EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPOG00000000467 (Gene tree)
Gene ID: 100729708
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Cavia_porcellus
Status: putative
Strand: Plus strand
Length: 107117 bases
Position: chrDS562931.1:3148817-3255933
Accession: 100729708
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPOP00000000413	Ago_hook	PF10427.9	3.3e-21	1	1
ENSCPOP00000021669	Ago_hook	PF10427.9	3.6e-21	1	1
ENSCPOP00000021669	RRM_1	PF00076.22	0.00021	1	1
ENSCPOP00000000413	RRM_1	PF00076.22	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPOT00000000472	TNRC6C-201	5743	XM_003464874	ENSCPOP00000000413	1892 (aa)	XP_003464922	H0UU05
ENSCPOT00000045456	TNRC6C-202	8212	-	ENSCPOP00000021669	1734 (aa)	-	A0A286X8C8

Gene Model

Click here to download ENSCPOG00000000467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPOG00000000467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPOG00000000467	TNRC6C	99	34.552	ENSCPOG00000005705	TNRC6B	70	38.366
ENSCPOG00000000467	TNRC6C	99	41.469	ENSCPOG00000036684	TNRC6A	97	40.920

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPOG00000000467	TNRC6C	100	88.285	ENSG00000078687	TNRC6C	100	90.355	Homo_sapiens
ENSCPOG00000000467	TNRC6C	95	54.925	ENSAPOG00000019749	tnrc6c1	98	50.054	Acanthochromis_polyacanthus
ENSCPOG00000000467	TNRC6C	99	84.980	ENSAMEG00000013756	TNRC6C	99	84.465	Ailuropoda_melanoleuca
ENSCPOG00000000467	TNRC6C	97	50.967	ENSACIG00000008075	tnrc6c1	74	54.356	Amphilophus_citrinellus
ENSCPOG00000000467	TNRC6C	91	68.000	ENSAOCG00000023968	tnrc6c1	99	49.022	Amphiprion_ocellaris
ENSCPOG00000000467	TNRC6C	94	54.662	ENSAPEG00000009020	tnrc6c1	99	49.333	Amphiprion_percula
ENSCPOG00000000467	TNRC6C	100	83.110	ENSAPLG00000005456	TNRC6C	100	82.210	Anas_platyrhynchos
ENSCPOG00000000467	TNRC6C	100	83.680	ENSACAG00000016198	TNRC6C	98	82.732	Anolis_carolinensis
ENSCPOG00000000467	TNRC6C	100	87.605	ENSANAG00000021554	TNRC6C	100	89.816	Aotus_nancymaae
ENSCPOG00000000467	TNRC6C	99	47.246	ENSACLG00000000424	tnrc6c1	93	53.382	Astatotilapia_calliptera
ENSCPOG00000000467	TNRC6C	100	84.702	ENSBTAG00000018658	TNRC6C	100	86.738	Bos_taurus
ENSCPOG00000000467	TNRC6C	100	87.773	ENSCJAG00000019431	TNRC6C	100	89.698	Callithrix_jacchus
ENSCPOG00000000467	TNRC6C	99	87.507	ENSCAFG00000005224	TNRC6C	99	87.141	Canis_familiaris
ENSCPOG00000000467	TNRC6C	99	89.163	ENSCAFG00020006661	TNRC6C	100	88.263	Canis_lupus_dingo
ENSCPOG00000000467	TNRC6C	100	86.290	ENSCHIG00000026004	TNRC6C	100	84.906	Capra_hircus
ENSCPOG00000000467	TNRC6C	97	89.501	ENSTSYG00000005403	TNRC6C	100	89.211	Carlito_syrichta
ENSCPOG00000000467	TNRC6C	100	93.868	ENSCAPG00000007307	TNRC6C	100	93.694	Cavia_aperea
ENSCPOG00000000467	TNRC6C	100	88.390	ENSCCAG00000030524	TNRC6C	100	90.349	Cebus_capucinus
ENSCPOG00000000467	TNRC6C	100	88.166	ENSCATG00000033135	TNRC6C	100	90.112	Cercocebus_atys
ENSCPOG00000000467	TNRC6C	100	95.159	ENSCLAG00000011139	TNRC6C	99	94.706	Chinchilla_lanigera
ENSCPOG00000000467	TNRC6C	99	88.598	ENSCSAG00000005167	TNRC6C	99	88.337	Chlorocebus_sabaeus
ENSCPOG00000000467	TNRC6C	76	90.287	ENSCHOG00000000088	TNRC6C	75	89.068	Choloepus_hoffmanni
