EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000025848 (Gene tree)
Gene ID: 101945960
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 45859 bases
Position: chrKK083007.1:3567850-3613708
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000037280	EST1	PF10374.9	5.7e-24	1	1
ENSCPBP00000037280	EST1_DNA_bind	PF10373.9	5.5e-40	1	2
ENSCPBP00000037280	EST1_DNA_bind	PF10373.9	5.5e-40	2	2
ENSCPBP00000037280	PIN_4	PF13638.6	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000043729	SMG5-201	3714	-	ENSCPBP00000037280	985 (aa)	XP_005280766	UPI000CE635B2

Gene Model

Click here to download ENSCPBG00000025848's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000025848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000025848	SMG5	100	78.600	ENSG00000198952	SMG5	94	78.905	Homo_sapiens
ENSCPBG00000025848	SMG5	100	65.279	ENSAPOG00000019690	smg5	93	65.314	Acanthochromis_polyacanthus
ENSCPBG00000025848	SMG5	100	75.709	ENSAMEG00000014458	SMG5	96	74.671	Ailuropoda_melanoleuca
ENSCPBG00000025848	SMG5	100	65.361	ENSACIG00000001353	smg5	94	65.663	Amphilophus_citrinellus
ENSCPBG00000025848	SMG5	100	62.384	ENSAOCG00000019483	smg5	94	61.998	Amphiprion_ocellaris
ENSCPBG00000025848	SMG5	100	64.724	ENSAPEG00000022949	smg5	94	65.462	Amphiprion_percula
ENSCPBG00000025848	SMG5	100	63.976	ENSATEG00000005348	smg5	94	64.960	Anabas_testudineus
ENSCPBG00000025848	SMG5	100	91.066	ENSAPLG00000010263	SMG5	96	91.066	Anas_platyrhynchos
ENSCPBG00000025848	SMG5	51	77.579	ENSACAG00000009162	-	99	79.208	Anolis_carolinensis
ENSCPBG00000025848	SMG5	100	78.499	ENSANAG00000032899	SMG5	94	78.905	Aotus_nancymaae
ENSCPBG00000025848	SMG5	100	65.196	ENSACLG00000009311	smg5	93	66.030	Astatotilapia_calliptera
ENSCPBG00000025848	SMG5	100	78.116	ENSBTAG00000009435	SMG5	94	76.900	Bos_taurus
ENSCPBG00000025848	SMG5	99	43.763	ENSBTAG00000021747	-	93	43.675	Bos_taurus
ENSCPBG00000025848	SMG5	100	78.702	ENSCJAG00000005684	SMG5	94	79.108	Callithrix_jacchus
ENSCPBG00000025848	SMG5	100	77.181	ENSCAFG00000016839	SMG5	93	76.471	Canis_familiaris
ENSCPBG00000025848	SMG5	100	77.181	ENSCAFG00020006061	SMG5	93	76.471	Canis_lupus_dingo
ENSCPBG00000025848	SMG5	100	78.318	ENSCHIG00000007709	SMG5	94	77.102	Capra_hircus
ENSCPBG00000025848	SMG5	99	44.242	ENSCHIG00000006323	-	94	44.153	Capra_hircus
ENSCPBG00000025848	SMG5	100	78.398	ENSTSYG00000004099	SMG5	94	78.723	Carlito_syrichta
ENSCPBG00000025848	SMG5	100	59.312	ENSCAPG00000003631	SMG5	99	58.746	Cavia_aperea
ENSCPBG00000025848	SMG5	100	77.935	ENSCPOG00000015696	SMG5	94	77.586	Cavia_porcellus
ENSCPBG00000025848	SMG5	100	78.600	ENSCCAG00000027409	SMG5	94	78.702	Cebus_capucinus
ENSCPBG00000025848	SMG5	100	78.398	ENSCATG00000030539	SMG5	94	78.702	Cercocebus_atys
ENSCPBG00000025848	SMG5	100	78.239	ENSCLAG00000003983	SMG5	94	77.890	Chinchilla_lanigera
