EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000026943 (Gene tree)
Gene ID: 101952997
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 7823 bases
Position: chrKK083132.1:591990-599812
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000039092	HVSL	PF09749.9	2.7e-66	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000045814	USB1-201	2526	XM_008174528	ENSCPBP00000039092	278 (aa)	XP_008172750	UPI0003889CFE

Gene Model

Click here to download ENSCPBG00000026943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000026943's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000026943	USB1	100	61.151	ENSG00000103005	USB1	100	67.290	Homo_sapiens
ENSCPBG00000026943	USB1	98	50.000	ENSAPOG00000011942	usb1	82	54.348	Acanthochromis_polyacanthus
ENSCPBG00000026943	USB1	100	63.082	ENSAMEG00000017205	USB1	100	60.791	Ailuropoda_melanoleuca
ENSCPBG00000026943	USB1	80	56.502	ENSACIG00000012234	usb1	82	56.502	Amphilophus_citrinellus
ENSCPBG00000026943	USB1	98	50.890	ENSAOCG00000014831	usb1	81	55.217	Amphiprion_ocellaris
ENSCPBG00000026943	USB1	98	51.246	ENSAPEG00000000296	usb1	81	55.652	Amphiprion_percula
ENSCPBG00000026943	USB1	98	50.350	ENSATEG00000009348	usb1	80	56.889	Anabas_testudineus
ENSCPBG00000026943	USB1	81	80.531	ENSAPLG00000002756	USB1	100	80.531	Anas_platyrhynchos
ENSCPBG00000026943	USB1	82	66.812	ENSACAG00000015481	USB1	100	66.812	Anolis_carolinensis
ENSCPBG00000026943	USB1	85	66.250	ENSANAG00000035640	USB1	92	65.306	Aotus_nancymaae
ENSCPBG00000026943	USB1	80	55.157	ENSACLG00000020586	usb1	79	55.157	Astatotilapia_calliptera
ENSCPBG00000026943	USB1	98	50.000	ENSAMXG00000040146	usb1	82	52.400	Astyanax_mexicanus
ENSCPBG00000026943	USB1	100	63.571	ENSBTAG00000015758	USB1	92	65.164	Bos_taurus
ENSCPBG00000026943	USB1	85	67.083	ENSCJAG00000011733	USB1	92	66.122	Callithrix_jacchus
ENSCPBG00000026943	USB1	99	64.388	ENSCAFG00000008556	USB1	73	63.177	Canis_familiaris
ENSCPBG00000026943	USB1	99	63.309	ENSCAFG00020009263	USB1	87	68.398	Canis_lupus_dingo
ENSCPBG00000026943	USB1	100	62.857	ENSCHIG00000024290	USB1	92	64.609	Capra_hircus
ENSCPBG00000026943	USB1	100	61.649	ENSTSYG00000006997	USB1	92	64.490	Carlito_syrichta
ENSCPBG00000026943	USB1	83	55.411	ENSCAPG00000009057	USB1	100	55.172	Cavia_aperea
ENSCPBG00000026943	USB1	100	61.871	ENSCPOG00000014325	USB1	100	61.151	Cavia_porcellus
ENSCPBG00000026943	USB1	85	65.833	ENSCCAG00000022132	USB1	92	64.898	Cebus_capucinus
ENSCPBG00000026943	USB1	100	62.590	ENSCATG00000032174	USB1	92	66.939	Cercocebus_atys
ENSCPBG00000026943	USB1	63	66.667	ENSCLAG00000007363	USB1	93	68.712	Chinchilla_lanigera
ENSCPBG00000026943	USB1	100	62.230	ENSCSAG00000004783	USB1	92	66.531	Chlorocebus_sabaeus
ENSCPBG00000026943	USB1	83	68.831	ENSCANG00000037135	USB1	88	68.534	Colobus_angolensis_palliatus
ENSCPBG00000026943	USB1	100	62.590	ENSCGRG00001011243	USB1	100	61.871	Cricetulus_griseus_chok1gshd
ENSCPBG00000026943	USB1	100	62.590	ENSCGRG00000013252	USB1	100	61.871	Cricetulus_griseus_crigri
ENSCPBG00000026943	USB1	98	50.730	ENSCSEG00000013881	usb1	83	53.680	Cynoglossus_semilaevis
