRM_1	PF00076.22	5.3e-33	1	2
ENSCPBP00000034089	RRM_1	PF00076.22	5.3e-33	2	2
ENSCPBP00000034087	RRM_1	PF00076.22	7.6e-33	1	2
ENSCPBP00000034087	RRM_1	PF00076.22	7.6e-33	2	2
ENSCPBP00000034088	RRM_1	PF00076.22	7.6e-33	1	2
ENSCPBP00000034088	RRM_1	PF00076.22	7.6e-33	2	2
ENSCPBP00000034085	RRM_1	PF00076.22	7.9e-33	1	2
ENSCPBP00000034085	RRM_1	PF00076.22	7.9e-33	2	2
ENSCPBP00000034090	RRM_1	PF00076.22	9.7e-33	1	2
ENSCPBP00000034090	RRM_1	PF00076.22	9.7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000039983	-	2008	-	ENSCPBP00000034087	373 (aa)	XP_005308012	UPI000388DF61
ENSCPBT00000039988	-	1339	-	ENSCPBP00000034090	404 (aa)	-	-
ENSCPBT00000039981	-	2011	-	ENSCPBP00000034085	374 (aa)	XP_005308022	UPI0002C2D4E2
ENSCPBT00000039986	-	1156	XM_005307958	ENSCPBP00000034089	186 (aa)	XP_005308015	UPI0003890B92
ENSCPBT00000039984	-	1873	-	ENSCPBP00000034088	373 (aa)	XP_005308012	UPI000388DF61

Gene Model

Click here to download ENSCPBG00000023800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000023800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000023800	-	86	41.358	ENSCPBG00000023666	-	99	41.358
ENSCPBG00000023800	-	88	34.343	ENSCPBG00000018247	-	81	36.937
ENSCPBG00000023800	-	68	30.000	ENSCPBG00000022951	DAZAP1	52	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000023800	-	100	74.278	ENSG00000173933	RBM4	100	96.341	Homo_sapiens
ENSCPBG00000023800	-	100	74.474	ENSG00000173914	RBM4B	97	96.403	Homo_sapiens
ENSCPBG00000023800	-	99	51.832	ENSG00000248643	RBM14-RBM4	100	51.436	Homo_sapiens
ENSCPBG00000023800	-	100	73.560	ENSAMEG00000010914	RBM4	100	74.413	Ailuropoda_melanoleuca
ENSCPBG00000023800	-	100	75.789	ENSAMEG00000010906	RBM4B	100	75.853	Ailuropoda_melanoleuca
ENSCPBG00000023800	-	100	74.211	ENSANAG00000023478	RBM4B	97	96.403	Aotus_nancymaae
ENSCPBG00000023800	-	74	94.891	ENSANAG00000033986	-	83	94.891	Aotus_nancymaae
ENSCPBG00000023800	-	100	75.263	ENSBTAG00000000423	RBM4B	100	75.328	Bos_taurus
ENSCPBG00000023800	-	100	75.263	ENSBTAG00000031688	RBM4	100	75.328	Bos_taurus
ENSCPBG00000023800	-	100	74.211	ENSCJAG00000013666	RBM4B	97	96.403	Callithrix_jacchus
ENSCPBG00000023800	-	100	73.560	ENSCAFG00000012388	RBM4	100	74.413	Canis_familiaris
ENSCPBG00000023800	-	100	76.000	ENSCAFG00000012378	RBM4B	100	75.591	Canis_familiaris
ENSCPBG00000023800	-	100	76.000	ENSCAFG00020015519	RBM4B	100	75.591	Canis_lupus_dingo
ENSCPBG00000023800	-	100	73.560	ENSCAFG00020015515	RBM4	100	74.413	Canis_lupus_dingo
ENSCPBG00000023800	-	100	75.526	ENSCHIG00000008907	RBM4B	100	75.591	Capra_hircus
ENSCPBG00000023800	-	100	75.263	ENSCHIG00000020613	RBM4	100	75.328	Capra_hircus
ENSCPBG00000023800	-	77	78.632	ENSTSYG00000036168	-	94	78.632	Carlito_syrichta
ENSCPBG00000023800	-	67	62.109	ENSTSYG00000009580	RBM4B	96	62.257	Carlito_syrichta
ENSCPBG00000023800	-	100	75.198	ENSCAPG00000009570	RBM4B	100	75.263	Cavia_aperea
