EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000024239 (Gene tree)
Gene ID: 101945059
Gene Symbol: EDC3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 57393 bases
Position: chrKK083123.1:536950-594342
Accession: 26114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000034743	FDF	PF09532.10	9e-15	1	1
ENSCPBP00000034745	FDF	PF09532.10	9e-15	1	1
ENSCPBP00000034743	LSM14	PF12701.7	2.4e-09	1	1
ENSCPBP00000034745	LSM14	PF12701.7	2.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000040775	EDC3-201	1717	-	ENSCPBP00000034743	508 (aa)	XP_005309278	UPI000388C4D5
ENSCPBT00000040777	EDC3-202	1723	-	ENSCPBP00000034745	508 (aa)	XP_005309278	UPI000388C4D5

Gene Model

Click here to download ENSCPBG00000024239's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000024239's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000024239	EDC3	100	89.173	ENSG00000179151	EDC3	100	98.148	Homo_sapiens
ENSCPBG00000024239	EDC3	100	70.392	ENSAPOG00000010791	edc3	100	70.392	Acanthochromis_polyacanthus
ENSCPBG00000024239	EDC3	99	56.335	ENSAPOG00000008655	EDC3	99	56.335	Acanthochromis_polyacanthus
ENSCPBG00000024239	EDC3	100	89.173	ENSAMEG00000008963	EDC3	100	89.173	Ailuropoda_melanoleuca
ENSCPBG00000024239	EDC3	100	69.155	ENSACIG00000017751	edc3	100	69.352	Amphilophus_citrinellus
ENSCPBG00000024239	EDC3	99	60.039	ENSACIG00000005330	EDC3	99	60.039	Amphilophus_citrinellus
ENSCPBG00000024239	EDC3	100	70.392	ENSAOCG00000005431	edc3	100	70.392	Amphiprion_ocellaris
ENSCPBG00000024239	EDC3	99	58.949	ENSAOCG00000009103	-	99	58.949	Amphiprion_ocellaris
ENSCPBG00000024239	EDC3	99	58.674	ENSAPEG00000007841	EDC3	99	58.674	Amphiprion_percula
ENSCPBG00000024239	EDC3	100	70.392	ENSAPEG00000000968	edc3	100	70.392	Amphiprion_percula
ENSCPBG00000024239	EDC3	100	70.923	ENSATEG00000015505	edc3	100	70.923	Anabas_testudineus
ENSCPBG00000024239	EDC3	100	57.308	ENSATEG00000004205	-	100	57.308	Anabas_testudineus
ENSCPBG00000024239	EDC3	90	92.747	ENSAPLG00000008957	EDC3	100	92.747	Anas_platyrhynchos
ENSCPBG00000024239	EDC3	78	88.161	ENSACAG00000000460	-	100	88.161	Anolis_carolinensis
ENSCPBG00000024239	EDC3	100	89.370	ENSANAG00000024078	EDC3	100	89.370	Aotus_nancymaae
ENSCPBG00000024239	EDC3	99	58.789	ENSACLG00000018776	-	99	58.789	Astatotilapia_calliptera
ENSCPBG00000024239	EDC3	100	68.762	ENSACLG00000007232	edc3	100	68.762	Astatotilapia_calliptera
ENSCPBG00000024239	EDC3	100	71.512	ENSAMXG00000001589	edc3	100	71.512	Astyanax_mexicanus
ENSCPBG00000024239	EDC3	100	89.173	ENSBTAG00000007308	EDC3	100	89.173	Bos_taurus
ENSCPBG00000024239	EDC3	100	89.173	ENSCJAG00000017681	EDC3	100	89.173	Callithrix_jacchus
ENSCPBG00000024239	EDC3	100	88.583	ENSCAFG00000017935	EDC3	100	88.583	Canis_familiaris
ENSCPBG00000024239	EDC3	100	88.583	ENSCAFG00020003909	EDC3	100	88.583	Canis_lupus_dingo
ENSCPBG00000024239	EDC3	100	89.370	ENSCHIG00000023658	EDC3	100	89.370	Capra_hircus