ENSCPBG00000026943	USB1	81	52.193	ENSCVAG00000009252	usb1	97	52.193	Cyprinodon_variegatus
ENSCPBG00000026943	USB1	83	53.680	ENSDARG00000003841	usb1	84	53.680	Danio_rerio
ENSCPBG00000026943	USB1	100	60.432	ENSDORG00000001888	Usb1	91	64.876	Dipodomys_ordii
ENSCPBG00000026943	USB1	84	34.728	FBgn0037713	CG16790	90	34.454	Drosophila_melanogaster
ENSCPBG00000026943	USB1	100	53.047	ENSETEG00000019682	USB1	92	54.694	Echinops_telfairi
ENSCPBG00000026943	USB1	80	47.297	ENSEBUG00000005889	usb1	78	46.053	Eptatretus_burgeri
ENSCPBG00000026943	USB1	100	63.441	ENSEASG00005005484	USB1	100	61.511	Equus_asinus_asinus
ENSCPBG00000026943	USB1	99	64.388	ENSECAG00000019493	USB1	91	62.455	Equus_caballus
ENSCPBG00000026943	USB1	63	60.227	ENSEEUG00000000154	USB1	62	61.350	Erinaceus_europaeus
ENSCPBG00000026943	USB1	82	52.193	ENSELUG00000010974	usb1	84	52.193	Esox_lucius
ENSCPBG00000026943	USB1	100	61.511	ENSFCAG00000002693	USB1	100	60.498	Felis_catus
ENSCPBG00000026943	USB1	84	72.103	ENSFALG00000006876	USB1	88	72.222	Ficedula_albicollis
ENSCPBG00000026943	USB1	100	62.007	ENSFDAG00000010052	USB1	90	65.145	Fukomys_damarensis
ENSCPBG00000026943	USB1	86	50.813	ENSFHEG00000012334	usb1	77	55.670	Fundulus_heteroclitus
ENSCPBG00000026943	USB1	80	54.709	ENSGMOG00000004228	usb1	99	54.709	Gadus_morhua
ENSCPBG00000026943	USB1	80	76.786	ENSGALG00000035604	USB1	88	76.889	Gallus_gallus
ENSCPBG00000026943	USB1	98	50.890	ENSGAFG00000021890	usb1	82	55.263	Gambusia_affinis
ENSCPBG00000026943	USB1	80	53.812	ENSGACG00000003257	usb1	80	53.812	Gasterosteus_aculeatus
ENSCPBG00000026943	USB1	100	91.727	ENSGAGG00000022572	USB1	100	91.007	Gopherus_agassizii
ENSCPBG00000026943	USB1	100	61.151	ENSGGOG00000017147	USB1	92	65.306	Gorilla_gorilla
ENSCPBG00000026943	USB1	90	51.394	ENSHBUG00000009823	usb1	80	54.867	Haplochromis_burtoni
ENSCPBG00000026943	USB1	99	63.309	ENSHGLG00000016078	USB1	89	66.255	Heterocephalus_glaber_female
ENSCPBG00000026943	USB1	99	63.309	ENSHGLG00100005562	USB1	89	66.255	Heterocephalus_glaber_male
ENSCPBG00000026943	USB1	78	54.167	ENSHCOG00000015633	usb1	86	54.260	Hippocampus_comes
ENSCPBG00000026943	USB1	98	49.826	ENSIPUG00000008601	usb1	78	57.080	Ictalurus_punctatus
ENSCPBG00000026943	USB1	100	62.898	ENSSTOG00000007548	USB1	88	68.750	Ictidomys_tridecemlineatus
ENSCPBG00000026943	USB1	100	63.121	ENSJJAG00000021859	Usb1	90	66.250	Jaculus_jaculus
ENSCPBG00000026943	USB1	81	53.982	ENSKMAG00000007200	usb1	80	53.982	Kryptolebias_marmoratus
ENSCPBG00000026943	USB1	79	51.364	ENSLBEG00000008452	usb1	69	50.228	Labrus_bergylta
ENSCPBG00000026943	USB1	69	69.271	ENSLACG00000000105	USB1	66	69.271	Latimeria_chalumnae
ENSCPBG00000026943	USB1	98	49.673	ENSLOCG00000000465	usb1	99	50.671	Lepisosteus_oculatus
ENSCPBG00000026943	USB1	100	54.480	ENSLAFG00000002267	USB1	86	57.759	Loxodonta_africana
ENSCPBG00000026943	USB1	100	62.230	ENSMFAG00000003926	USB1	92	66.531	Macaca_fascicularis
ENSCPBG00000026943	USB1	100	62.230	ENSMMUG00000022669	USB1	92	66.531	Macaca_mulatta
ENSCPBG00000026943	USB1	100	61.871	ENSMNEG00000042487	USB1	92	66.122	Macaca_nemestrina