ENSCPBG00000025848	SMG5	100	78.398	ENSCSAG00000002120	SMG5	94	78.702	Chlorocebus_sabaeus
ENSCPBG00000025848	SMG5	52	83.051	ENSCHOG00000008741	-	52	83.051	Choloepus_hoffmanni
ENSCPBG00000025848	SMG5	100	74.442	ENSCANG00000029208	SMG5	93	74.746	Colobus_angolensis_palliatus
ENSCPBG00000025848	SMG5	100	77.665	ENSCGRG00001006336	Smg5	94	77.282	Cricetulus_griseus_chok1gshd
ENSCPBG00000025848	SMG5	100	77.665	ENSCGRG00000005111	Smg5	96	77.282	Cricetulus_griseus_crigri
ENSCPBG00000025848	SMG5	100	63.920	ENSCSEG00000014220	smg5	93	63.444	Cynoglossus_semilaevis
ENSCPBG00000025848	SMG5	100	58.759	ENSCVAG00000000529	smg5	93	58.593	Cyprinodon_variegatus
ENSCPBG00000025848	SMG5	56	60.490	ENSDARG00000041481	smg5	94	62.500	Danio_rerio
ENSCPBG00000025848	SMG5	100	74.239	ENSDNOG00000000051	SMG5	93	73.790	Dasypus_novemcinctus
ENSCPBG00000025848	SMG5	96	35.115	ENSDNOG00000039862	-	97	34.906	Dasypus_novemcinctus
ENSCPBG00000025848	SMG5	100	77.429	ENSDORG00000010382	Smg5	94	77.102	Dipodomys_ordii
ENSCPBG00000025848	SMG5	88	36.765	FBgn0019890	Smg5	56	36.765	Drosophila_melanogaster
ENSCPBG00000025848	SMG5	82	91.262	ENSETEG00000010336	SMG5	84	91.262	Echinops_telfairi
ENSCPBG00000025848	SMG5	100	78.499	ENSEASG00005019122	SMG5	94	78.702	Equus_asinus_asinus
ENSCPBG00000025848	SMG5	100	78.398	ENSECAG00000001389	SMG5	94	78.600	Equus_caballus
ENSCPBG00000025848	SMG5	70	95.098	ENSEEUG00000012690	SMG5	71	95.098	Erinaceus_europaeus
ENSCPBG00000025848	SMG5	100	65.524	ENSELUG00000012585	smg5	93	65.086	Esox_lucius
ENSCPBG00000025848	SMG5	100	76.673	ENSFCAG00000011783	SMG5	93	76.166	Felis_catus
ENSCPBG00000025848	SMG5	60	89.643	ENSFALG00000001166	-	100	89.643	Ficedula_albicollis
ENSCPBG00000025848	SMG5	100	76.619	ENSFDAG00000017388	SMG5	96	75.862	Fukomys_damarensis
ENSCPBG00000025848	SMG5	100	61.416	ENSFHEG00000013939	smg5	97	60.481	Fundulus_heteroclitus
ENSCPBG00000025848	SMG5	100	61.754	ENSGMOG00000007310	smg5	94	61.453	Gadus_morhua
ENSCPBG00000025848	SMG5	100	85.584	ENSGALG00000029918	-	94	85.584	Gallus_gallus
ENSCPBG00000025848	SMG5	68	79.235	ENSGAFG00000021691	smg5	94	57.670	Gambusia_affinis
ENSCPBG00000025848	SMG5	100	61.474	ENSGACG00000013142	smg5	94	61.748	Gasterosteus_aculeatus
ENSCPBG00000025848	SMG5	100	98.376	ENSGAGG00000016131	SMG5	94	98.376	Gopherus_agassizii
ENSCPBG00000025848	SMG5	100	78.600	ENSGGOG00000010932	SMG5	94	78.905	Gorilla_gorilla
ENSCPBG00000025848	SMG5	100	65.566	ENSHBUG00000008654	smg5	94	66.365	Haplochromis_burtoni
ENSCPBG00000025848	SMG5	100	76.186	ENSHGLG00000019152	SMG5	94	75.681	Heterocephalus_glaber_female
ENSCPBG00000025848	SMG5	90	76.570	ENSHGLG00100015948	SMG5	93	76.094	Heterocephalus_glaber_male
ENSCPBG00000025848	SMG5	84	75.284	ENSHCOG00000010229	smg5	86	75.000	Hippocampus_comes