ENSCPBG00000023800	-	100	73.560	ENSCAPG00000016600	RBM4	100	94.406	Cavia_aperea
ENSCPBG00000023800	-	100	73.560	ENSCPOG00000013194	RBM4	100	94.406	Cavia_porcellus
ENSCPBG00000023800	-	100	75.198	ENSCPOG00000013689	RBM4B	100	75.263	Cavia_porcellus
ENSCPBG00000023800	-	100	74.474	ENSCCAG00000016501	RBM4B	97	96.403	Cebus_capucinus
ENSCPBG00000023800	-	75	70.504	ENSCCAG00000023319	-	100	69.154	Cebus_capucinus
ENSCPBG00000023800	-	77	90.909	ENSCCAG00000007508	-	100	90.909	Cebus_capucinus
ENSCPBG00000023800	-	100	74.474	ENSCATG00000035353	RBM4B	97	96.403	Cercocebus_atys
ENSCPBG00000023800	-	100	75.000	ENSCLAG00000015287	RBM4B	100	75.066	Chinchilla_lanigera
ENSCPBG00000023800	-	100	73.298	ENSCLAG00000014756	RBM4	100	94.406	Chinchilla_lanigera
ENSCPBG00000023800	-	100	74.474	ENSCSAG00000008361	RBM4B	100	75.328	Chlorocebus_sabaeus
ENSCPBG00000023800	-	100	75.526	ENSCHOG00000002892	RBM4B	100	75.591	Choloepus_hoffmanni
ENSCPBG00000023800	-	63	60.656	ENSCHOG00000009753	RBM14-RBM4	100	62.041	Choloepus_hoffmanni
ENSCPBG00000023800	-	100	74.474	ENSCANG00000021868	RBM4B	97	96.403	Colobus_angolensis_palliatus
ENSCPBG00000023800	-	100	71.842	ENSCGRG00001024693	Rbm4b	100	72.966	Cricetulus_griseus_chok1gshd
ENSCPBG00000023800	-	100	73.421	ENSCGRG00001016609	-	100	94.406	Cricetulus_griseus_chok1gshd
ENSCPBG00000023800	-	100	73.421	ENSCGRG00000010183	-	100	94.406	Cricetulus_griseus_crigri
ENSCPBG00000023800	-	100	71.842	ENSCGRG00000012112	Rbm4b	100	72.966	Cricetulus_griseus_crigri
ENSCPBG00000023800	-	100	75.000	ENSDNOG00000019500	-	100	74.803	Dasypus_novemcinctus
ENSCPBG00000023800	-	100	73.037	ENSDNOG00000032390	RBM4	100	73.890	Dasypus_novemcinctus
ENSCPBG00000023800	-	100	74.211	ENSDNOG00000045639	-	100	74.016	Dasypus_novemcinctus
ENSCPBG00000023800	-	100	73.936	ENSDORG00000029108	Rbm4b	100	74.607	Dipodomys_ordii
ENSCPBG00000023800	-	100	73.228	ENSDORG00000004538	-	100	93.007	Dipodomys_ordii
ENSCPBG00000023800	-	63	50.840	ENSETEG00000018142	-	100	51.899	Echinops_telfairi
ENSCPBG00000023800	-	100	75.789	ENSEASG00005005068	RBM4B	100	75.853	Equus_asinus_asinus
ENSCPBG00000023800	-	100	74.211	ENSEASG00005005064	RBM4	100	74.278	Equus_asinus_asinus
ENSCPBG00000023800	-	100	74.211	ENSECAG00000022940	RBM4	100	74.278	Equus_caballus
ENSCPBG00000023800	-	100	75.526	ENSECAG00000022987	RBM4B	100	75.591	Equus_caballus
ENSCPBG00000023800	-	100	73.298	ENSEEUG00000000058	RBM4B	100	73.890	Erinaceus_europaeus
ENSCPBG00000023800	-	100	75.526	ENSFCAG00000007394	RBM4B	97	96.403	Felis_catus
ENSCPBG00000023800	-	100	73.560	ENSFCAG00000029651	RBM4	100	93.706	Felis_catus
ENSCPBG00000023800	-	100	77.212	ENSFALG00000002073	-	100	77.807	Ficedula_albicollis
ENSCPBG00000023800	-	100	74.413	ENSFDAG00000005447	RBM4	100	94.406	Fukomys_damarensis
ENSCPBG00000023800	-	100	75.263	ENSFDAG00000015530	RBM4B	100	75.328	Fukomys_damarensis
