EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000027823 (Gene tree)
Gene ID: 101942768
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 100065 bases
Position: chrKK083015.1:956689-1056753
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000040486	Upf2	PF04050.14	3.4e-33	1	1
ENSCPBP00000040488	Upf2	PF04050.14	5.9e-33	1	1
ENSCPBP00000040488	MIF4G	PF02854.19	3.1e-78	1	3
ENSCPBP00000040488	MIF4G	PF02854.19	3.1e-78	2	3
ENSCPBP00000040488	MIF4G	PF02854.19	3.1e-78	3	3
ENSCPBP00000040486	MIF4G	PF02854.19	3.7e-78	1	3
ENSCPBP00000040486	MIF4G	PF02854.19	3.7e-78	2	3
ENSCPBP00000040486	MIF4G	PF02854.19	3.7e-78	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000047425	UPF2-201	3768	XM_024108961	ENSCPBP00000040486	1255 (aa)	XP_023964729	-
ENSCPBT00000047427	UPF2-202	3744	-	ENSCPBP00000040488	1247 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000027823's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000027823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000027823	UPF2	100	92.441	ENSG00000151461	UPF2	99	92.598	Homo_sapiens
ENSCPBG00000027823	UPF2	100	77.412	ENSAPOG00000015837	UPF2	100	77.255	Acanthochromis_polyacanthus
ENSCPBG00000027823	UPF2	100	93.144	ENSAMEG00000004586	UPF2	99	92.277	Ailuropoda_melanoleuca
ENSCPBG00000027823	UPF2	100	81.157	ENSACIG00000018078	UPF2	100	81.548	Amphilophus_citrinellus
ENSCPBG00000027823	UPF2	100	81.455	ENSAOCG00000016766	UPF2	99	81.612	Amphiprion_ocellaris
ENSCPBG00000027823	UPF2	100	81.534	ENSAPEG00000019084	UPF2	99	81.690	Amphiprion_percula
ENSCPBG00000027823	UPF2	100	80.811	ENSATEG00000021677	UPF2	99	80.938	Anabas_testudineus
ENSCPBG00000027823	UPF2	100	89.213	ENSAPLG00000010287	UPF2	99	88.165	Anas_platyrhynchos
ENSCPBG00000027823	UPF2	100	93.144	ENSACAG00000009259	UPF2	99	93.381	Anolis_carolinensis
ENSCPBG00000027823	UPF2	100	83.807	ENSANAG00000028451	UPF2	99	83.886	Aotus_nancymaae
ENSCPBG00000027823	UPF2	100	81.016	ENSACLG00000012696	UPF2	99	81.548	Astatotilapia_calliptera
ENSCPBG00000027823	UPF2	100	82.238	ENSAMXG00000013700	UPF2	99	82.473	Astyanax_mexicanus
ENSCPBG00000027823	UPF2	100	93.381	ENSBTAG00000000288	UPF2	99	100.000	Bos_taurus
ENSCPBG00000027823	UPF2	64	30.351	WBGene00004881	smg-3	69	30.472	Caenorhabditis_elegans
ENSCPBG00000027823	UPF2	100	92.435	ENSCJAG00000020685	UPF2	99	92.671	Callithrix_jacchus
ENSCPBG00000027823	UPF2	100	93.144	ENSCAFG00000004839	UPF2	99	92.277	Canis_familiaris
ENSCPBG00000027823	UPF2	97	98.522	ENSCAFG00020005882	UPF2	100	98.469	Canis_lupus_dingo
ENSCPBG00000027823	UPF2	100	93.302	ENSCHIG00000020359	UPF2	99	93.459	Capra_hircus
ENSCPBG00000027823	UPF2	100	92.514	ENSTSYG00000000935	UPF2	97	98.295	Carlito_syrichta