ENSCPBG00000025848	SMG5	100	62.952	ENSIPUG00000006624	Smg5	94	62.619	Ictalurus_punctatus
ENSCPBG00000025848	SMG5	100	78.702	ENSSTOG00000001780	SMG5	94	78.071	Ictidomys_tridecemlineatus
ENSCPBG00000025848	SMG5	100	77.351	ENSJJAG00000022763	Smg5	94	76.566	Jaculus_jaculus
ENSCPBG00000025848	SMG5	55	60.682	ENSKMAG00000014586	smg5	94	61.696	Kryptolebias_marmoratus
ENSCPBG00000025848	SMG5	100	64.653	ENSLBEG00000002145	smg5	93	64.350	Labrus_bergylta
ENSCPBG00000025848	SMG5	100	70.464	ENSLACG00000010521	SMG5	94	70.374	Latimeria_chalumnae
ENSCPBG00000025848	SMG5	100	77.890	ENSLAFG00000006241	SMG5	94	77.259	Loxodonta_africana
ENSCPBG00000025848	SMG5	100	78.398	ENSMFAG00000045357	SMG5	94	78.702	Macaca_fascicularis
ENSCPBG00000025848	SMG5	100	78.398	ENSMMUG00000000090	SMG5	94	78.702	Macaca_mulatta
ENSCPBG00000025848	SMG5	100	78.296	ENSMNEG00000044425	SMG5	94	78.600	Macaca_nemestrina
ENSCPBG00000025848	SMG5	99	73.904	ENSMLEG00000041192	SMG5	95	74.210	Mandrillus_leucophaeus
ENSCPBG00000025848	SMG5	100	61.781	ENSMAMG00000010683	smg5	100	61.767	Mastacembelus_armatus
ENSCPBG00000025848	SMG5	100	62.512	ENSMZEG00005015815	smg5	93	63.400	Maylandia_zebra
ENSCPBG00000025848	SMG5	68	58.358	ENSMZEG00005016543	smg5	100	58.910	Maylandia_zebra
ENSCPBG00000025848	SMG5	100	77.360	ENSMAUG00000010381	Smg5	94	76.697	Mesocricetus_auratus
ENSCPBG00000025848	SMG5	100	78.499	ENSMICG00000002257	SMG5	93	77.970	Microcebus_murinus
ENSCPBG00000025848	SMG5	51	46.906	ENSMOCG00000008423	-	75	48.394	Microtus_ochrogaster
ENSCPBG00000025848	SMG5	100	76.488	ENSMOCG00000016590	Smg5	94	76.089	Microtus_ochrogaster
ENSCPBG00000025848	SMG5	100	60.360	ENSMMOG00000017199	smg5	94	59.981	Mola_mola
ENSCPBG00000025848	SMG5	99	34.066	ENSMODG00000004511	-	96	33.300	Monodelphis_domestica
ENSCPBG00000025848	SMG5	76	39.200	ENSMODG00000004735	-	85	39.200	Monodelphis_domestica
ENSCPBG00000025848	SMG5	78	38.083	ENSMODG00000004532	-	83	38.083	Monodelphis_domestica
ENSCPBG00000025848	SMG5	87	80.536	ENSMODG00000016901	SMG5	91	79.556	Monodelphis_domestica
ENSCPBG00000025848	SMG5	78	38.035	ENSMODG00000010675	-	86	38.035	Monodelphis_domestica
ENSCPBG00000025848	SMG5	100	61.194	ENSMALG00000010375	smg5	94	59.814	Monopterus_albus
ENSCPBG00000025848	SMG5	100	77.157	MGP_CAROLIEiJ_G0025163	Smg5	96	96.491	Mus_caroli
ENSCPBG00000025848	SMG5	100	77.360	ENSMUSG00000001415	Smg5	95	96.491	Mus_musculus
ENSCPBG00000025848	SMG5	100	77.383	MGP_PahariEiJ_G0026606	Smg5	96	96.491	Mus_pahari
ENSCPBG00000025848	SMG5	100	77.157	MGP_SPRETEiJ_G0026104	Smg5	96	96.491	Mus_spretus
ENSCPBG00000025848	SMG5	100	76.065	ENSMPUG00000004546	SMG5	100	74.544	Mustela_putorius_furo
ENSCPBG00000025848	SMG5	100	77.227	ENSMLUG00000008518	SMG5	94	77.419	Myotis_lucifugus
ENSCPBG00000025848	SMG5	100	78.014	ENSNGAG00000020706	Smg5	94	77.079	Nannospalax_galili
