EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000025083 (Gene tree)
Gene ID: 101946604
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 29859 bases
Position: chrKK082979.1:2641821-2671679
Accession: 16638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000036061	PWI	PF01480.17	8.4e-30	1	1
ENSCPBP00000036059	PWI	PF01480.17	8.5e-30	1	1
ENSCPBP00000036064	PWI	PF01480.17	7.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000042294	SRRM1-203	3484	-	ENSCPBP00000036064	818 (aa)	-	-
ENSCPBT00000042289	SRRM1-201	3949	-	ENSCPBP00000036059	901 (aa)	-	-
ENSCPBT00000042291	SRRM1-202	3907	-	ENSCPBP00000036061	887 (aa)	XP_008169224	UPI00046BF928

Gene Model

Click here to download ENSCPBG00000025083's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000025083's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000025083	SRRM1	75	92.342	ENSGALG00000001283	SRRM1	99	100.000	Gallus_gallus
ENSCPBG00000025083	SRRM1	100	98.015	ENSGAGG00000009243	SRRM1	100	98.015	Gopherus_agassizii
ENSCPBG00000025083	SRRM1	57	94.269	ENSMGAG00000002060	SRRM1	60	93.928	Meleagris_gallopavo
ENSCPBG00000025083	SRRM1	85	82.711	ENSPSIG00000013119	SRRM1	61	97.379	Pelodiscus_sinensis
ENSCPBG00000025083	SRRM1	56	92.073	ENSPCAG00000015138	SRRM1	54	87.912	Procavia_capensis
ENSCPBG00000025083	SRRM1	64	73.098	ENSSARG00000013718	SRRM1	52	83.333	Sorex_araneus