EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000025019 (Gene tree)
Gene ID: 101933078
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 75897 bases
Position: chr4:36099433-36175329
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000035979	Fip1	PF05182.13	3.7e-25	1	1
ENSCPBP00000035977	Fip1	PF05182.13	1.1e-24	1	1
ENSCPBP00000035976	Fip1	PF05182.13	1.1e-24	1	1
ENSCPBP00000035973	Fip1	PF05182.13	1.2e-24	1	1
ENSCPBP00000035972	Fip1	PF05182.13	1.3e-24	1	1
ENSCPBP00000035970	Fip1	PF05182.13	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000042184	-	2334	XM_005299092	ENSCPBP00000035970	630 (aa)	XP_005299149	UPI00038902FF
ENSCPBT00000042186	-	2265	XM_005299094	ENSCPBP00000035972	607 (aa)	XP_005299151	UPI000388FF19
ENSCPBT00000042187	-	2196	XM_005299095	ENSCPBP00000035973	584 (aa)	XP_005299152	UPI000388F941
ENSCPBT00000042193	-	1532	-	ENSCPBP00000035979	366 (aa)	-	-
ENSCPBT00000042191	-	2088	XM_005299097	ENSCPBP00000035977	548 (aa)	XP_005299154	UPI000388BF75
ENSCPBT00000042190	-	2136	-	ENSCPBP00000035976	564 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000025019's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000025019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000025019	-	68	82.979	ENSACIG00000001454	fip1l1b	89	50.000	Amphilophus_citrinellus
ENSCPBG00000025019	-	67	62.712	ENSAOCG00000021043	fip1l1b	95	60.656	Amphiprion_ocellaris
ENSCPBG00000025019	-	97	55.798	ENSAPEG00000022229	fip1l1b	95	60.656	Amphiprion_percula
ENSCPBG00000025019	-	97	60.932	ENSATEG00000021757	fip1l1b	99	59.836	Anabas_testudineus
ENSCPBG00000025019	-	93	81.884	ENSAPLG00000003042	-	100	81.818	Anas_platyrhynchos
ENSCPBG00000025019	-	93	88.294	ENSACAG00000010556	-	99	78.607	Anolis_carolinensis
ENSCPBG00000025019	-	99	59.511	ENSACLG00000010418	fip1l1b	99	61.475	Astatotilapia_calliptera
ENSCPBG00000025019	-	67	70.323	ENSAMXG00000011126	fip1l1b	89	57.313	Astyanax_mexicanus
ENSCPBG00000025019	-	60	38.529	ENSAMXG00000031045	fip1l1a	85	38.745	Astyanax_mexicanus
ENSCPBG00000025019	-	100	83.860	ENSBTAG00000020653	FIP1L1	100	88.040	Bos_taurus
ENSCPBG00000025019	-	100	86.306	ENSCHIG00000025903	-	100	88.040	Capra_hircus
ENSCPBG00000025019	-	80	87.435	ENSCAPG00000009569	-	90	87.435	Cavia_aperea
ENSCPBG00000025019	-	93	84.545	ENSCPOG00000010770	-	97	88.704	Cavia_porcellus
ENSCPBG00000025019	-	100	85.430	ENSCGRG00001018568	Fip1l1	100	88.704	Cricetulus_griseus_chok1gshd
ENSCPBG00000025019	-	100	85.430	ENSCGRG00000000208	Fip1l1	100	88.704	Cricetulus_griseus_crigri
ENSCPBG00000025019	-	97	60.289	ENSCSEG00000006583	fip1l1b	99	62.791	Cynoglossus_semilaevis
ENSCPBG00000025019	-	99	60.417	ENSCVAG00000023435	fip1l1b	99	59.934	Cyprinodon_variegatus
ENSCPBG00000025019	-	87	39.344	ENSDARG00000043328	fip1l1a	82	46.798	Danio_rerio
ENSCPBG00000025019	-	97	55.912	ENSDARG00000070431	fip1l1b	96	59.868	Danio_rerio
ENSCPBG00000025019	-	82	81.443	ENSETEG00000018271	-	92	79.461	Echinops_telfairi
ENSCPBG00000025019	-	100	82.852	ENSEASG00005019566	-	100	83.557	Equus_asinus_asinus