ENSCPBG00000024239	EDC3	100	89.764	ENSTSYG00000004822	EDC3	100	89.764	Carlito_syrichta
ENSCPBG00000024239	EDC3	100	88.189	ENSCPOG00000015595	EDC3	100	88.189	Cavia_porcellus
ENSCPBG00000024239	EDC3	100	89.370	ENSCCAG00000021663	EDC3	100	89.370	Cebus_capucinus
ENSCPBG00000024239	EDC3	100	89.370	ENSCATG00000037511	EDC3	100	89.370	Cercocebus_atys
ENSCPBG00000024239	EDC3	100	87.992	ENSCLAG00000005700	EDC3	100	87.992	Chinchilla_lanigera
ENSCPBG00000024239	EDC3	100	89.370	ENSCSAG00000014239	EDC3	100	89.370	Chlorocebus_sabaeus
ENSCPBG00000024239	EDC3	100	38.224	ENSCING00000022142	-	99	38.372	Ciona_intestinalis
ENSCPBG00000024239	EDC3	100	89.370	ENSCANG00000028699	EDC3	100	89.370	Colobus_angolensis_palliatus
ENSCPBG00000024239	EDC3	100	89.370	ENSCGRG00001013874	Edc3	100	89.370	Cricetulus_griseus_chok1gshd
ENSCPBG00000024239	EDC3	100	89.370	ENSCGRG00000011885	Edc3	100	89.370	Cricetulus_griseus_crigri
ENSCPBG00000024239	EDC3	99	70.669	ENSCSEG00000012996	edc3	99	70.669	Cynoglossus_semilaevis
ENSCPBG00000024239	EDC3	100	69.352	ENSCVAG00000008023	edc3	100	69.352	Cyprinodon_variegatus
ENSCPBG00000024239	EDC3	99	69.727	ENSDARG00000051931	edc3	99	69.727	Danio_rerio
ENSCPBG00000024239	EDC3	100	77.907	ENSDNOG00000030661	EDC3	100	77.907	Dasypus_novemcinctus
ENSCPBG00000024239	EDC3	64	96.296	ENSETEG00000002398	-	64	96.296	Echinops_telfairi
ENSCPBG00000024239	EDC3	100	89.173	ENSEASG00005005071	EDC3	100	89.173	Equus_asinus_asinus
ENSCPBG00000024239	EDC3	100	89.173	ENSECAG00000017994	EDC3	100	89.173	Equus_caballus
ENSCPBG00000024239	EDC3	100	63.281	ENSELUG00000007607	EDC3	100	63.281	Esox_lucius
ENSCPBG00000024239	EDC3	100	66.862	ENSELUG00000005794	edc3	100	66.862	Esox_lucius
ENSCPBG00000024239	EDC3	100	88.976	ENSFCAG00000002014	EDC3	100	88.976	Felis_catus
ENSCPBG00000024239	EDC3	98	88.577	ENSFALG00000004543	EDC3	96	88.577	Ficedula_albicollis
ENSCPBG00000024239	EDC3	100	87.795	ENSFDAG00000012582	EDC3	100	87.795	Fukomys_damarensis
ENSCPBG00000024239	EDC3	100	70.334	ENSFHEG00000009375	edc3	100	70.334	Fundulus_heteroclitus
ENSCPBG00000024239	EDC3	100	68.945	ENSGMOG00000002715	edc3	100	68.945	Gadus_morhua
ENSCPBG00000024239	EDC3	100	93.701	ENSGALG00000040181	EDC3	100	93.701	Gallus_gallus
ENSCPBG00000024239	EDC3	100	67.976	ENSGAFG00000014433	edc3	100	67.843	Gambusia_affinis
ENSCPBG00000024239	EDC3	99	56.140	ENSGACG00000014671	EDC3	99	56.140	Gasterosteus_aculeatus
ENSCPBG00000024239	EDC3	100	68.959	ENSGACG00000009783	edc3	100	68.959	Gasterosteus_aculeatus
ENSCPBG00000024239	EDC3	100	99.016	ENSGAGG00000023477	EDC3	100	99.016	Gopherus_agassizii
ENSCPBG00000024239	EDC3	100	89.370	ENSGGOG00000003552	EDC3	100	89.370	Gorilla_gorilla
ENSCPBG00000024239	EDC3	99	58.789	ENSHBUG00000020817	EDC3	99	58.789	Haplochromis_burtoni
ENSCPBG00000024239	EDC3	100	68.762	ENSHBUG00000003635	edc3	100	68.762	Haplochromis_burtoni
ENSCPBG00000024239	EDC3	100	67.123	ENSHCOG00000016834	edc3	100	68.689	Hippocampus_comes