ENSCPBG00000023800	-	78	85.926	ENSFDAG00000013661	-	96	89.683	Fukomys_damarensis
ENSCPBG00000023800	-	100	92.246	ENSGALG00000037946	-	100	92.246	Gallus_gallus
ENSCPBG00000023800	-	77	95.833	ENSGALG00000040489	-	88	95.833	Gallus_gallus
ENSCPBG00000023800	-	100	99.733	ENSGAGG00000008553	-	100	99.733	Gopherus_agassizii
ENSCPBG00000023800	-	100	74.474	ENSGGOG00000011698	RBM4B	97	96.403	Gorilla_gorilla
ENSCPBG00000023800	-	83	71.429	ENSGGOG00000043023	-	98	77.372	Gorilla_gorilla
ENSCPBG00000023800	-	79	45.714	ENSHGLG00000000117	-	97	55.065	Heterocephalus_glaber_female
ENSCPBG00000023800	-	100	73.560	ENSHGLG00000009991	RBM4	100	94.406	Heterocephalus_glaber_female
ENSCPBG00000023800	-	100	63.158	ENSHGLG00000002853	-	100	63.517	Heterocephalus_glaber_female
ENSCPBG00000023800	-	100	75.526	ENSHGLG00000016412	-	100	75.591	Heterocephalus_glaber_female
ENSCPBG00000023800	-	100	74.737	ENSHGLG00100003978	-	100	74.803	Heterocephalus_glaber_male
ENSCPBG00000023800	-	74	86.957	ENSHGLG00100020033	-	99	64.560	Heterocephalus_glaber_male
ENSCPBG00000023800	-	77	94.406	ENSHGLG00100003854	RBM4	100	94.406	Heterocephalus_glaber_male
ENSCPBG00000023800	-	100	75.000	ENSSTOG00000011226	RBM4B	100	75.328	Ictidomys_tridecemlineatus
ENSCPBG00000023800	-	100	73.298	ENSSTOG00000022811	RBM4	100	93.706	Ictidomys_tridecemlineatus
ENSCPBG00000023800	-	100	71.467	ENSJJAG00000020870	Rbm4b	100	72.703	Jaculus_jaculus
ENSCPBG00000023800	-	72	73.684	ENSJJAG00000003168	-	92	72.388	Jaculus_jaculus
ENSCPBG00000023800	-	80	97.101	ENSLAFG00000002285	RBM4B	100	73.753	Loxodonta_africana
ENSCPBG00000023800	-	100	73.810	ENSLAFG00000028147	-	100	74.935	Loxodonta_africana
ENSCPBG00000023800	-	100	74.474	ENSMFAG00000033927	RBM4B	97	97.101	Macaca_fascicularis
ENSCPBG00000023800	-	100	74.474	ENSMNEG00000043371	RBM4B	97	96.403	Macaca_nemestrina
ENSCPBG00000023800	-	100	74.474	ENSMLEG00000028563	RBM4B	97	97.101	Mandrillus_leucophaeus
ENSCPBG00000023800	-	100	72.368	ENSMAUG00000017027	Rbm4b	100	73.228	Mesocricetus_auratus
ENSCPBG00000023800	-	100	75.000	ENSMICG00000003820	RBM4B	97	96.403	Microcebus_murinus
ENSCPBG00000023800	-	75	93.571	ENSMICG00000047975	-	97	93.571	Microcebus_murinus
ENSCPBG00000023800	-	77	89.510	ENSMICG00000003817	-	100	89.510	Microcebus_murinus
ENSCPBG00000023800	-	100	72.105	ENSMOCG00000001835	Rbm4b	100	73.228	Microtus_ochrogaster
ENSCPBG00000023800	-	100	73.421	ENSMODG00000008056	-	100	74.026	Monodelphis_domestica
ENSCPBG00000023800	-	100	73.333	MGP_CAROLIEiJ_G0022516	-	100	94.406	Mus_caroli
ENSCPBG00000023800	-	99	50.266	MGP_CAROLIEiJ_G0022514	-	100	50.785	Mus_caroli
ENSCPBG00000023800	-	100	73.158	MGP_CAROLIEiJ_G0022515	Rbm4b	100	74.278	Mus_caroli
ENSCPBG00000023800	-	100	73.067	ENSMUSG00000094936	Rbm4	100	97.093	Mus_musculus
ENSCPBG00000023800	-	100	73.067	ENSMUSG00000096370	Gm21992	100	72.441	Mus_musculus
ENSCPBG00000023800	-	100	72.895	ENSMUSG00000033760	Rbm4b	99	92.053	Mus_musculus
