EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000000395 (Gene tree)
Gene ID: 100713500
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Minus strand
Length: 94489 bases
Position: chrDS562861.1:23154445-23248933
Accession: 100713500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000000346	RRM_1	PF00076.22	9.9e-33	1	2
ENSCPOP00000000346	RRM_1	PF00076.22	9.9e-33	2	2
ENSCPOP00000031459	RRM_1	PF00076.22	2.4e-32	1	2
ENSCPOP00000031459	RRM_1	PF00076.22	2.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000000398	PSPC1-201	1372	-	ENSCPOP00000000346	390 (aa)	-	H0UTU2
ENSCPOT00000047838	PSPC1-202	5372	XM_003477385	ENSCPOP00000031459	520 (aa)	XP_003477433	A0A286Y0W6

Gene Model

Click here to download ENSCPOG00000000395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000000395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000000395	PSPC1	61	62.869	ENSCPOG00000015018	-	79	57.439
ENSCPOG00000000395	PSPC1	89	54.978	ENSCPOG00000038668	-	76	63.912
ENSCPOG00000000395	PSPC1	82	53.583	ENSCPOG00000026604	-	75	49.862
ENSCPOG00000000395	PSPC1	85	67.674	ENSCPOG00000036719	-	78	68.339
ENSCPOG00000000395	PSPC1	91	59.072	ENSCPOG00000010263	-	75	69.613
ENSCPOG00000000395	PSPC1	86	70.060	ENSCPOG00000023605	-	74	67.680

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000000395	PSPC1	100	97.201	ENSG00000121390	PSPC1	100	97.201	Homo_sapiens
ENSCPOG00000000395	PSPC1	83	81.173	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSCPOG00000000395	PSPC1	100	97.121	ENSAMEG00000017420	PSPC1	100	97.121	Ailuropoda_melanoleuca
ENSCPOG00000000395	PSPC1	98	63.846	ENSACIG00000018695	pspc1	87	58.811	Amphilophus_citrinellus
ENSCPOG00000000395	PSPC1	83	80.556	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSCPOG00000000395	PSPC1	83	80.556	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSCPOG00000000395	PSPC1	88	65.598	ENSATEG00000004878	pspc1	80	60.502	Anabas_testudineus
ENSCPOG00000000395	PSPC1	81	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSCPOG00000000395	PSPC1	78	92.822	ENSAPLG00000006246	PSPC1	100	92.822	Anas_platyrhynchos
ENSCPOG00000000395	PSPC1	99	84.571	ENSACAG00000002093	PSPC1	99	84.659	Anolis_carolinensis
ENSCPOG00000000395	PSPC1	75	69.388	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSCPOG00000000395	PSPC1	100	97.313	ENSANAG00000000059	PSPC1	100	97.313	Aotus_nancymaae
ENSCPOG00000000395	PSPC1	99	63.409	ENSACLG00000027220	pspc1	87	58.672	Astatotilapia_calliptera
ENSCPOG00000000395	PSPC1	98	70.886	ENSAMXG00000036881	pspc1	81	71.847	Astyanax_mexicanus
ENSCPOG00000000395	PSPC1	100	96.169	ENSBTAG00000003934	PSPC1	100	96.169	Bos_taurus
ENSCPOG00000000395	PSPC1	100	97.313	ENSCJAG00000004554	PSPC1	100	97.313	Callithrix_jacchus
ENSCPOG00000000395	PSPC1	100	97.313	ENSCAFG00020002009	PSPC1	100	97.313	Canis_lupus_dingo