ENSCPBG00000025848	SMG5	86	57.895	ENSNGAG00000012101	-	93	43.725	Nannospalax_galili
ENSCPBG00000025848	SMG5	97	61.698	ENSNBRG00000004332	smg5	91	61.594	Neolamprologus_brichardi
ENSCPBG00000025848	SMG5	100	78.261	ENSNLEG00000012439	SMG5	94	78.564	Nomascus_leucogenys
ENSCPBG00000025848	SMG5	100	79.230	ENSMEUG00000012834	SMG5	94	78.274	Notamacropus_eugenii
ENSCPBG00000025848	SMG5	100	77.079	ENSOPRG00000009152	SMG5	94	76.650	Ochotona_princeps
ENSCPBG00000025848	SMG5	100	78.071	ENSODEG00000012237	SMG5	93	77.868	Octodon_degus
ENSCPBG00000025848	SMG5	100	62.117	ENSONIG00000008632	smg5	94	62.140	Oreochromis_niloticus
ENSCPBG00000025848	SMG5	100	77.890	ENSOCUG00000012886	SMG5	96	78.195	Oryctolagus_cuniculus
ENSCPBG00000025848	SMG5	90	39.418	ENSOCUG00000023338	-	92	38.970	Oryctolagus_cuniculus
ENSCPBG00000025848	SMG5	100	60.771	ENSORLG00000016239	smg5	94	62.736	Oryzias_latipes
ENSCPBG00000025848	SMG5	100	63.600	ENSORLG00020013127	smg5	93	64.400	Oryzias_latipes_hni
ENSCPBG00000025848	SMG5	100	63.509	ENSORLG00015019014	smg5	93	64.307	Oryzias_latipes_hsok
ENSCPBG00000025848	SMG5	82	59.637	ENSOMEG00000021330	smg5	86	60.182	Oryzias_melastigma
ENSCPBG00000025848	SMG5	100	77.282	ENSOGAG00000004966	SMG5	94	77.282	Otolemur_garnettii
ENSCPBG00000025848	SMG5	99	44.299	ENSOARG00000011963	-	93	43.996	Ovis_aries
ENSCPBG00000025848	SMG5	100	78.217	ENSOARG00000005778	SMG5	94	77.001	Ovis_aries
ENSCPBG00000025848	SMG5	100	78.398	ENSPPAG00000011996	SMG5	94	78.702	Pan_paniscus
ENSCPBG00000025848	SMG5	100	76.471	ENSPPRG00000011901	SMG5	96	75.963	Panthera_pardus
ENSCPBG00000025848	SMG5	99	71.546	ENSPTIG00000007892	SMG5	92	71.921	Panthera_tigris_altaica
ENSCPBG00000025848	SMG5	100	78.398	ENSPTRG00000023925	SMG5	94	78.702	Pan_troglodytes
ENSCPBG00000025848	SMG5	100	78.398	ENSPTRG00000049282	-	94	78.702	Pan_troglodytes
ENSCPBG00000025848	SMG5	100	78.398	ENSPANG00000011201	SMG5	94	78.702	Papio_anubis
ENSCPBG00000025848	SMG5	100	65.319	ENSPKIG00000009402	smg5	93	65.112	Paramormyrops_kingsleyae
ENSCPBG00000025848	SMG5	100	97.056	ENSPSIG00000015198	SMG5	96	94.534	Pelodiscus_sinensis
ENSCPBG00000025848	SMG5	100	60.861	ENSPMGG00000010465	smg5	94	60.229	Periophthalmus_magnuspinnatus
ENSCPBG00000025848	SMG5	100	77.282	ENSPEMG00000001819	Smg5	94	76.572	Peromyscus_maniculatus_bairdii
ENSCPBG00000025848	SMG5	100	47.671	ENSPMAG00000000410	smg5	94	48.272	Petromyzon_marinus
ENSCPBG00000025848	SMG5	100	80.142	ENSPCIG00000018938	SMG5	94	79.006	Phascolarctos_cinereus
ENSCPBG00000025848	SMG5	100	64.688	ENSPMEG00000014105	smg5	94	65.431	Poecilia_mexicana
ENSCPBG00000025848	SMG5	100	78.702	ENSPPYG00000000723	SMG5	94	79.006	Pongo_abelii
ENSCPBG00000025848	SMG5	75	97.076	ENSPCAG00000008412	SMG5	74	97.076	Procavia_capensis
ENSCPBG00000025848	SMG5	100	79.006	ENSPCOG00000004741	SMG5	94	78.477	Propithecus_coquereli