ENSCPBG00000025019	-	65	83.947	ENSEEUG00000004965	-	68	84.184	Erinaceus_europaeus
ENSCPBG00000025019	-	69	54.167	ENSELUG00000001280	fip1l1b	92	63.924	Esox_lucius
ENSCPBG00000025019	-	97	53.431	ENSELUG00000004607	fip1l1a	91	46.305	Esox_lucius
ENSCPBG00000025019	-	99	59.589	ENSFHEG00000003843	fip1l1b	86	60.526	Fundulus_heteroclitus
ENSCPBG00000025019	-	65	32.468	ENSGMOG00000012065	-	55	35.909	Gadus_morhua
ENSCPBG00000025019	-	97	50.943	ENSGMOG00000004913	fip1l1b	77	58.986	Gadus_morhua
ENSCPBG00000025019	-	100	87.978	ENSGALG00000013943	-	100	89.224	Gallus_gallus
ENSCPBG00000025019	-	99	59.758	ENSGAFG00000008253	fip1l1b	99	61.044	Gambusia_affinis
ENSCPBG00000025019	-	97	51.186	ENSGACG00000015946	fip1l1b	97	52.201	Gasterosteus_aculeatus
ENSCPBG00000025019	-	100	99.671	ENSGAGG00000009763	-	100	99.671	Gopherus_agassizii
ENSCPBG00000025019	-	99	59.511	ENSHBUG00000013978	fip1l1b	99	61.475	Haplochromis_burtoni
ENSCPBG00000025019	-	99	59.965	ENSHCOG00000015834	fip1l1b	99	63.008	Hippocampus_comes
ENSCPBG00000025019	-	96	50.991	ENSIPUG00000022454	fip1l1b	90	63.761	Ictalurus_punctatus
ENSCPBG00000025019	-	97	58.156	ENSKMAG00000021938	fip1l1b	99	59.514	Kryptolebias_marmoratus
ENSCPBG00000025019	-	98	56.093	ENSLBEG00000028819	fip1l1b	95	64.430	Labrus_bergylta
ENSCPBG00000025019	-	96	67.472	ENSLACG00000011991	fip1l1a	99	66.946	Latimeria_chalumnae
ENSCPBG00000025019	-	99	58.545	ENSLOCG00000014127	fip1l1b	99	61.745	Lepisosteus_oculatus
ENSCPBG00000025019	-	99	58.537	ENSMAMG00000004535	fip1l1b	99	62.295	Mastacembelus_armatus
ENSCPBG00000025019	-	99	59.511	ENSMZEG00005023828	fip1l1b	99	61.475	Maylandia_zebra
ENSCPBG00000025019	-	93	83.008	ENSMGAG00000011885	-	100	89.372	Meleagris_gallopavo
ENSCPBG00000025019	-	100	78.642	ENSMAUG00000010526	Fip1l1	98	89.254	Mesocricetus_auratus
ENSCPBG00000025019	-	94	90.476	ENSMOCG00000008020	Fip1l1	100	84.053	Microtus_ochrogaster
ENSCPBG00000025019	-	80	52.263	ENSMMOG00000008262	fip1l1b	81	69.565	Mola_mola
ENSCPBG00000025019	-	84	85.081	ENSMODG00000020654	-	93	85.081	Monodelphis_domestica
ENSCPBG00000025019	-	97	45.896	ENSMALG00000000838	fip1l1b	99	42.637	Monopterus_albus
ENSCPBG00000025019	-	94	89.881	MGP_CAROLIEiJ_G0027304	Fip1l1	100	89.037	Mus_caroli
ENSCPBG00000025019	-	94	89.881	ENSMUSG00000029227	Fip1l1	100	89.037	Mus_musculus
ENSCPBG00000025019	-	94	89.881	MGP_PahariEiJ_G0017085	Fip1l1	100	89.037	Mus_pahari
ENSCPBG00000025019	-	94	89.881	MGP_SPRETEiJ_G0028299	Fip1l1	100	89.037	Mus_spretus
ENSCPBG00000025019	-	100	81.623	ENSNGAG00000008849	Fip1l1	100	88.704	Nannospalax_galili
ENSCPBG00000025019	-	99	57.699	ENSNBRG00000017832	fip1l1b	95	61.475	Neolamprologus_brichardi
ENSCPBG00000025019	-	55	63.902	ENSMEUG00000012782	-	69	86.207	Notamacropus_eugenii
ENSCPBG00000025019	-	99	57.560	ENSONIG00000008785	fip1l1b	95	61.475	Oreochromis_niloticus
ENSCPBG00000025019	-	93	76.565	ENSOANG00000003384	-	100	74.606	Ornithorhynchus_anatinus
ENSCPBG00000025019	-	97	60.644	ENSORLG00000004397	fip1l1b	99	60.000	Oryzias_latipes
ENSCPBG00000025019	-	99	59.582	ENSORLG00020008716	fip1l1b	99	60.000	Oryzias_latipes_hni
ENSCPBG00000025019	-	99	59.582	ENSORLG00015006736	fip1l1b	99	60.000	Oryzias_latipes_hsok
ENSCPBG00000025019	-	97	43.718	ENSOMEG00000015730	fip1l1b	86	62.032	Oryzias_melastigma
ENSCPBG00000025019	-	93	85.049	ENSOARG00000018767	-	97	85.463	Ovis_aries
ENSCPBG00000025019	-	53	42.991	ENSPKIG00000014162	-	50	45.238	Paramormyrops_kingsleyae
ENSCPBG00000025019	-	100	53.472	ENSPKIG00000003396	fip1l1b	95	64.202	Paramormyrops_kingsleyae
ENSCPBG00000025019	-	98	52.703	ENSPMGG00000017028	fip1l1b	94	59.825	Periophthalmus_magnuspinnatus
ENSCPBG00000025019	-	94	89.881	ENSPEMG00000002025	Fip1l1	100	89.037	Peromyscus_maniculatus_bairdii
ENSCPBG00000025019	-	55	84.830	ENSPCIG00000019318	-	92	84.375	Phascolarctos_cinereus
ENSCPBG00000025019	-	99	57.877	ENSPFOG00000014745	fip1l1b	99	61.789	Poecilia_formosa
ENSCPBG00000025019	-	97	57.867	ENSPLAG00000010954	fip1l1b	99	61.789	Poecilia_latipinna
ENSCPBG00000025019	-	99	58.048	ENSPMEG00000019187	fip1l1b	99	61.789	Poecilia_mexicana
ENSCPBG00000025019	-	66	61.017	ENSPREG00000012535	fip1l1b	81	61.212	Poecilia_reticulata
ENSCPBG00000025019	-	54	91.892	ENSPVAG00000000716	-	56	92.308	Pteropus_vampyrus
ENSCPBG00000025019	-	53	61.836	ENSPNYG00000015976	fip1l1b	87	67.059	Pundamilia_nyererei
ENSCPBG00000025019	-	59	40.653	ENSPNAG00000009853	fip1l1a	77	40.273	Pygocentrus_nattereri
ENSCPBG00000025019	-	82	47.087	ENSPNAG00000007456	-	50	43.902	Pygocentrus_nattereri
ENSCPBG00000025019	-	53	63.592	ENSPNAG00000015341	fip1l1b	65	63.071	Pygocentrus_nattereri
ENSCPBG00000025019	-	94	89.881	ENSRNOG00000002275	Fip1l1	100	83.721	Rattus_norvegicus
ENSCPBG00000025019	-	96	84.397	ENSSHAG00000015789	-	96	84.043	Sarcophilus_harrisii
ENSCPBG00000025019	-	91	54.615	ENSSFOG00015017653	fip1l1b	94	59.606	Scleropages_formosus
ENSCPBG00000025019	-	51	51.000	ENSSFOG00015010948	-	77	45.981	Scleropages_formosus
ENSCPBG00000025019	-	97	59.075	ENSSMAG00000013444	fip1l1b	99	63.816	Scophthalmus_maximus
ENSCPBG00000025019	-	97	59.857	ENSSDUG00000004117	fip1l1b	99	61.066	Seriola_dumerili
ENSCPBG00000025019	-	97	60.323	ENSSLDG00000024099	fip1l1b	99	65.484	Seriola_lalandi_dorsalis
ENSCPBG00000025019	-	91	89.286	ENSSARG00000001973	-	89	88.660	Sorex_araneus
ENSCPBG00000025019	-	53	74.742	ENSSPUG00000017328	-	92	88.889	Sphenodon_punctatus
ENSCPBG00000025019	-	97	57.292	ENSSPAG00000017564	fip1l1b	95	60.656	Stegastes_partitus
ENSCPBG00000025019	-	93	81.359	ENSTGUG00000007834	-	99	88.725	Taeniopygia_guttata
ENSCPBG00000025019	-	99	57.913	ENSTRUG00000001545	fip1l1b	99	58.943	Takifugu_rubripes
ENSCPBG00000025019	-	99	55.246	ENSTNIG00000004104	fip1l1b	99	54.262	Tetraodon_nigroviridis
ENSCPBG00000025019	-	87	87.500	ENSUMAG00000002758	-	100	85.185	Ursus_maritimus
ENSCPBG00000025019	-	84	89.286	ENSVPAG00000011574	-	86	88.660	Vicugna_pacos
ENSCPBG00000025019	-	94	69.388	ENSXETG00000011679	fip1l1	82	71.066	Xenopus_tropicalis
ENSCPBG00000025019	-	99	48.929	ENSXCOG00000013656	fip1l1b	86	65.086	Xiphophorus_couchianus
ENSCPBG00000025019	-	99	59.965	ENSXMAG00000017620	fip1l1b	99	61.943	Xiphophorus_maculatus