ENSCPOG00000000395	PSPC1	100	96.169	ENSCHIG00000016708	PSPC1	100	96.169	Capra_hircus
ENSCPOG00000000395	PSPC1	77	91.542	ENSTSYG00000032882	PSPC1	93	85.273	Carlito_syrichta
ENSCPOG00000000395	PSPC1	100	97.313	ENSCCAG00000033498	PSPC1	100	97.313	Cebus_capucinus
ENSCPOG00000000395	PSPC1	100	96.558	ENSCATG00000036434	PSPC1	100	96.558	Cercocebus_atys
ENSCPOG00000000395	PSPC1	89	88.553	ENSCLAG00000005241	PSPC1	99	88.553	Chinchilla_lanigera
ENSCPOG00000000395	PSPC1	98	95.078	ENSCHOG00000008913	PSPC1	100	89.866	Choloepus_hoffmanni
ENSCPOG00000000395	PSPC1	99	87.262	ENSCPBG00000020859	PSPC1	99	86.882	Chrysemys_picta_bellii
ENSCPOG00000000395	PSPC1	79	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSCPOG00000000395	PSPC1	68	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSCPOG00000000395	PSPC1	100	95.985	ENSCGRG00001018368	Pspc1	100	95.985	Cricetulus_griseus_chok1gshd
ENSCPOG00000000395	PSPC1	100	95.985	ENSCGRG00000011724	Pspc1	100	95.985	Cricetulus_griseus_crigri
ENSCPOG00000000395	PSPC1	82	78.616	ENSCVAG00000007679	-	78	68.246	Cyprinodon_variegatus
ENSCPOG00000000395	PSPC1	98	72.468	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSCPOG00000000395	PSPC1	100	95.411	ENSDNOG00000011078	PSPC1	100	95.411	Dasypus_novemcinctus
ENSCPOG00000000395	PSPC1	100	93.690	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSCPOG00000000395	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCPOG00000000395	PSPC1	78	46.951	ENSEBUG00000010133	pspc1	75	49.653	Eptatretus_burgeri
ENSCPOG00000000395	PSPC1	83	73.313	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSCPOG00000000395	PSPC1	100	96.931	ENSEASG00005000119	PSPC1	100	96.931	Equus_asinus_asinus
ENSCPOG00000000395	PSPC1	100	96.931	ENSECAG00000017286	PSPC1	100	96.931	Equus_caballus
ENSCPOG00000000395	PSPC1	82	83.386	ENSEEUG00000011288	-	100	65.192	Erinaceus_europaeus
ENSCPOG00000000395	PSPC1	99	71.571	ENSELUG00000003746	pspc1	78	82.154	Esox_lucius
ENSCPOG00000000395	PSPC1	100	97.505	ENSFCAG00000027841	PSPC1	100	97.505	Felis_catus
ENSCPOG00000000395	PSPC1	90	94.004	ENSFALG00000008750	PSPC1	99	86.578	Ficedula_albicollis
ENSCPOG00000000395	PSPC1	100	96.538	ENSFDAG00000002617	PSPC1	100	96.538	Fukomys_damarensis
ENSCPOG00000000395	PSPC1	74	82.986	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSCPOG00000000395	PSPC1	99	86.907	ENSGALG00000017142	PSPC1	99	86.907	Gallus_gallus
ENSCPOG00000000395	PSPC1	88	74.640	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSCPOG00000000395	PSPC1	85	73.414	ENSGACG00000014901	pspc1	93	73.433	Gasterosteus_aculeatus
ENSCPOG00000000395	PSPC1	84	72.205	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSCPOG00000000395	PSPC1	99	87.072	ENSGAGG00000019164	PSPC1	99	86.692	Gopherus_agassizii
ENSCPOG00000000395	PSPC1	100	97.201	ENSGGOG00000003414	PSPC1	100	97.201	Gorilla_gorilla