ENSCPBG00000025848	SMG5	100	69.675	ENSPVAG00000016748	SMG5	94	68.731	Pteropus_vampyrus
ENSCPBG00000025848	SMG5	100	61.368	ENSPNYG00000013397	smg5	97	61.874	Pundamilia_nyererei
ENSCPBG00000025848	SMG5	100	62.286	ENSPNAG00000028363	smg5	94	62.286	Pygocentrus_nattereri
ENSCPBG00000025848	SMG5	100	77.462	ENSRNOG00000019590	Smg5	94	77.181	Rattus_norvegicus
ENSCPBG00000025848	SMG5	100	78.093	ENSRBIG00000027428	SMG5	94	78.398	Rhinopithecus_bieti
ENSCPBG00000025848	SMG5	100	77.992	ENSRROG00000030035	SMG5	94	78.296	Rhinopithecus_roxellana
ENSCPBG00000025848	SMG5	100	78.499	ENSSBOG00000033339	SMG5	94	78.905	Saimiri_boliviensis_boliviensis
ENSCPBG00000025848	SMG5	87	37.018	ENSSHAG00000000561	-	83	39.335	Sarcophilus_harrisii
ENSCPBG00000025848	SMG5	53	38.506	ENSSHAG00000000935	-	77	38.483	Sarcophilus_harrisii
ENSCPBG00000025848	SMG5	100	32.895	ENSSHAG00000009572	-	75	46.018	Sarcophilus_harrisii
ENSCPBG00000025848	SMG5	100	79.658	ENSSHAG00000014163	SMG5	96	78.607	Sarcophilus_harrisii
ENSCPBG00000025848	SMG5	100	65.895	ENSSFOG00015024175	smg5	93	64.108	Scleropages_formosus
ENSCPBG00000025848	SMG5	100	61.116	ENSSMAG00000013059	smg5	94	62.384	Scophthalmus_maximus
ENSCPBG00000025848	SMG5	100	61.168	ENSSDUG00000007122	smg5	94	61.967	Seriola_dumerili
ENSCPBG00000025848	SMG5	100	61.581	ENSSLDG00000011418	smg5	94	62.384	Seriola_lalandi_dorsalis
ENSCPBG00000025848	SMG5	90	66.104	ENSSARG00000012484	SMG5	93	65.953	Sorex_araneus
ENSCPBG00000025848	SMG5	100	89.372	ENSSPUG00000002260	SMG5	100	89.777	Sphenodon_punctatus
ENSCPBG00000025848	SMG5	100	65.020	ENSSPAG00000014266	smg5	93	65.040	Stegastes_partitus
ENSCPBG00000025848	SMG5	100	60.751	ENSSSCG00000039308	-	94	61.803	Sus_scrofa
ENSCPBG00000025848	SMG5	100	78.296	ENSSSCG00000006490	-	100	78.622	Sus_scrofa
ENSCPBG00000025848	SMG5	100	88.349	ENSTGUG00000003748	-	93	88.450	Taeniopygia_guttata
ENSCPBG00000025848	SMG5	100	64.464	ENSTRUG00000012580	smg5	94	64.121	Takifugu_rubripes
ENSCPBG00000025848	SMG5	100	65.365	ENSTNIG00000010303	smg5	94	64.510	Tetraodon_nigroviridis
ENSCPBG00000025848	SMG5	59	97.044	ENSTBEG00000002777	SMG5	59	97.044	Tupaia_belangeri
ENSCPBG00000025848	SMG5	100	76.775	ENSTTRG00000001401	SMG5	93	75.761	Tursiops_truncatus
ENSCPBG00000025848	SMG5	100	76.393	ENSUAMG00000013721	SMG5	93	75.355	Ursus_americanus
ENSCPBG00000025848	SMG5	100	72.424	ENSUMAG00000018041	SMG5	94	70.994	Ursus_maritimus
ENSCPBG00000025848	SMG5	97	72.193	ENSVPAG00000009446	SMG5	92	71.668	Vicugna_pacos
ENSCPBG00000025848	SMG5	100	77.282	ENSVVUG00000005887	SMG5	93	77.204	Vulpes_vulpes
ENSCPBG00000025848	SMG5	83	68.902	ENSXETG00000033791	SMG5	99	67.927	Xenopus_tropicalis
ENSCPBG00000025848	SMG5	76	71.351	ENSXCOG00000004379	smg5	88	71.978	Xiphophorus_couchianus
ENSCPBG00000025848	SMG5	100	63.800	ENSXMAG00000013499	smg5	93	64.706	Xiphophorus_maculatus