EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000027960 (Gene tree)
Gene ID: 101933890
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 172155 bases
Position: chrKK088222.1:9573674-9745828
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000040720	Ago_hook	PF10427.9	2.6e-19	1	1
ENSCPBP00000040719	RRM_1	PF00076.22	0.00029	1	1
ENSCPBP00000040718	RRM_1	PF00076.22	0.00029	1	1
ENSCPBP00000040720	RRM_1	PF00076.22	0.00031	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000047709	TNRC6C-203	5289	-	ENSCPBP00000040720	1762 (aa)	-	-
ENSCPBT00000047708	TNRC6C-202	5589	-	ENSCPBP00000040719	1671 (aa)	-	-
ENSCPBT00000047705	TNRC6C-201	5666	-	ENSCPBP00000040718	1682 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000027960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000027960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000027960	TNRC6C	92	35.966	ENSCPBG00000022932	TNRC6B	91	35.938
ENSCPBG00000027960	TNRC6C	99	44.911	ENSCPBG00000001881	TNRC6A	98	43.292

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000027960	TNRC6C	100	88.017	ENSG00000078687	TNRC6C	100	90.526	Homo_sapiens
ENSCPBG00000027960	TNRC6C	80	56.419	ENSAPOG00000019749	tnrc6c1	100	50.078	Acanthochromis_polyacanthus
ENSCPBG00000027960	TNRC6C	100	84.465	ENSAMEG00000013756	TNRC6C	99	84.517	Ailuropoda_melanoleuca
ENSCPBG00000027960	TNRC6C	99	47.343	ENSACIG00000008075	tnrc6c1	99	48.799	Amphilophus_citrinellus
ENSCPBG00000027960	TNRC6C	78	68.900	ENSAOCG00000023968	tnrc6c1	100	50.366	Amphiprion_ocellaris
ENSCPBG00000027960	TNRC6C	80	57.043	ENSAPEG00000009020	tnrc6c1	100	50.313	Amphiprion_percula
ENSCPBG00000027960	TNRC6C	100	90.805	ENSAPLG00000005456	TNRC6C	94	90.859	Anas_platyrhynchos
ENSCPBG00000027960	TNRC6C	100	91.405	ENSACAG00000016198	TNRC6C	92	91.275	Anolis_carolinensis
ENSCPBG00000027960	TNRC6C	100	87.478	ENSANAG00000021554	TNRC6C	100	87.478	Aotus_nancymaae
ENSCPBG00000027960	TNRC6C	100	49.778	ENSACLG00000000424	tnrc6c1	99	48.499	Astatotilapia_calliptera
ENSCPBG00000027960	TNRC6C	100	84.743	ENSBTAG00000018658	TNRC6C	100	85.098	Bos_taurus
ENSCPBG00000027960	TNRC6C	100	87.183	ENSCJAG00000019431	TNRC6C	100	87.183	Callithrix_jacchus
ENSCPBG00000027960	TNRC6C	100	86.045	ENSCAFG00000005224	TNRC6C	92	86.049	Canis_familiaris
ENSCPBG00000027960	TNRC6C	100	87.618	ENSCAFG00020006661	TNRC6C	100	86.848	Canis_lupus_dingo
ENSCPBG00000027960	TNRC6C	100	84.242	ENSCHIG00000026004	TNRC6C	100	84.019	Capra_hircus
ENSCPBG00000027960	TNRC6C	100	86.400	ENSTSYG00000005403	TNRC6C	100	86.285	Carlito_syrichta