ENSCPBG00000026943	USB1	100	62.230	ENSMLEG00000028756	USB1	92	66.531	Mandrillus_leucophaeus
ENSCPBG00000026943	USB1	98	51.601	ENSMAMG00000015092	usb1	83	55.411	Mastacembelus_armatus
ENSCPBG00000026943	USB1	80	55.157	ENSMZEG00005010008	usb1	79	55.157	Maylandia_zebra
ENSCPBG00000026943	USB1	100	63.082	ENSMAUG00000007832	Usb1	100	60.072	Mesocricetus_auratus
ENSCPBG00000026943	USB1	83	67.532	ENSMICG00000004900	USB1	92	65.432	Microcebus_murinus
ENSCPBG00000026943	USB1	100	62.366	ENSMOCG00000022647	Usb1	90	65.417	Microtus_ochrogaster
ENSCPBG00000026943	USB1	81	55.357	ENSMMOG00000000490	usb1	87	55.357	Mola_mola
ENSCPBG00000026943	USB1	100	60.638	ENSMODG00000014067	USB1	91	64.198	Monodelphis_domestica
ENSCPBG00000026943	USB1	90	52.000	ENSMALG00000005930	usb1	82	54.978	Monopterus_albus
ENSCPBG00000026943	USB1	100	60.573	MGP_CAROLIEiJ_G0031421	Usb1	100	59.292	Mus_caroli
ENSCPBG00000026943	USB1	100	60.573	ENSMUSG00000031792	Usb1	100	59.292	Mus_musculus
ENSCPBG00000026943	USB1	100	58.993	MGP_PahariEiJ_G0023019	Usb1	100	59.829	Mus_pahari
ENSCPBG00000026943	USB1	100	60.215	MGP_SPRETEiJ_G0032540	Usb1	90	63.333	Mus_spretus
ENSCPBG00000026943	USB1	100	60.932	ENSMPUG00000004684	USB1	96	59.075	Mustela_putorius_furo
ENSCPBG00000026943	USB1	83	67.532	ENSMLUG00000007400	USB1	100	67.532	Myotis_lucifugus
ENSCPBG00000026943	USB1	100	61.511	ENSNGAG00000009703	Usb1	100	60.791	Nannospalax_galili
ENSCPBG00000026943	USB1	90	48.207	ENSNBRG00000008747	usb1	99	54.930	Neolamprologus_brichardi
ENSCPBG00000026943	USB1	95	60.837	ENSNLEG00000003340	USB1	92	65.217	Nomascus_leucogenys
ENSCPBG00000026943	USB1	58	51.190	ENSMEUG00000003328	-	82	56.000	Notamacropus_eugenii
ENSCPBG00000026943	USB1	60	64.706	ENSOPRG00000011803	USB1	72	64.706	Ochotona_princeps
ENSCPBG00000026943	USB1	100	62.724	ENSODEG00000016214	USB1	100	60.432	Octodon_degus
ENSCPBG00000026943	USB1	98	50.542	ENSONIG00000011063	usb1	81	55.752	Oreochromis_niloticus
ENSCPBG00000026943	USB1	81	70.354	ENSOANG00000012118	USB1	95	70.354	Ornithorhynchus_anatinus
ENSCPBG00000026943	USB1	87	51.653	ENSORLG00000012479	usb1	86	52.542	Oryzias_latipes
ENSCPBG00000026943	USB1	85	52.542	ENSORLG00020018671	usb1	87	52.542	Oryzias_latipes_hni
ENSCPBG00000026943	USB1	85	52.542	ENSORLG00015009679	usb1	87	52.542	Oryzias_latipes_hsok
ENSCPBG00000026943	USB1	85	51.271	ENSOMEG00000012930	usb1	85	51.271	Oryzias_melastigma
ENSCPBG00000026943	USB1	100	58.065	ENSOGAG00000003273	USB1	91	60.494	Otolemur_garnettii
ENSCPBG00000026943	USB1	93	63.178	ENSOARG00000001107	USB1	93	65.021	Ovis_aries
ENSCPBG00000026943	USB1	100	61.151	ENSPPAG00000042137	USB1	92	65.306	Pan_paniscus
ENSCPBG00000026943	USB1	100	61.151	ENSPPRG00000024797	USB1	100	59.712	Panthera_pardus
ENSCPBG00000026943	USB1	100	61.151	ENSPTIG00000007506	USB1	92	64.082	Panthera_tigris_altaica
ENSCPBG00000026943	USB1	100	56.115	ENSPTRG00000008172	USB1	100	67.757	Pan_troglodytes
ENSCPBG00000026943	USB1	100	62.230	ENSPANG00000025138	USB1	92	66.531	Papio_anubis
ENSCPBG00000026943	USB1	81	58.482	ENSPKIG00000015109	usb1	75	58.482	Paramormyrops_kingsleyae