ENSCPOG00000000395	PSPC1	98	71.026	ENSHBUG00000001139	pspc1	100	63.925	Haplochromis_burtoni
ENSCPOG00000000395	PSPC1	100	98.846	ENSHGLG00000018811	PSPC1	100	98.846	Heterocephalus_glaber_female
ENSCPOG00000000395	PSPC1	89	93.948	ENSHGLG00100007962	PSPC1	100	93.948	Heterocephalus_glaber_male
ENSCPOG00000000395	PSPC1	93	69.061	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSCPOG00000000395	PSPC1	98	73.902	ENSIPUG00000013192	pspc1	88	73.885	Ictalurus_punctatus
ENSCPOG00000000395	PSPC1	100	97.455	ENSSTOG00000026833	PSPC1	100	97.455	Ictidomys_tridecemlineatus
ENSCPOG00000000395	PSPC1	100	96.176	ENSJJAG00000018334	Pspc1	100	96.176	Jaculus_jaculus
ENSCPOG00000000395	PSPC1	89	55.292	ENSKMAG00000013525	-	84	53.978	Kryptolebias_marmoratus
ENSCPOG00000000395	PSPC1	89	75.358	ENSLBEG00000004474	pspc1	71	76.855	Labrus_bergylta
ENSCPOG00000000395	PSPC1	99	78.286	ENSLACG00000010762	PSPC1	99	78.030	Latimeria_chalumnae
ENSCPOG00000000395	PSPC1	99	78.035	ENSLOCG00000010832	pspc1	99	77.649	Lepisosteus_oculatus
ENSCPOG00000000395	PSPC1	100	95.793	ENSLAFG00000010968	PSPC1	100	96.176	Loxodonta_africana
ENSCPOG00000000395	PSPC1	100	96.558	ENSMFAG00000032728	PSPC1	100	96.558	Macaca_fascicularis
ENSCPOG00000000395	PSPC1	100	96.558	ENSMMUG00000020262	PSPC1	100	96.558	Macaca_mulatta
ENSCPOG00000000395	PSPC1	100	96.558	ENSMNEG00000027401	PSPC1	100	96.558	Macaca_nemestrina
ENSCPOG00000000395	PSPC1	100	98.246	ENSMLEG00000039043	PSPC1	100	98.246	Mandrillus_leucophaeus
ENSCPOG00000000395	PSPC1	86	76.418	ENSMAMG00000004333	pspc1	87	61.702	Mastacembelus_armatus
ENSCPOG00000000395	PSPC1	99	63.409	ENSMZEG00005005726	pspc1	87	58.672	Maylandia_zebra
ENSCPOG00000000395	PSPC1	78	92.611	ENSMGAG00000015134	PSPC1	100	92.611	Meleagris_gallopavo
ENSCPOG00000000395	PSPC1	98	90.155	ENSMAUG00000021067	Pspc1	99	90.693	Mesocricetus_auratus
ENSCPOG00000000395	PSPC1	100	96.692	ENSMICG00000013970	PSPC1	100	96.692	Microcebus_murinus
ENSCPOG00000000395	PSPC1	100	94.646	ENSMOCG00000006060	Pspc1	100	95.220	Microtus_ochrogaster
ENSCPOG00000000395	PSPC1	90	53.782	ENSMMOG00000004352	pspc1	59	52.395	Mola_mola
ENSCPOG00000000395	PSPC1	98	96.373	ENSMODG00000008029	PSPC1	78	95.670	Monodelphis_domestica
ENSCPOG00000000395	PSPC1	83	77.469	ENSMALG00000008914	pspc1	88	66.808	Monopterus_albus
ENSCPOG00000000395	PSPC1	100	94.656	MGP_CAROLIEiJ_G0019341	Pspc1	99	96.328	Mus_caroli
ENSCPOG00000000395	PSPC1	100	94.847	ENSMUSG00000021938	Pspc1	100	95.420	Mus_musculus
ENSCPOG00000000395	PSPC1	100	94.656	MGP_PahariEiJ_G0030359	Pspc1	99	96.328	Mus_pahari
ENSCPOG00000000395	PSPC1	100	94.847	MGP_SPRETEiJ_G0020232	Pspc1	100	95.420	Mus_spretus
ENSCPOG00000000395	PSPC1	100	97.505	ENSMPUG00000013347	PSPC1	100	97.505	Mustela_putorius_furo
ENSCPOG00000000395	PSPC1	100	95.992	ENSMLUG00000017663	PSPC1	100	95.992	Myotis_lucifugus
ENSCPOG00000000395	PSPC1	100	96.558	ENSNGAG00000011271	Pspc1	100	96.558	Nannospalax_galili