ENSCPBG00000024239	EDC3	99	70.097	ENSIPUG00000005695	edc3	100	70.097	Ictalurus_punctatus
ENSCPBG00000024239	EDC3	100	89.567	ENSSTOG00000013936	EDC3	100	89.567	Ictidomys_tridecemlineatus
ENSCPBG00000024239	EDC3	100	88.780	ENSJJAG00000008074	Edc3	100	88.780	Jaculus_jaculus
ENSCPBG00000024239	EDC3	100	70.138	ENSKMAG00000001243	edc3	100	70.138	Kryptolebias_marmoratus
ENSCPBG00000024239	EDC3	99	56.522	ENSKMAG00000001987	EDC3	99	56.522	Kryptolebias_marmoratus
ENSCPBG00000024239	EDC3	100	69.608	ENSLBEG00000013435	edc3	99	69.608	Labrus_bergylta
ENSCPBG00000024239	EDC3	100	58.414	ENSLBEG00000017984	EDC3	100	58.414	Labrus_bergylta
ENSCPBG00000024239	EDC3	100	79.223	ENSLACG00000014149	EDC3	100	79.223	Latimeria_chalumnae
ENSCPBG00000024239	EDC3	100	68.226	ENSLOCG00000014625	edc3	100	68.677	Lepisosteus_oculatus
ENSCPBG00000024239	EDC3	100	88.583	ENSLAFG00000002992	EDC3	100	88.583	Loxodonta_africana
ENSCPBG00000024239	EDC3	100	88.976	ENSMFAG00000043074	EDC3	100	88.976	Macaca_fascicularis
ENSCPBG00000024239	EDC3	100	88.976	ENSMMUG00000011071	EDC3	100	88.976	Macaca_mulatta
ENSCPBG00000024239	EDC3	100	88.976	ENSMNEG00000035316	EDC3	100	88.976	Macaca_nemestrina
ENSCPBG00000024239	EDC3	100	89.370	ENSMLEG00000030372	EDC3	100	89.370	Mandrillus_leucophaeus
ENSCPBG00000024239	EDC3	100	57.782	ENSMAMG00000005423	-	100	57.782	Mastacembelus_armatus
ENSCPBG00000024239	EDC3	100	69.941	ENSMAMG00000000505	edc3	100	69.941	Mastacembelus_armatus
ENSCPBG00000024239	EDC3	99	58.984	ENSMZEG00005005654	EDC3	99	58.984	Maylandia_zebra
ENSCPBG00000024239	EDC3	100	68.762	ENSMZEG00005004892	edc3	100	68.762	Maylandia_zebra
ENSCPBG00000024239	EDC3	100	93.110	ENSMGAG00000002617	EDC3	100	93.110	Meleagris_gallopavo
ENSCPBG00000024239	EDC3	100	89.370	ENSMICG00000043190	EDC3	100	89.370	Microcebus_murinus
ENSCPBG00000024239	EDC3	100	88.976	ENSMOCG00000016205	Edc3	100	88.976	Microtus_ochrogaster
ENSCPBG00000024239	EDC3	99	70.334	ENSMMOG00000012278	edc3	99	70.472	Mola_mola
ENSCPBG00000024239	EDC3	100	91.142	ENSMODG00000009442	EDC3	100	91.142	Monodelphis_domestica
ENSCPBG00000024239	EDC3	100	70.334	ENSMALG00000008658	edc3	100	70.334	Monopterus_albus
ENSCPBG00000024239	EDC3	100	88.583	MGP_CAROLIEiJ_G0032280	Edc3	100	96.923	Mus_caroli
ENSCPBG00000024239	EDC3	100	88.583	ENSMUSG00000038957	Edc3	100	96.923	Mus_musculus
ENSCPBG00000024239	EDC3	100	88.780	MGP_PahariEiJ_G0015146	Edc3	100	96.923	Mus_pahari
ENSCPBG00000024239	EDC3	100	88.780	MGP_SPRETEiJ_G0033420	Edc3	100	96.923	Mus_spretus
ENSCPBG00000024239	EDC3	100	89.764	ENSMPUG00000017293	EDC3	100	89.764	Mustela_putorius_furo
ENSCPBG00000024239	EDC3	100	88.627	ENSMLUG00000016382	EDC3	100	88.627	Myotis_lucifugus
ENSCPBG00000024239	EDC3	100	88.189	ENSNGAG00000010923	Edc3	100	88.189	Nannospalax_galili
ENSCPBG00000024239	EDC3	100	68.762	ENSNBRG00000002434	edc3	100	68.762	Neolamprologus_brichardi
ENSCPBG00000024239	EDC3	99	58.789	ENSNBRG00000007881	EDC3	99	58.789	Neolamprologus_brichardi
ENSCPBG00000024239	EDC3	100	79.724	ENSNLEG00000014577	EDC3	100	79.724	Nomascus_leucogenys
ENSCPBG00000024239	EDC3	100	90.551	ENSMEUG00000009077	EDC3	100	90.551	Notamacropus_eugenii
ENSCPBG00000024239	EDC3	79	98.148	ENSOPRG00000009540	-	79	98.148	Ochotona_princeps
ENSCPBG00000024239	EDC3	100	68.959	ENSONIG00000008434	edc3	100	68.959	Oreochromis_niloticus
ENSCPBG00000024239	EDC3	99	60.429	ENSONIG00000002932	-	99	60.429	Oreochromis_niloticus
ENSCPBG00000024239	EDC3	78	86.902	ENSOCUG00000017740	EDC3	86	86.902	Oryctolagus_cuniculus
ENSCPBG00000024239	EDC3	99	56.863	ENSORLG00000014399	-	98	57.227	Oryzias_latipes
ENSCPBG00000024239	EDC3	100	68.566	ENSORLG00000004883	edc3	100	68.566	Oryzias_latipes
ENSCPBG00000024239	EDC3	99	57.227	ENSORLG00020019446	-	99	57.227	Oryzias_latipes_hni
ENSCPBG00000024239	EDC3	100	68.555	ENSORLG00020012262	edc3	100	68.555	Oryzias_latipes_hni
ENSCPBG00000024239	EDC3	99	56.667	ENSORLG00015017635	-	95	56.836	Oryzias_latipes_hsok
ENSCPBG00000024239	EDC3	100	68.359	ENSORLG00015005634	edc3	100	68.359	Oryzias_latipes_hsok
ENSCPBG00000024239	EDC3	100	69.922	ENSOMEG00000014026	edc3	100	69.922	Oryzias_melastigma
ENSCPBG00000024239	EDC3	99	56.863	ENSOMEG00000017354	EDC3	99	56.863	Oryzias_melastigma
ENSCPBG00000024239	EDC3	100	89.764	ENSOGAG00000014441	EDC3	100	89.764	Otolemur_garnettii
ENSCPBG00000024239	EDC3	100	88.605	ENSOARG00000003476	EDC3	100	88.998	Ovis_aries
ENSCPBG00000024239	EDC3	100	89.370	ENSPPAG00000040143	EDC3	100	89.370	Pan_paniscus
ENSCPBG00000024239	EDC3	100	89.173	ENSPPRG00000006257	EDC3	100	89.173	Panthera_pardus
ENSCPBG00000024239	EDC3	100	89.173	ENSPTIG00000017424	EDC3	100	89.173	Panthera_tigris_altaica
ENSCPBG00000024239	EDC3	100	89.370	ENSPTRG00000007279	EDC3	100	89.370	Pan_troglodytes
ENSCPBG00000024239	EDC3	100	89.370	ENSPANG00000015997	EDC3	100	89.370	Papio_anubis
ENSCPBG00000024239	EDC3	99	66.277	ENSPKIG00000019810	EDC3	99	66.277	Paramormyrops_kingsleyae
ENSCPBG00000024239	EDC3	100	68.555	ENSPKIG00000004416	edc3	100	69.531	Paramormyrops_kingsleyae
ENSCPBG00000024239	EDC3	100	90.945	ENSPSIG00000008474	EDC3	96	96.154	Pelodiscus_sinensis
ENSCPBG00000024239	EDC3	100	67.906	ENSPMGG00000007223	edc3	100	67.906	Periophthalmus_magnuspinnatus
ENSCPBG00000024239	EDC3	100	89.173	ENSPEMG00000015260	Edc3	100	89.173	Peromyscus_maniculatus_bairdii
ENSCPBG00000024239	EDC3	100	90.748	ENSPCIG00000006276	EDC3	70	90.748	Phascolarctos_cinereus
ENSCPBG00000024239	EDC3	100	68.677	ENSPFOG00000012204	edc3	100	68.677	Poecilia_formosa
ENSCPBG00000024239	EDC3	100	68.677	ENSPLAG00000014420	edc3	100	68.677	Poecilia_latipinna
ENSCPBG00000024239	EDC3	100	68.677	ENSPMEG00000023289	edc3	100	68.677	Poecilia_mexicana
ENSCPBG00000024239	EDC3	100	68.959	ENSPREG00000016022	edc3	100	68.959	Poecilia_reticulata
ENSCPBG00000024239	EDC3	100	88.189	ENSPPYG00000006642	EDC3	100	88.189	Pongo_abelii