ENSCPBG00000027960	TNRC6C	100	80.577	ENSCAPG00000007307	TNRC6C	93	80.227	Cavia_aperea
ENSCPBG00000027960	TNRC6C	100	85.672	ENSCPOG00000000467	TNRC6C	100	85.796	Cavia_porcellus
ENSCPBG00000027960	TNRC6C	100	87.655	ENSCCAG00000030524	TNRC6C	100	87.655	Cebus_capucinus
ENSCPBG00000027960	TNRC6C	100	88.009	ENSCATG00000033135	TNRC6C	100	88.009	Cercocebus_atys
ENSCPBG00000027960	TNRC6C	100	87.626	ENSCLAG00000011139	TNRC6C	92	87.058	Chinchilla_lanigera
ENSCPBG00000027960	TNRC6C	100	86.003	ENSCSAG00000005167	TNRC6C	93	86.399	Chlorocebus_sabaeus
ENSCPBG00000027960	TNRC6C	75	89.952	ENSCHOG00000000088	TNRC6C	75	90.821	Choloepus_hoffmanni
ENSCPBG00000027960	TNRC6C	100	87.537	ENSCANG00000041771	TNRC6C	100	88.009	Colobus_angolensis_palliatus
ENSCPBG00000027960	TNRC6C	100	84.806	ENSCGRG00001022686	Tnrc6c	100	83.922	Cricetulus_griseus_chok1gshd
ENSCPBG00000027960	TNRC6C	100	85.207	ENSCGRG00000018041	Tnrc6c	100	83.922	Cricetulus_griseus_crigri
ENSCPBG00000027960	TNRC6C	100	49.027	ENSCSEG00000012744	tnrc6c1	95	48.729	Cynoglossus_semilaevis
ENSCPBG00000027960	TNRC6C	99	53.497	ENSDARG00000076847	tnrc6c1	99	54.205	Danio_rerio
ENSCPBG00000027960	TNRC6C	100	87.835	ENSDNOG00000003247	TNRC6C	95	86.551	Dasypus_novemcinctus
ENSCPBG00000027960	TNRC6C	100	82.381	ENSDORG00000004558	Tnrc6c	100	82.145	Dipodomys_ordii
ENSCPBG00000027960	TNRC6C	89	79.496	ENSETEG00000005527	TNRC6C	89	80.247	Echinops_telfairi
ENSCPBG00000027960	TNRC6C	100	87.559	ENSEASG00005004799	TNRC6C	100	87.263	Equus_asinus_asinus
ENSCPBG00000027960	TNRC6C	100	87.559	ENSECAG00000012486	TNRC6C	93	87.393	Equus_caballus
ENSCPBG00000027960	TNRC6C	96	85.582	ENSEEUG00000010008	TNRC6C	96	86.441	Erinaceus_europaeus
ENSCPBG00000027960	TNRC6C	100	85.985	ENSFCAG00000028358	TNRC6C	100	85.985	Felis_catus
ENSCPBG00000027960	TNRC6C	100	89.932	ENSFALG00000000848	TNRC6C	100	89.983	Ficedula_albicollis
ENSCPBG00000027960	TNRC6C	100	86.856	ENSFDAG00000010368	TNRC6C	100	87.119	Fukomys_damarensis
ENSCPBG00000027960	TNRC6C	100	47.963	ENSFHEG00000002936	tnrc6c1	99	48.312	Fundulus_heteroclitus
ENSCPBG00000027960	TNRC6C	100	95.006	ENSGALG00000001725	TNRC6C	100	94.943	Gallus_gallus
ENSCPBG00000027960	TNRC6C	100	51.476	ENSGAFG00000019019	tnrc6c1	99	49.709	Gambusia_affinis
ENSCPBG00000027960	TNRC6C	92	54.584	ENSGACG00000012320	tnrc6c1	92	49.430	Gasterosteus_aculeatus
ENSCPBG00000027960	TNRC6C	100	98.753	ENSGAGG00000022043	TNRC6C	100	98.753	Gopherus_agassizii
ENSCPBG00000027960	TNRC6C	100	87.308	ENSGGOG00000011304	TNRC6C	100	87.249	Gorilla_gorilla
ENSCPBG00000027960	TNRC6C	100	48.447	ENSHBUG00000010846	tnrc6c1	100	48.483	Haplochromis_burtoni