ENSCPOG00000000395	PSPC1	98	65.385	ENSNBRG00000014059	pspc1	92	61.713	Neolamprologus_brichardi
ENSCPOG00000000395	PSPC1	100	96.750	ENSNLEG00000001294	PSPC1	100	96.750	Nomascus_leucogenys
ENSCPOG00000000395	PSPC1	84	91.797	ENSMEUG00000000476	PSPC1	84	94.141	Notamacropus_eugenii
ENSCPOG00000000395	PSPC1	98	91.123	ENSODEG00000019012	-	100	88.868	Octodon_degus
ENSCPOG00000000395	PSPC1	100	88.269	ENSODEG00000007817	-	100	84.411	Octodon_degus
ENSCPOG00000000395	PSPC1	98	71.282	ENSONIG00000012010	pspc1	99	63.216	Oreochromis_niloticus
ENSCPOG00000000395	PSPC1	77	97.243	ENSOANG00000009017	-	100	97.243	Ornithorhynchus_anatinus
ENSCPOG00000000395	PSPC1	99	65.835	ENSOANG00000011381	-	99	63.724	Ornithorhynchus_anatinus
ENSCPOG00000000395	PSPC1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSCPOG00000000395	PSPC1	83	79.012	ENSORLG00000004232	-	87	64.182	Oryzias_latipes
ENSCPOG00000000395	PSPC1	83	78.395	ENSORLG00020000578	PSPC1	87	65.618	Oryzias_latipes_hni
ENSCPOG00000000395	PSPC1	83	79.321	ENSORLG00015017480	pspc1	82	68.650	Oryzias_latipes_hsok
ENSCPOG00000000395	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSCPOG00000000395	PSPC1	100	97.132	ENSOGAG00000012643	PSPC1	100	97.132	Otolemur_garnettii
ENSCPOG00000000395	PSPC1	100	90.996	ENSOARG00000014163	PSPC1	100	90.996	Ovis_aries
ENSCPOG00000000395	PSPC1	88	96.784	ENSPPAG00000009836	PSPC1	97	96.784	Pan_paniscus
ENSCPOG00000000395	PSPC1	100	97.505	ENSPPRG00000008833	PSPC1	100	97.505	Panthera_pardus
ENSCPOG00000000395	PSPC1	100	82.692	ENSPTIG00000016917	PSPC1	100	82.692	Panthera_tigris_altaica
ENSCPOG00000000395	PSPC1	100	97.201	ENSPTRG00000005677	PSPC1	100	97.201	Pan_troglodytes
ENSCPOG00000000395	PSPC1	100	96.750	ENSPANG00000001992	PSPC1	100	96.750	Papio_anubis
ENSCPOG00000000395	PSPC1	98	75.000	ENSPKIG00000003578	pspc1	81	77.523	Paramormyrops_kingsleyae
ENSCPOG00000000395	PSPC1	99	86.064	ENSPSIG00000005168	PSPC1	99	86.064	Pelodiscus_sinensis
ENSCPOG00000000395	PSPC1	79	70.382	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSCPOG00000000395	PSPC1	100	96.367	ENSPEMG00000015214	Pspc1	100	96.367	Peromyscus_maniculatus_bairdii
ENSCPOG00000000395	PSPC1	75	44.079	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSCPOG00000000395	PSPC1	98	96.623	ENSPCIG00000017680	PSPC1	100	95.785	Phascolarctos_cinereus
ENSCPOG00000000395	PSPC1	89	73.961	ENSPFOG00000003362	pspc1	88	67.865	Poecilia_formosa
ENSCPOG00000000395	PSPC1	97	69.054	ENSPLAG00000011540	pspc1	87	67.865	Poecilia_latipinna
ENSCPOG00000000395	PSPC1	76	68.475	ENSPLAG00000004407	-	52	60.377	Poecilia_latipinna
ENSCPOG00000000395	PSPC1	76	68.581	ENSPMEG00000001025	-	51	60.377	Poecilia_mexicana
ENSCPOG00000000395	PSPC1	97	68.542	ENSPMEG00000008322	pspc1	87	67.442	Poecilia_mexicana