ENSCPBG00000027823	UPF2	93	84.165	ENSCAPG00000016658	UPF2	100	82.829	Cavia_aperea
ENSCPBG00000027823	UPF2	99	90.801	ENSCPOG00000008809	UPF2	100	91.039	Cavia_porcellus
ENSCPBG00000027823	UPF2	100	86.043	ENSCCAG00000035991	UPF2	99	85.964	Cebus_capucinus
ENSCPBG00000027823	UPF2	100	92.598	ENSCATG00000032679	UPF2	99	92.756	Cercocebus_atys
ENSCPBG00000027823	UPF2	100	92.271	ENSCLAG00000011434	UPF2	99	92.508	Chinchilla_lanigera
ENSCPBG00000027823	UPF2	100	92.598	ENSCSAG00000013372	UPF2	99	92.756	Chlorocebus_sabaeus
ENSCPBG00000027823	UPF2	87	94.981	ENSCHOG00000000422	UPF2	89	94.420	Choloepus_hoffmanni
ENSCPBG00000027823	UPF2	80	48.869	ENSCSAVG00000007772	-	99	48.058	Ciona_savignyi
ENSCPBG00000027823	UPF2	100	87.094	ENSCANG00000040396	UPF2	100	87.173	Colobus_angolensis_palliatus
ENSCPBG00000027823	UPF2	100	92.987	ENSCGRG00001019347	Upf2	99	92.277	Cricetulus_griseus_chok1gshd
ENSCPBG00000027823	UPF2	100	92.987	ENSCGRG00000017993	Upf2	99	92.277	Cricetulus_griseus_crigri
ENSCPBG00000027823	UPF2	92	81.645	ENSCSEG00000003520	UPF2	99	77.172	Cynoglossus_semilaevis
ENSCPBG00000027823	UPF2	99	81.087	ENSCVAG00000006167	UPF2	100	80.378	Cyprinodon_variegatus
ENSCPBG00000027823	UPF2	100	93.065	ENSDNOG00000018160	UPF2	99	93.223	Dasypus_novemcinctus
ENSCPBG00000027823	UPF2	100	92.041	ENSDORG00000002478	Upf2	99	92.356	Dipodomys_ordii
ENSCPBG00000027823	UPF2	91	36.039	FBgn0029992	Upf2	81	44.037	Drosophila_melanogaster
ENSCPBG00000027823	UPF2	72	98.529	ENSETEG00000011583	-	67	98.529	Echinops_telfairi
ENSCPBG00000027823	UPF2	66	73.826	ENSEBUG00000012448	-	87	73.154	Eptatretus_burgeri
ENSCPBG00000027823	UPF2	100	92.744	ENSEASG00005019274	UPF2	99	96.894	Equus_asinus_asinus
ENSCPBG00000027823	UPF2	100	92.823	ENSECAG00000017022	UPF2	99	93.060	Equus_caballus
ENSCPBG00000027823	UPF2	82	92.926	ENSEEUG00000007819	UPF2	82	92.926	Erinaceus_europaeus
ENSCPBG00000027823	UPF2	100	81.401	ENSELUG00000012014	UPF2	99	82.101	Esox_lucius
ENSCPBG00000027823	UPF2	100	97.765	ENSFCAG00000005785	UPF2	99	92.435	Felis_catus
ENSCPBG00000027823	UPF2	92	96.878	ENSFALG00000001889	UPF2	98	94.878	Ficedula_albicollis
ENSCPBG00000027823	UPF2	100	92.114	ENSFDAG00000014348	UPF2	99	92.508	Fukomys_damarensis
ENSCPBG00000027823	UPF2	99	81.235	ENSFHEG00000009826	UPF2	99	80.888	Fundulus_heteroclitus
ENSCPBG00000027823	UPF2	92	83.765	ENSGMOG00000005557	UPF2	100	79.734	Gadus_morhua
ENSCPBG00000027823	UPF2	100	94.646	ENSGALG00000033772	UPF2	99	94.961	Gallus_gallus
ENSCPBG00000027823	UPF2	100	80.986	ENSGAFG00000020867	UPF2	99	80.673	Gambusia_affinis
ENSCPBG00000027823	UPF2	92	84.728	ENSGACG00000001080	UPF2	100	81.064	Gasterosteus_aculeatus