ENSCPBG00000027960	TNRC6C	100	87.389	ENSHGLG00000004809	TNRC6C	93	86.944	Heterocephalus_glaber_female
ENSCPBG00000027960	TNRC6C	100	86.623	ENSHGLG00100012597	TNRC6C	93	86.436	Heterocephalus_glaber_male
ENSCPBG00000027960	TNRC6C	99	53.734	ENSIPUG00000000818	tnrc6c1	93	53.788	Ictalurus_punctatus
ENSCPBG00000027960	TNRC6C	100	86.635	ENSSTOG00000009101	TNRC6C	100	87.019	Ictidomys_tridecemlineatus
ENSCPBG00000027960	TNRC6C	100	84.629	ENSJJAG00000017055	Tnrc6c	92	83.494	Jaculus_jaculus
ENSCPBG00000027960	TNRC6C	98	48.824	ENSKMAG00000021023	tnrc6c1	97	52.421	Kryptolebias_marmoratus
ENSCPBG00000027960	TNRC6C	100	78.320	ENSLACG00000015283	TNRC6C	100	78.938	Latimeria_chalumnae
ENSCPBG00000027960	TNRC6C	99	58.254	ENSLOCG00000013377	tnrc6c1	83	78.496	Lepisosteus_oculatus
ENSCPBG00000027960	TNRC6C	100	87.773	ENSLAFG00000011122	TNRC6C	96	85.680	Loxodonta_africana
ENSCPBG00000027960	TNRC6C	100	88.069	ENSMFAG00000043943	TNRC6C	100	88.069	Macaca_fascicularis
ENSCPBG00000027960	TNRC6C	100	88.069	ENSMMUG00000011924	TNRC6C	100	88.069	Macaca_mulatta
ENSCPBG00000027960	TNRC6C	100	88.009	ENSMNEG00000030405	TNRC6C	100	88.009	Macaca_nemestrina
ENSCPBG00000027960	TNRC6C	100	88.069	ENSMLEG00000033436	TNRC6C	100	88.069	Mandrillus_leucophaeus
ENSCPBG00000027960	TNRC6C	94	57.285	ENSMAMG00000023613	tnrc6c1	100	53.109	Mastacembelus_armatus
ENSCPBG00000027960	TNRC6C	100	49.778	ENSMZEG00005010920	tnrc6c1	99	48.499	Maylandia_zebra
ENSCPBG00000027960	TNRC6C	100	84.122	ENSMGAG00000003906	TNRC6C	94	84.029	Meleagris_gallopavo
ENSCPBG00000027960	TNRC6C	100	85.159	ENSMAUG00000021618	Tnrc6c	100	84.806	Mesocricetus_auratus
ENSCPBG00000027960	TNRC6C	100	88.298	ENSMICG00000003952	TNRC6C	100	87.766	Microcebus_murinus
ENSCPBG00000027960	TNRC6C	100	86.746	ENSMOCG00000015879	Tnrc6c	100	86.609	Microtus_ochrogaster
ENSCPBG00000027960	TNRC6C	79	56.957	ENSMMOG00000005203	tnrc6c1	97	52.306	Mola_mola
ENSCPBG00000027960	TNRC6C	100	89.353	ENSMODG00000001785	TNRC6C	92	88.499	Monodelphis_domestica
ENSCPBG00000027960	TNRC6C	100	86.331	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.207	Mus_caroli
ENSCPBG00000027960	TNRC6C	100	86.036	ENSMUSG00000025571	Tnrc6c	100	85.920	Mus_musculus
ENSCPBG00000027960	TNRC6C	100	86.509	MGP_PahariEiJ_G0018593	Tnrc6c	100	86.379	Mus_pahari
ENSCPBG00000027960	TNRC6C	100	86.095	MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.977	Mus_spretus
ENSCPBG00000027960	TNRC6C	100	83.942	ENSMPUG00000013348	TNRC6C	91	83.799	Mustela_putorius_furo
ENSCPBG00000027960	TNRC6C	100	79.378	ENSMLUG00000014431	TNRC6C	91	79.368	Myotis_lucifugus