ENSCPOG00000000395	PSPC1	97	68.286	ENSPREG00000007786	pspc1	87	67.442	Poecilia_reticulata
ENSCPOG00000000395	PSPC1	100	96.558	ENSPPYG00000005186	PSPC1	100	96.558	Pongo_abelii
ENSCPOG00000000395	PSPC1	72	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCPOG00000000395	PSPC1	98	97.409	ENSPCOG00000014364	PSPC1	100	92.543	Propithecus_coquereli
ENSCPOG00000000395	PSPC1	98	97.917	ENSPVAG00000005036	PSPC1	100	94.434	Pteropus_vampyrus
ENSCPOG00000000395	PSPC1	99	64.467	ENSPNYG00000008893	pspc1	100	54.478	Pundamilia_nyererei
ENSCPOG00000000395	PSPC1	98	73.575	ENSPNAG00000016511	pspc1	100	67.978	Pygocentrus_nattereri
ENSCPOG00000000395	PSPC1	100	94.837	ENSRNOG00000020782	Pspc1	99	96.537	Rattus_norvegicus
ENSCPOG00000000395	PSPC1	94	97.741	ENSRBIG00000036057	PSPC1	100	98.319	Rhinopithecus_bieti
ENSCPOG00000000395	PSPC1	100	97.201	ENSRROG00000036334	PSPC1	100	97.201	Rhinopithecus_roxellana
ENSCPOG00000000395	PSPC1	79	87.651	ENSSBOG00000028172	PSPC1	91	94.624	Saimiri_boliviensis_boliviensis
ENSCPOG00000000395	PSPC1	100	89.143	ENSSHAG00000004696	PSPC1	100	90.476	Sarcophilus_harrisii
ENSCPOG00000000395	PSPC1	84	85.583	ENSSFOG00015001395	pspc1	90	78.140	Scleropages_formosus
ENSCPOG00000000395	PSPC1	91	73.611	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSCPOG00000000395	PSPC1	83	81.173	ENSSDUG00000010651	pspc1	88	67.343	Seriola_dumerili
ENSCPOG00000000395	PSPC1	83	74.303	ENSSLDG00000004284	pspc1	81	61.806	Seriola_lalandi_dorsalis
ENSCPOG00000000395	PSPC1	100	88.269	ENSSARG00000000888	PSPC1	100	90.019	Sorex_araneus
ENSCPOG00000000395	PSPC1	99	74.242	ENSSPUG00000008550	PSPC1	99	74.906	Sphenodon_punctatus
ENSCPOG00000000395	PSPC1	82	66.044	ENSSPUG00000001136	-	53	61.625	Sphenodon_punctatus
ENSCPOG00000000395	PSPC1	87	78.466	ENSSPAG00000001921	pspc1	77	72.791	Stegastes_partitus
ENSCPOG00000000395	PSPC1	100	97.121	ENSSSCG00000009569	PSPC1	100	97.121	Sus_scrofa
ENSCPOG00000000395	PSPC1	90	94.004	ENSTGUG00000011295	PSPC1	100	94.004	Taeniopygia_guttata
ENSCPOG00000000395	PSPC1	83	71.296	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSCPOG00000000395	PSPC1	85	72.727	ENSTNIG00000010358	pspc1	86	65.957	Tetraodon_nigroviridis
ENSCPOG00000000395	PSPC1	98	84.896	ENSTBEG00000002361	PSPC1	100	74.187	Tupaia_belangeri
ENSCPOG00000000395	PSPC1	100	97.121	ENSTTRG00000003343	PSPC1	100	97.121	Tursiops_truncatus
ENSCPOG00000000395	PSPC1	89	97.421	ENSUAMG00000012309	PSPC1	100	97.421	Ursus_americanus
ENSCPOG00000000395	PSPC1	94	97.331	ENSUMAG00000013993	PSPC1	100	97.331	Ursus_maritimus
ENSCPOG00000000395	PSPC1	77	97.995	ENSVPAG00000010029	PSPC1	100	97.995	Vicugna_pacos
ENSCPOG00000000395	PSPC1	100	97.313	ENSVVUG00000006414	PSPC1	100	97.917	Vulpes_vulpes
ENSCPOG00000000395	PSPC1	98	68.354	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSCPOG00000000395	PSPC1	98	68.608	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus