EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000023916 (Gene tree)
Gene ID: 101935119
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 10226 bases
Position: chrKK088216.1:1122102-1132327
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000034275	Calreticulin	PF00262.18	3.7e-82	1	2
ENSCPBP00000034275	Calreticulin	PF00262.18	3.7e-82	2	2
ENSCPBP00000034268	Calreticulin	PF00262.18	4e-82	1	2
ENSCPBP00000034268	Calreticulin	PF00262.18	4e-82	2	2
ENSCPBP00000034267	Calreticulin	PF00262.18	4.9e-82	1	2
ENSCPBP00000034267	Calreticulin	PF00262.18	4.9e-82	2	2
ENSCPBP00000034294	Calreticulin	PF00262.18	1.1e-79	1	2
ENSCPBP00000034294	Calreticulin	PF00262.18	1.1e-79	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000040209	-	1344	-	ENSCPBP00000034268	447 (aa)	-	-
ENSCPBT00000040208	-	1401	-	ENSCPBP00000034267	466 (aa)	-	-
ENSCPBT00000040237	-	2163	-	ENSCPBP00000034294	370 (aa)	-	-
ENSCPBT00000040216	-	1179	-	ENSCPBP00000034275	392 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000023916's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic04141	Protein processing in endoplasmic reticulum	KEGG
cpic04145	Phagosome	KEGG
cpic05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000023916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000023916	-	78	40.698	ENSCPBG00000027583	CLGN	54	40.988
ENSCPBG00000023916	-	79	40.058	ENSCPBG00000009538	CANX	58	40.173
ENSCPBG00000023916	-	92	65.192	ENSCPBG00000014982	CALR3	92	61.680

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000023916	-	89	84.545	ENSAMXG00000018577	-	85	80.278	Astyanax_mexicanus
ENSCPBG00000023916	-	85	87.619	ENSCAFG00000017093	CALR	89	82.645	Canis_familiaris
ENSCPBG00000023916	-	85	81.529	ENSDARG00000103979	calr3a	87	76.164	Danio_rerio
ENSCPBG00000023916	-	89	74.695	FBgn0005585	Calr	83	72.024	Drosophila_melanogaster
ENSCPBG00000023916	-	77	36.232	FBgn0264077	Cnx14D	53	36.232	Drosophila_melanogaster
ENSCPBG00000023916	-	90	73.952	ENSEBUG00000008568	calr3a	86	69.565	Eptatretus_burgeri
ENSCPBG00000023916	-	84	80.259	ENSELUG00000008294	-	80	80.782	Esox_lucius
ENSCPBG00000023916	-	85	82.857	ENSFHEG00000000123	-	71	83.893	Fundulus_heteroclitus
ENSCPBG00000023916	-	85	84.395	ENSMAMG00000003716	-	84	79.063	Mastacembelus_armatus
ENSCPBG00000023916	-	85	83.492	ENSMMOG00000020031	-	83	77.112	Mola_mola
ENSCPBG00000023916	-	85	88.254	ENSMLUG00000012776	-	87	84.022	Myotis_lucifugus
ENSCPBG00000023916	-	85	72.293	ENSORLG00000017171	-	84	68.320	Oryzias_latipes
ENSCPBG00000023916	-	85	83.758	ENSOMEG00000010424	-	85	78.512	Oryzias_melastigma
ENSCPBG00000023916	-	79	40.058	ENSPSIG00000003895	-	60	40.058	Pelodiscus_sinensis
ENSCPBG00000023916	-	78	38.728	ENSPSIG00000009344	-	54	40.116	Pelodiscus_sinensis
ENSCPBG00000023916	-	100	95.467	ENSPSIG00000012928	-	100	95.663	Pelodiscus_sinensis
ENSCPBG00000023916	-	85	83.758	ENSPNAG00000016813	-	86	77.686	Pygocentrus_nattereri
ENSCPBG00000023916	-	90	77.108	ENSSMAG00000005047	calr3a	76	78.667	Scophthalmus_maximus
ENSCPBG00000023916	-	78	40.634	ENSSLDG00000020527	-	61	40.634	Seriola_lalandi_dorsalis
ENSCPBG00000023916	-	78	40.401	ENSTRUG00000003449	-	50	39.247	Takifugu_rubripes
ENSCPBG00000023916	-	85	85.032	ENSTRUG00000004597	-	100	72.622	Takifugu_rubripes
ENSCPBG00000023916	-	85	88.571	ENSXETG00000007937	calr	86	83.008	Xenopus_tropicalis