ENSCPBG00000027960	TNRC6C	100	86.034	ENSNGAG00000012203	Tnrc6c	92	85.982	Nannospalax_galili
ENSCPBG00000027960	TNRC6C	100	50.672	ENSNBRG00000005344	tnrc6c1	100	48.326	Neolamprologus_brichardi
ENSCPBG00000027960	TNRC6C	100	83.362	ENSNLEG00000000047	TNRC6C	93	83.685	Nomascus_leucogenys
ENSCPBG00000027960	TNRC6C	97	83.475	ENSMEUG00000005104	TNRC6C	100	83.373	Notamacropus_eugenii
ENSCPBG00000027960	TNRC6C	100	87.389	ENSODEG00000012499	TNRC6C	100	87.626	Octodon_degus
ENSCPBG00000027960	TNRC6C	81	56.303	ENSONIG00000002210	tnrc6c1	96	55.767	Oreochromis_niloticus
ENSCPBG00000027960	TNRC6C	99	65.434	ENSOANG00000009758	-	94	63.473	Ornithorhynchus_anatinus
ENSCPBG00000027960	TNRC6C	84	78.274	ENSOCUG00000006122	TNRC6C	87	68.176	Oryctolagus_cuniculus
ENSCPBG00000027960	TNRC6C	100	48.076	ENSORLG00000009837	tnrc6c1	100	69.145	Oryzias_latipes
ENSCPBG00000027960	TNRC6C	100	46.798	ENSORLG00020016510	tnrc6c1	100	50.334	Oryzias_latipes_hni
ENSCPBG00000027960	TNRC6C	81	43.107	ENSORLG00015000171	tnrc6c1	98	46.044	Oryzias_latipes_hsok
ENSCPBG00000027960	TNRC6C	100	48.289	ENSOMEG00000000357	tnrc6c1	99	48.834	Oryzias_melastigma
ENSCPBG00000027960	TNRC6C	100	84.722	ENSOGAG00000007197	TNRC6C	100	84.491	Otolemur_garnettii
ENSCPBG00000027960	TNRC6C	96	80.544	ENSOARG00000006041	TNRC6C	91	79.395	Ovis_aries
ENSCPBG00000027960	TNRC6C	100	87.891	ENSPPAG00000027160	TNRC6C	100	87.891	Pan_paniscus
ENSCPBG00000027960	TNRC6C	100	85.985	ENSPPRG00000018881	TNRC6C	100	85.985	Panthera_pardus
ENSCPBG00000027960	TNRC6C	90	84.716	ENSPTIG00000008791	TNRC6C	70	72.936	Panthera_tigris_altaica
ENSCPBG00000027960	TNRC6C	100	87.891	ENSPTRG00000009699	TNRC6C	100	87.891	Pan_troglodytes
ENSCPBG00000027960	TNRC6C	100	88.225	ENSPANG00000019994	TNRC6C	100	88.225	Papio_anubis
ENSCPBG00000027960	TNRC6C	58	62.892	ENSPKIG00000005428	tnrc6c1	100	51.557	Paramormyrops_kingsleyae
ENSCPBG00000027960	TNRC6C	100	95.021	ENSPSIG00000018069	TNRC6C	100	94.934	Pelodiscus_sinensis
ENSCPBG00000027960	TNRC6C	78	55.699	ENSPMGG00000022911	tnrc6c1	97	64.898	Periophthalmus_magnuspinnatus
ENSCPBG00000027960	TNRC6C	100	85.748	ENSPEMG00000009785	Tnrc6c	100	83.510	Peromyscus_maniculatus_bairdii
ENSCPBG00000027960	TNRC6C	58	86.359	ENSPCIG00000017421	-	99	85.949	Phascolarctos_cinereus
ENSCPBG00000027960	TNRC6C	97	52.129	ENSPFOG00000012560	tnrc6c1	98	60.793	Poecilia_formosa
ENSCPBG00000027960	TNRC6C	97	52.398	ENSPLAG00000021055	tnrc6c1	97	52.784	Poecilia_latipinna
ENSCPBG00000027960	TNRC6C	100	86.177	ENSPPYG00000008679	TNRC6C	91	86.622	Pongo_abelii