ENSCPBG00000024239	EDC3	88	98.148	ENSPCAG00000002802	EDC3	88	98.148	Procavia_capensis
ENSCPBG00000024239	EDC3	100	89.173	ENSPCOG00000013364	EDC3	100	89.173	Propithecus_coquereli
ENSCPBG00000024239	EDC3	100	88.583	ENSPVAG00000014733	EDC3	100	88.583	Pteropus_vampyrus
ENSCPBG00000024239	EDC3	99	58.789	ENSPNYG00000009669	EDC3	99	58.789	Pundamilia_nyererei
ENSCPBG00000024239	EDC3	100	68.762	ENSPNYG00000021797	edc3	100	68.762	Pundamilia_nyererei
ENSCPBG00000024239	EDC3	100	70.463	ENSPNAG00000019657	edc3	100	70.463	Pygocentrus_nattereri
ENSCPBG00000024239	EDC3	99	89.109	ENSRNOG00000019579	Edc3	99	89.109	Rattus_norvegicus
ENSCPBG00000024239	EDC3	100	88.976	ENSRBIG00000019488	EDC3	100	88.976	Rhinopithecus_bieti
ENSCPBG00000024239	EDC3	100	88.976	ENSRROG00000034959	EDC3	100	88.976	Rhinopithecus_roxellana
ENSCPBG00000024239	EDC3	100	89.567	ENSSBOG00000004896	EDC3	100	89.567	Saimiri_boliviensis_boliviensis
ENSCPBG00000024239	EDC3	96	89.980	ENSSHAG00000015075	EDC3	95	89.980	Sarcophilus_harrisii
ENSCPBG00000024239	EDC3	82	78.261	ENSSFOG00015002439	edc3	100	65.175	Scleropages_formosus
ENSCPBG00000024239	EDC3	99	71.680	ENSSFOG00015016939	edc3	99	72.266	Scleropages_formosus
ENSCPBG00000024239	EDC3	99	56.920	ENSSMAG00000010176	-	99	56.920	Scophthalmus_maximus
ENSCPBG00000024239	EDC3	100	70.727	ENSSMAG00000010695	edc3	100	70.727	Scophthalmus_maximus
ENSCPBG00000024239	EDC3	100	70.588	ENSSDUG00000021844	edc3	100	70.727	Seriola_dumerili
ENSCPBG00000024239	EDC3	99	60.352	ENSSDUG00000007671	EDC3	99	60.352	Seriola_dumerili
ENSCPBG00000024239	EDC3	100	70.588	ENSSLDG00000022046	edc3	100	70.727	Seriola_lalandi_dorsalis
ENSCPBG00000024239	EDC3	81	89.516	ENSSARG00000003907	EDC3	80	89.516	Sorex_araneus
ENSCPBG00000024239	EDC3	100	93.504	ENSSPUG00000008232	EDC3	100	93.504	Sphenodon_punctatus
ENSCPBG00000024239	EDC3	100	70.727	ENSSPAG00000010009	edc3	100	70.727	Stegastes_partitus
ENSCPBG00000024239	EDC3	99	58.203	ENSSPAG00000020327	EDC3	99	58.203	Stegastes_partitus
ENSCPBG00000024239	EDC3	100	88.583	ENSSSCG00000001903	EDC3	100	88.583	Sus_scrofa
ENSCPBG00000024239	EDC3	100	92.717	ENSTGUG00000004007	EDC3	100	92.717	Taeniopygia_guttata
ENSCPBG00000024239	EDC3	100	70.727	ENSTRUG00000017078	edc3	100	70.727	Takifugu_rubripes
ENSCPBG00000024239	EDC3	100	69.472	ENSTNIG00000016047	edc3	100	69.472	Tetraodon_nigroviridis
ENSCPBG00000024239	EDC3	100	88.583	ENSTTRG00000007990	EDC3	100	88.583	Tursiops_truncatus
ENSCPBG00000024239	EDC3	100	89.173	ENSUAMG00000026710	-	100	89.173	Ursus_americanus
ENSCPBG00000024239	EDC3	100	89.173	ENSUMAG00000005006	EDC3	96	89.173	Ursus_maritimus
ENSCPBG00000024239	EDC3	79	85.185	ENSVPAG00000003499	-	79	85.185	Vicugna_pacos
ENSCPBG00000024239	EDC3	100	88.583	ENSVVUG00000018601	EDC3	100	88.583	Vulpes_vulpes
ENSCPBG00000024239	EDC3	68	83.046	ENSXETG00000010622	edc3	99	84.195	Xenopus_tropicalis
ENSCPBG00000024239	EDC3	100	69.155	ENSXMAG00000007377	edc3	100	69.155	Xiphophorus_maculatus