ENSCPBG00000023800	-	100	73.333	MGP_PahariEiJ_G0014011	-	100	73.491	Mus_pahari
ENSCPBG00000023800	-	100	72.895	MGP_PahariEiJ_G0014012	Rbm4b	100	74.016	Mus_pahari
ENSCPBG00000023800	-	100	73.333	MGP_PahariEiJ_G0014013	-	100	94.406	Mus_pahari
ENSCPBG00000023800	-	100	54.896	MGP_SPRETEiJ_G0023430	-	100	55.394	Mus_spretus
ENSCPBG00000023800	-	100	54.896	MGP_SPRETEiJ_G0023428	-	96	54.971	Mus_spretus
ENSCPBG00000023800	-	100	60.066	MGP_SPRETEiJ_G0023429	-	100	61.513	Mus_spretus
ENSCPBG00000023800	-	100	75.789	ENSMPUG00000003450	RBM4B	100	75.853	Mustela_putorius_furo
ENSCPBG00000023800	-	100	73.560	ENSMPUG00000003443	RBM4	100	74.413	Mustela_putorius_furo
ENSCPBG00000023800	-	100	73.421	ENSMLUG00000001290	RBM4B	100	73.947	Myotis_lucifugus
ENSCPBG00000023800	-	99	73.158	ENSMLUG00000004076	RBM4	95	75.066	Myotis_lucifugus
ENSCPBG00000023800	-	100	73.158	ENSNGAG00000016292	Rbm4b	100	74.016	Nannospalax_galili
ENSCPBG00000023800	-	100	74.278	ENSNLEG00000035021	RBM4	98	96.377	Nomascus_leucogenys
ENSCPBG00000023800	-	100	73.947	ENSNLEG00000006213	RBM4B	97	96.403	Nomascus_leucogenys
ENSCPBG00000023800	-	63	61.066	ENSMEUG00000005739	-	100	62.041	Notamacropus_eugenii
ENSCPBG00000023800	-	100	74.016	ENSMEUG00000001445	-	100	74.607	Notamacropus_eugenii
ENSCPBG00000023800	-	100	74.737	ENSOPRG00000009158	RBM4B	100	75.328	Ochotona_princeps
ENSCPBG00000023800	-	100	74.084	ENSOPRG00000009149	RBM4	100	74.674	Ochotona_princeps
ENSCPBG00000023800	-	77	73.427	ENSODEG00000006635	-	100	73.427	Octodon_degus
ENSCPBG00000023800	-	100	62.500	ENSODEG00000001866	-	100	62.766	Octodon_degus
ENSCPBG00000023800	-	77	93.007	ENSODEG00000020039	-	100	93.007	Octodon_degus
ENSCPBG00000023800	-	100	75.263	ENSODEG00000017696	-	100	75.328	Octodon_degus
ENSCPBG00000023800	-	77	90.909	ENSODEG00000019143	-	100	90.909	Octodon_degus
ENSCPBG00000023800	-	100	73.867	ENSOANG00000011036	-	100	73.067	Ornithorhynchus_anatinus
ENSCPBG00000023800	-	74	97.101	ENSOANG00000003143	-	85	68.338	Ornithorhynchus_anatinus
ENSCPBG00000023800	-	100	73.298	ENSOCUG00000004731	RBM4	100	74.151	Oryctolagus_cuniculus
ENSCPBG00000023800	-	100	75.526	ENSOCUG00000006695	LARK	100	75.591	Oryctolagus_cuniculus
ENSCPBG00000023800	-	100	75.526	ENSOGAG00000015648	RBM4B	100	75.591	Otolemur_garnettii
ENSCPBG00000023800	-	100	73.890	ENSOGAG00000015647	RBM4	100	73.629	Otolemur_garnettii
ENSCPBG00000023800	-	100	75.198	ENSOARG00000007700	RBM4	100	74.406	Ovis_aries
ENSCPBG00000023800	-	100	74.803	ENSOARG00000007759	RBM4B	100	74.869	Ovis_aries
ENSCPBG00000023800	-	100	74.474	ENSPPAG00000015125	RBM4B	97	96.403	Pan_paniscus
ENSCPBG00000023800	-	100	75.526	ENSPPRG00000003388	RBM4B	97	96.403	Panthera_pardus
ENSCPBG00000023800	-	100	73.560	ENSPPRG00000003533	RBM4	100	93.706	Panthera_pardus
ENSCPBG00000023800	-	77	94.406	ENSPTIG00000016180	RBM4	100	94.406	Panthera_tigris_altaica