ENSCPBG00000027823	UPF2	100	97.951	ENSGAGG00000002700	UPF2	99	97.951	Gopherus_agassizii
ENSCPBG00000027823	UPF2	100	92.441	ENSGGOG00000001479	UPF2	99	92.598	Gorilla_gorilla
ENSCPBG00000027823	UPF2	100	81.562	ENSHBUG00000004249	UPF2	100	81.548	Haplochromis_burtoni
ENSCPBG00000027823	UPF2	100	82.005	ENSHGLG00000003822	-	99	82.084	Heterocephalus_glaber_female
ENSCPBG00000027823	UPF2	100	92.271	ENSHGLG00000015176	-	99	92.508	Heterocephalus_glaber_female
ENSCPBG00000027823	UPF2	89	94.699	ENSHGLG00100010036	UPF2	100	88.268	Heterocephalus_glaber_male
ENSCPBG00000027823	UPF2	100	79.111	ENSHCOG00000004025	UPF2	99	79.267	Hippocampus_comes
ENSCPBG00000027823	UPF2	100	81.719	ENSIPUG00000015524	UPF2	99	81.861	Ictalurus_punctatus
ENSCPBG00000027823	UPF2	100	92.829	ENSSTOG00000013075	UPF2	99	93.144	Ictidomys_tridecemlineatus
ENSCPBG00000027823	UPF2	100	91.483	ENSJJAG00000004913	Upf2	99	91.325	Jaculus_jaculus
ENSCPBG00000027823	UPF2	93	85.081	ENSKMAG00000001071	UPF2	93	84.962	Kryptolebias_marmoratus
ENSCPBG00000027823	UPF2	79	80.512	ENSLBEG00000000728	-	93	80.610	Labrus_bergylta
ENSCPBG00000027823	UPF2	92	85.812	ENSLBEG00000016394	-	99	81.577	Labrus_bergylta
ENSCPBG00000027823	UPF2	92	82.115	ENSLACG00000015945	UPF2	100	78.762	Latimeria_chalumnae
ENSCPBG00000027823	UPF2	92	89.224	ENSLOCG00000015698	UPF2	99	85.635	Lepisosteus_oculatus
ENSCPBG00000027823	UPF2	100	92.520	ENSMFAG00000043865	UPF2	99	92.677	Macaca_fascicularis
ENSCPBG00000027823	UPF2	100	92.520	ENSMMUG00000008241	UPF2	99	92.677	Macaca_mulatta
ENSCPBG00000027823	UPF2	82	90.244	ENSMNEG00000008062	UPF2	99	91.479	Macaca_nemestrina
ENSCPBG00000027823	UPF2	95	97.094	ENSMLEG00000036120	UPF2	99	97.330	Mandrillus_leucophaeus
ENSCPBG00000027823	UPF2	100	80.406	ENSMAMG00000018276	UPF2	99	81.392	Mastacembelus_armatus
ENSCPBG00000027823	UPF2	100	81.016	ENSMZEG00005021595	UPF2	99	81.548	Maylandia_zebra
ENSCPBG00000027823	UPF2	99	93.381	ENSMGAG00000004573	UPF2	99	92.829	Meleagris_gallopavo
ENSCPBG00000027823	UPF2	100	90.780	ENSMAUG00000016512	Upf2	99	90.071	Mesocricetus_auratus
ENSCPBG00000027823	UPF2	95	97.959	ENSMICG00000001716	UPF2	99	97.959	Microcebus_murinus
ENSCPBG00000027823	UPF2	100	92.429	ENSMOCG00000008263	Upf2	99	92.666	Microtus_ochrogaster
ENSCPBG00000027823	UPF2	91	82.378	ENSMMOG00000006528	UPF2	100	78.414	Mola_mola
ENSCPBG00000027823	UPF2	93	96.296	ENSMODG00000016794	UPF2	99	93.932	Monodelphis_domestica
ENSCPBG00000027823	UPF2	100	80.893	ENSMALG00000002663	UPF2	100	80.941	Monopterus_albus
ENSCPBG00000027823	UPF2	100	92.435	MGP_CAROLIEiJ_G0023157	Upf2	99	95.985	Mus_caroli
ENSCPBG00000027823	UPF2	100	92.671	ENSMUSG00000043241	Upf2	99	95.985	Mus_musculus