ENSCPBG00000027960	TNRC6C	93	90.521	ENSPCAG00000012510	TNRC6C	90	90.521	Procavia_capensis
ENSCPBG00000027960	TNRC6C	100	88.482	ENSPCOG00000021451	TNRC6C	100	88.305	Propithecus_coquereli
ENSCPBG00000027960	TNRC6C	96	88.136	ENSPVAG00000002008	TNRC6C	95	88.136	Pteropus_vampyrus
ENSCPBG00000027960	TNRC6C	100	50.706	ENSPNYG00000014477	tnrc6c1	100	47.460	Pundamilia_nyererei
ENSCPBG00000027960	TNRC6C	100	85.343	ENSRNOG00000022395	Tnrc6c	100	85.579	Rattus_norvegicus
ENSCPBG00000027960	TNRC6C	100	88.187	ENSRBIG00000027777	TNRC6C	100	88.187	Rhinopithecus_bieti
ENSCPBG00000027960	TNRC6C	100	88.187	ENSRROG00000042912	TNRC6C	100	88.187	Rhinopithecus_roxellana
ENSCPBG00000027960	TNRC6C	100	85.367	ENSSBOG00000023981	TNRC6C	100	85.541	Saimiri_boliviensis_boliviensis
ENSCPBG00000027960	TNRC6C	52	91.126	ENSSHAG00000018330	-	100	90.368	Sarcophilus_harrisii
ENSCPBG00000027960	TNRC6C	77	60.157	ENSSFOG00015006475	tnrc6c1	95	53.767	Scleropages_formosus
ENSCPBG00000027960	TNRC6C	83	57.158	ENSSFOG00015004735	-	99	62.304	Scleropages_formosus
ENSCPBG00000027960	TNRC6C	100	49.416	ENSSMAG00000012761	tnrc6c1	99	51.306	Scophthalmus_maximus
ENSCPBG00000027960	TNRC6C	99	50.514	ENSSDUG00000002366	tnrc6c1	98	51.495	Seriola_dumerili
ENSCPBG00000027960	TNRC6C	94	51.340	ENSSLDG00000025613	tnrc6c1	97	51.353	Seriola_lalandi_dorsalis
ENSCPBG00000027960	TNRC6C	91	90.756	ENSSARG00000006816	TNRC6C	91	90.756	Sorex_araneus
ENSCPBG00000027960	TNRC6C	82	90.732	ENSSPUG00000007341	TNRC6C	91	90.453	Sphenodon_punctatus
ENSCPBG00000027960	TNRC6C	78	56.491	ENSSPAG00000014977	tnrc6c1	98	49.657	Stegastes_partitus
ENSCPBG00000027960	TNRC6C	100	81.764	ENSSSCG00000034373	TNRC6C	100	85.981	Sus_scrofa
ENSCPBG00000027960	TNRC6C	100	94.254	ENSTGUG00000007733	TNRC6C	100	94.131	Taeniopygia_guttata
ENSCPBG00000027960	TNRC6C	80	55.989	ENSTRUG00000011685	tnrc6c1	97	51.690	Takifugu_rubripes
ENSCPBG00000027960	TNRC6C	94	55.420	ENSTNIG00000005273	tnrc6c1	100	62.326	Tetraodon_nigroviridis
ENSCPBG00000027960	TNRC6C	64	88.281	ENSTBEG00000005046	TNRC6C	95	88.281	Tupaia_belangeri
ENSCPBG00000027960	TNRC6C	100	87.116	ENSTTRG00000010828	TNRC6C	99	86.912	Tursiops_truncatus
ENSCPBG00000027960	TNRC6C	100	85.512	ENSUMAG00000013614	TNRC6C	93	85.593	Ursus_maritimus
ENSCPBG00000027960	TNRC6C	52	78.490	ENSVPAG00000006765	-	99	78.366	Vicugna_pacos
ENSCPBG00000027960	TNRC6C	100	88.152	ENSVVUG00000015268	TNRC6C	100	88.033	Vulpes_vulpes
ENSCPBG00000027960	TNRC6C	100	77.041	ENSXETG00000019470	tnrc6c	100	76.806	Xenopus_tropicalis
ENSCPBG00000027960	TNRC6C	100	50.250	ENSXMAG00000025971	tnrc6c1	99	49.709	Xiphophorus_maculatus