ENSCPBG00000023800	-	100	75.526	ENSPTIG00000015426	RBM4B	97	96.403	Panthera_tigris_altaica
ENSCPBG00000023800	-	100	74.474	ENSPTRG00000003935	RBM4B	97	96.403	Pan_troglodytes
ENSCPBG00000023800	-	100	74.474	ENSPANG00000020672	RBM4B	97	96.403	Papio_anubis
ENSCPBG00000023800	-	100	96.524	ENSPSIG00000003430	-	100	96.524	Pelodiscus_sinensis
ENSCPBG00000023800	-	80	97.667	ENSPSIG00000003477	-	97	97.667	Pelodiscus_sinensis
ENSCPBG00000023800	-	100	73.158	ENSPEMG00000009144	Rbm4b	100	74.278	Peromyscus_maniculatus_bairdii
ENSCPBG00000023800	-	100	73.228	ENSPPYG00000003012	RBM4	100	72.775	Pongo_abelii
ENSCPBG00000023800	-	100	74.474	ENSPPYG00000003010	RBM4B	100	75.328	Pongo_abelii
ENSCPBG00000023800	-	100	74.005	ENSPCAG00000003393	-	100	74.869	Procavia_capensis
ENSCPBG00000023800	-	100	75.263	ENSPCOG00000027885	RBM4B	97	96.403	Propithecus_coquereli
ENSCPBG00000023800	-	100	76.000	ENSPVAG00000010487	RBM4B	100	75.591	Pteropus_vampyrus
ENSCPBG00000023800	-	100	73.822	ENSPVAG00000010486	RBM4	100	74.674	Pteropus_vampyrus
ENSCPBG00000023800	-	100	73.421	ENSRNOG00000061795	Rbm4b	100	74.541	Rattus_norvegicus
ENSCPBG00000023800	-	100	74.869	ENSRNOG00000050741	Rbm4	100	94.406	Rattus_norvegicus
ENSCPBG00000023800	-	100	74.474	ENSRBIG00000019394	RBM4B	97	96.403	Rhinopithecus_bieti
ENSCPBG00000023800	-	100	74.474	ENSRROG00000032850	RBM4B	97	96.403	Rhinopithecus_roxellana
ENSCPBG00000023800	-	78	92.414	ENSRROG00000032796	-	90	96.479	Rhinopithecus_roxellana
ENSCPBG00000023800	-	100	73.947	ENSSBOG00000034474	RBM4B	97	95.683	Saimiri_boliviensis_boliviensis
ENSCPBG00000023800	-	100	72.105	ENSSHAG00000008386	-	100	72.178	Sarcophilus_harrisii
ENSCPBG00000023800	-	100	75.200	ENSSARG00000010710	RBM4B	100	74.803	Sorex_araneus
ENSCPBG00000023800	-	100	73.560	ENSSSCG00000032437	RBM4	100	74.413	Sus_scrofa
ENSCPBG00000023800	-	74	98.551	ENSTGUG00000016779	-	94	90.785	Taeniopygia_guttata
ENSCPBG00000023800	-	100	73.684	ENSTBEG00000003748	RBM4B	100	74.278	Tupaia_belangeri
ENSCPBG00000023800	-	74	96.000	ENSTBEG00000003727	-	68	88.263	Tupaia_belangeri
ENSCPBG00000023800	-	100	73.298	ENSTTRG00000011164	RBM4	100	74.413	Tursiops_truncatus
ENSCPBG00000023800	-	100	75.526	ENSTTRG00000011166	RBM4B	100	75.591	Tursiops_truncatus
ENSCPBG00000023800	-	100	76.053	ENSUAMG00000004745	RBM4B	100	76.115	Ursus_americanus
ENSCPBG00000023800	-	100	73.560	ENSUAMG00000014882	RBM4	100	93.706	Ursus_americanus
ENSCPBG00000023800	-	77	93.706	ENSUMAG00000011738	-	100	93.706	Ursus_maritimus
ENSCPBG00000023800	-	100	74.005	ENSVPAG00000001949	RBM4	100	74.271	Vicugna_pacos
ENSCPBG00000023800	-	100	75.526	ENSVPAG00000001950	RBM4B	100	75.591	Vicugna_pacos
ENSCPBG00000023800	-	100	76.000	ENSVVUG00000010619	RBM4B	100	75.591	Vulpes_vulpes
ENSCPBG00000023800	-	78	83.562	ENSVVUG00000011717	-	99	83.562	Vulpes_vulpes
ENSCPBG00000023800	-	100	73.037	ENSVVUG00000010622	RBM4	100	73.890	Vulpes_vulpes