ENSCPBG00000027823	UPF2	100	92.199	MGP_PahariEiJ_G0019217	Upf2	99	95.602	Mus_pahari
ENSCPBG00000027823	UPF2	100	92.908	MGP_SPRETEiJ_G0024075	Upf2	99	95.985	Mus_spretus
ENSCPBG00000027823	UPF2	100	93.065	ENSMPUG00000001064	UPF2	99	92.356	Mustela_putorius_furo
ENSCPBG00000027823	UPF2	100	92.145	ENSMLUG00000000228	UPF2	100	92.223	Myotis_lucifugus
ENSCPBG00000027823	UPF2	100	81.562	ENSNBRG00000013629	UPF2	99	81.548	Neolamprologus_brichardi
ENSCPBG00000027823	UPF2	100	92.520	ENSNLEG00000012058	UPF2	99	92.677	Nomascus_leucogenys
ENSCPBG00000027823	UPF2	57	98.964	ENSMEUG00000002180	-	59	98.964	Notamacropus_eugenii
ENSCPBG00000027823	UPF2	78	97.887	ENSOPRG00000006801	-	82	97.887	Ochotona_princeps
ENSCPBG00000027823	UPF2	100	92.114	ENSODEG00000001290	UPF2	99	92.350	Octodon_degus
ENSCPBG00000027823	UPF2	100	81.562	ENSONIG00000017991	UPF2	99	81.548	Oreochromis_niloticus
ENSCPBG00000027823	UPF2	100	93.065	ENSOCUG00000006230	UPF2	100	93.223	Oryctolagus_cuniculus
ENSCPBG00000027823	UPF2	93	85.204	ENSORLG00000017189	UPF2	99	80.971	Oryzias_latipes
ENSCPBG00000027823	UPF2	93	85.204	ENSORLG00020005969	UPF2	99	80.971	Oryzias_latipes_hni
ENSCPBG00000027823	UPF2	93	85.204	ENSORLG00015005713	UPF2	99	80.971	Oryzias_latipes_hsok
ENSCPBG00000027823	UPF2	100	78.689	ENSOMEG00000023420	UPF2	98	77.743	Oryzias_melastigma
ENSCPBG00000027823	UPF2	100	92.593	ENSOGAG00000005796	UPF2	99	92.750	Otolemur_garnettii
ENSCPBG00000027823	UPF2	100	93.155	ENSOARG00000014587	UPF2	99	93.312	Ovis_aries
ENSCPBG00000027823	UPF2	100	89.108	ENSPPAG00000037953	UPF2	100	89.699	Pan_paniscus
ENSCPBG00000027823	UPF2	100	93.223	ENSPPRG00000000690	UPF2	99	92.435	Panthera_pardus
ENSCPBG00000027823	UPF2	100	93.223	ENSPTIG00000008867	UPF2	99	92.435	Panthera_tigris_altaica
ENSCPBG00000027823	UPF2	100	92.441	ENSPTRG00000002291	UPF2	99	92.598	Pan_troglodytes
ENSCPBG00000027823	UPF2	100	92.598	ENSPANG00000023399	UPF2	99	92.756	Papio_anubis
ENSCPBG00000027823	UPF2	100	81.328	ENSPKIG00000025502	UPF2	99	80.859	Paramormyrops_kingsleyae
ENSCPBG00000027823	UPF2	59	96.016	ENSPSIG00000015158	UPF2	95	96.016	Pelodiscus_sinensis
ENSCPBG00000027823	UPF2	100	80.361	ENSPMGG00000005259	UPF2	100	80.094	Periophthalmus_magnuspinnatus
ENSCPBG00000027823	UPF2	93	86.880	ENSPEMG00000015731	Upf2	99	87.464	Peromyscus_maniculatus_bairdii
ENSCPBG00000027823	UPF2	92	96.101	ENSPCIG00000006656	UPF2	100	93.617	Phascolarctos_cinereus
ENSCPBG00000027823	UPF2	100	81.142	ENSPFOG00000017118	UPF2	99	80.986	Poecilia_formosa
ENSCPBG00000027823	UPF2	100	81.142	ENSPLAG00000005094	UPF2	99	80.986	Poecilia_latipinna
ENSCPBG00000027823	UPF2	100	81.142	ENSPMEG00000017009	UPF2	99	80.986	Poecilia_mexicana