ENSCPBG00000026943	USB1	81	72.889	ENSPSIG00000004305	USB1	100	72.889	Pelodiscus_sinensis
ENSCPBG00000026943	USB1	80	53.812	ENSPMGG00000017725	usb1	85	53.812	Periophthalmus_magnuspinnatus
ENSCPBG00000026943	USB1	100	60.072	ENSPEMG00000016183	Usb1	100	59.712	Peromyscus_maniculatus_bairdii
ENSCPBG00000026943	USB1	81	51.770	ENSPMAG00000000462	usb1	95	51.770	Petromyzon_marinus
ENSCPBG00000026943	USB1	98	51.254	ENSPFOG00000011130	usb1	82	55.702	Poecilia_formosa
ENSCPBG00000026943	USB1	98	50.896	ENSPLAG00000009820	usb1	82	55.263	Poecilia_latipinna
ENSCPBG00000026943	USB1	98	51.079	ENSPMEG00000006402	usb1	82	55.702	Poecilia_mexicana
ENSCPBG00000026943	USB1	86	52.227	ENSPREG00000001047	usb1	78	56.701	Poecilia_reticulata
ENSCPBG00000026943	USB1	95	58.868	ENSPPYG00000007401	USB1	90	63.877	Pongo_abelii
ENSCPBG00000026943	USB1	100	62.230	ENSPCOG00000022612	USB1	92	65.714	Propithecus_coquereli
ENSCPBG00000026943	USB1	100	60.573	ENSPVAG00000004613	USB1	92	63.223	Pteropus_vampyrus
ENSCPBG00000026943	USB1	98	50.179	ENSPNYG00000022262	usb1	80	54.867	Pundamilia_nyererei
ENSCPBG00000026943	USB1	90	52.988	ENSPNAG00000011736	usb1	79	55.172	Pygocentrus_nattereri
ENSCPBG00000026943	USB1	100	60.573	ENSRNOG00000013216	Usb1	90	64.167	Rattus_norvegicus
ENSCPBG00000026943	USB1	83	62.771	ENSRBIG00000044466	USB1	100	68.692	Rhinopithecus_bieti
ENSCPBG00000026943	USB1	83	68.831	ENSRROG00000029211	USB1	88	68.534	Rhinopithecus_roxellana
ENSCPBG00000026943	USB1	85	66.667	ENSSBOG00000029362	USB1	91	66.667	Saimiri_boliviensis_boliviensis
ENSCPBG00000026943	USB1	79	65.297	ENSSHAG00000006993	USB1	90	65.639	Sarcophilus_harrisii
ENSCPBG00000026943	USB1	82	58.772	ENSSFOG00015023663	usb1	72	58.772	Scleropages_formosus
ENSCPBG00000026943	USB1	98	50.000	ENSSMAG00000015834	usb1	80	54.852	Scophthalmus_maximus
ENSCPBG00000026943	USB1	80	59.193	ENSSDUG00000002949	usb1	83	59.193	Seriola_dumerili
ENSCPBG00000026943	USB1	80	59.193	ENSSLDG00000014174	usb1	79	59.193	Seriola_lalandi_dorsalis
ENSCPBG00000026943	USB1	77	76.636	ENSSPUG00000006741	USB1	100	76.636	Sphenodon_punctatus
ENSCPBG00000026943	USB1	98	51.773	ENSSPAG00000007484	usb1	81	54.978	Stegastes_partitus
ENSCPBG00000026943	USB1	100	63.441	ENSSSCG00000002807	USB1	91	66.393	Sus_scrofa
ENSCPBG00000026943	USB1	75	77.990	ENSTGUG00000004792	USB1	88	74.667	Taeniopygia_guttata
ENSCPBG00000026943	USB1	98	49.275	ENSTRUG00000021069	usb1	86	51.293	Takifugu_rubripes
ENSCPBG00000026943	USB1	98	44.689	ENSTNIG00000000626	usb1	83	48.661	Tetraodon_nigroviridis
ENSCPBG00000026943	USB1	81	50.000	ENSTBEG00000001507	USB1	97	50.000	Tupaia_belangeri
ENSCPBG00000026943	USB1	100	63.441	ENSUAMG00000016823	USB1	100	61.511	Ursus_americanus
ENSCPBG00000026943	USB1	77	66.822	ENSUMAG00000021369	USB1	100	66.822	Ursus_maritimus
ENSCPBG00000026943	USB1	99	65.108	ENSVVUG00000023700	USB1	92	67.364	Vulpes_vulpes
ENSCPBG00000026943	USB1	78	60.092	ENSXETG00000013795	usb1	90	59.735	Xenopus_tropicalis
ENSCPBG00000026943	USB1	82	55.702	ENSXMAG00000024687	usb1	67	55.702	Xiphophorus_maculatus