ENSCPBG00000027823	UPF2	100	81.255	ENSPREG00000021880	UPF2	100	81.412	Poecilia_reticulata
ENSCPBG00000027823	UPF2	66	95.084	ENSPPYG00000002089	-	99	95.084	Pongo_abelii
ENSCPBG00000027823	UPF2	91	85.097	ENSPCAG00000000684	UPF2	99	79.354	Procavia_capensis
ENSCPBG00000027823	UPF2	100	89.283	ENSPCOG00000021656	UPF2	100	90.590	Propithecus_coquereli
ENSCPBG00000027823	UPF2	100	85.512	ENSPVAG00000017286	UPF2	99	85.669	Pteropus_vampyrus
ENSCPBG00000027823	UPF2	100	79.062	ENSPNYG00000017096	UPF2	94	87.006	Pundamilia_nyererei
ENSCPBG00000027823	UPF2	100	83.125	ENSPNAG00000009357	UPF2	99	83.359	Pygocentrus_nattereri
ENSCPBG00000027823	UPF2	100	87.677	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSCPBG00000027823	UPF2	100	91.562	ENSRBIG00000037780	UPF2	100	91.719	Rhinopithecus_bieti
ENSCPBG00000027823	UPF2	100	92.283	ENSRROG00000043547	UPF2	99	92.598	Rhinopithecus_roxellana
ENSCPBG00000027823	UPF2	100	92.120	ENSSBOG00000020012	UPF2	99	92.514	Saimiri_boliviensis_boliviensis
ENSCPBG00000027823	UPF2	100	83.699	ENSSFOG00015023788	upf2	100	83.007	Scleropages_formosus
ENSCPBG00000027823	UPF2	91	83.203	ENSSMAG00000007637	UPF2	94	85.714	Scophthalmus_maximus
ENSCPBG00000027823	UPF2	100	80.844	ENSSDUG00000017244	UPF2	99	81.064	Seriola_dumerili
ENSCPBG00000027823	UPF2	93	81.655	ENSSLDG00000016866	UPF2	100	79.451	Seriola_lalandi_dorsalis
ENSCPBG00000027823	UPF2	100	91.095	ENSSARG00000008615	UPF2	99	91.095	Sorex_araneus
ENSCPBG00000027823	UPF2	100	91.647	ENSSPUG00000014544	UPF2	99	92.041	Sphenodon_punctatus
ENSCPBG00000027823	UPF2	69	95.040	ENSSSCG00000011117	-	99	95.040	Sus_scrofa
ENSCPBG00000027823	UPF2	92	96.788	ENSTGUG00000002163	-	100	94.716	Taeniopygia_guttata
ENSCPBG00000027823	UPF2	100	80.938	ENSTRUG00000007519	UPF2	99	80.516	Takifugu_rubripes
ENSCPBG00000027823	UPF2	100	80.787	ENSTNIG00000004453	UPF2	99	80.599	Tetraodon_nigroviridis
ENSCPBG00000027823	UPF2	93	85.267	ENSTBEG00000012679	UPF2	93	85.605	Tupaia_belangeri
ENSCPBG00000027823	UPF2	100	92.823	ENSTTRG00000016388	UPF2	99	92.981	Tursiops_truncatus
ENSCPBG00000027823	UPF2	92	97.917	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSCPBG00000027823	UPF2	100	93.144	ENSUMAG00000012953	UPF2	95	92.277	Ursus_maritimus
ENSCPBG00000027823	UPF2	86	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCPBG00000027823	UPF2	100	93.144	ENSVVUG00000006166	UPF2	99	92.277	Vulpes_vulpes
ENSCPBG00000027823	UPF2	100	85.106	ENSXETG00000033103	UPF2	99	82.508	Xenopus_tropicalis
ENSCPBG00000027823	UPF2	93	85.128	ENSXCOG00000011604	UPF2	100	80.360	Xiphophorus_couchianus
ENSCPBG00000027823	UPF2	100	81.064	ENSXMAG00000017209	UPF2	99	80.673	Xiphophorus_maculatus