ENSCPOG00000000467	TNRC6C	100	85.796	ENSCPBG00000027960	TNRC6C	100	85.672	Chrysemys_picta_bellii
ENSCPOG00000000467	TNRC6C	100	87.773	ENSCANG00000041771	TNRC6C	100	89.698	Colobus_angolensis_palliatus
ENSCPOG00000000467	TNRC6C	100	88.188	ENSCGRG00001022686	Tnrc6c	100	87.662	Cricetulus_griseus_chok1gshd
ENSCPOG00000000467	TNRC6C	100	88.594	ENSCGRG00000018041	Tnrc6c	100	87.662	Cricetulus_griseus_crigri
ENSCPOG00000000467	TNRC6C	99	48.218	ENSCSEG00000012744	tnrc6c1	98	48.526	Cynoglossus_semilaevis
ENSCPOG00000000467	TNRC6C	100	53.277	ENSDARG00000076847	tnrc6c1	81	60.331	Danio_rerio
ENSCPOG00000000467	TNRC6C	100	86.277	ENSDNOG00000003247	TNRC6C	99	84.475	Dasypus_novemcinctus
ENSCPOG00000000467	TNRC6C	100	85.387	ENSDORG00000004558	Tnrc6c	100	85.723	Dipodomys_ordii
ENSCPOG00000000467	TNRC6C	90	82.158	ENSETEG00000005527	TNRC6C	90	82.245	Echinops_telfairi
ENSCPOG00000000467	TNRC6C	97	89.502	ENSEASG00005004799	TNRC6C	100	88.849	Equus_asinus_asinus
ENSCPOG00000000467	TNRC6C	100	89.055	ENSECAG00000012486	TNRC6C	99	88.223	Equus_caballus
ENSCPOG00000000467	TNRC6C	96	86.802	ENSEEUG00000010008	TNRC6C	96	85.886	Erinaceus_europaeus
ENSCPOG00000000467	TNRC6C	100	85.330	ENSFCAG00000028358	TNRC6C	100	87.352	Felis_catus
ENSCPOG00000000467	TNRC6C	97	82.350	ENSFALG00000000848	TNRC6C	100	81.952	Ficedula_albicollis
ENSCPOG00000000467	TNRC6C	100	93.368	ENSFDAG00000010368	TNRC6C	100	93.368	Fukomys_damarensis
ENSCPOG00000000467	TNRC6C	78	51.771	ENSFHEG00000002936	tnrc6c1	99	46.859	Fundulus_heteroclitus
ENSCPOG00000000467	TNRC6C	100	84.507	ENSGALG00000001725	TNRC6C	100	86.121	Gallus_gallus
ENSCPOG00000000467	TNRC6C	99	48.815	ENSGAFG00000019019	tnrc6c1	100	49.139	Gambusia_affinis
ENSCPOG00000000467	TNRC6C	93	54.292	ENSGACG00000012320	tnrc6c1	97	49.123	Gasterosteus_aculeatus
ENSCPOG00000000467	TNRC6C	100	85.230	ENSGAGG00000022043	TNRC6C	99	84.264	Gopherus_agassizii
ENSCPOG00000000467	TNRC6C	100	87.780	ENSGGOG00000011304	TNRC6C	100	90.000	Gorilla_gorilla
ENSCPOG00000000467	TNRC6C	99	47.283	ENSHBUG00000010846	tnrc6c1	94	53.829	Haplochromis_burtoni
ENSCPOG00000000467	TNRC6C	100	93.948	ENSHGLG00000004809	TNRC6C	99	93.273	Heterocephalus_glaber_female
ENSCPOG00000000467	TNRC6C	100	92.943	ENSHGLG00100012597	TNRC6C	99	92.663	Heterocephalus_glaber_male
ENSCPOG00000000467	TNRC6C	100	90.161	ENSSTOG00000009101	TNRC6C	100	89.988	Ictidomys_tridecemlineatus
ENSCPOG00000000467	TNRC6C	100	88.704	ENSJJAG00000017055	Tnrc6c	99	88.104	Jaculus_jaculus
ENSCPOG00000000467	TNRC6C	99	47.377	ENSKMAG00000021023	tnrc6c1	100	49.539	Kryptolebias_marmoratus
ENSCPOG00000000467	TNRC6C	100	74.116	ENSLACG00000015283	TNRC6C	100	74.116	Latimeria_chalumnae
ENSCPOG00000000467	TNRC6C	100	56.115	ENSLOCG00000013377	tnrc6c1	99	56.238	Lepisosteus_oculatus
ENSCPOG00000000467	TNRC6C	100	88.812	ENSLAFG00000011122	TNRC6C	99	88.085	Loxodonta_africana
ENSCPOG00000000467	TNRC6C	100	88.278	ENSMFAG00000043943	TNRC6C	100	90.231	Macaca_fascicularis
ENSCPOG00000000467	TNRC6C	100	88.676	ENSMMUG00000011924	TNRC6C	100	90.231	Macaca_mulatta
ENSCPOG00000000467	TNRC6C	100	88.222	ENSMNEG00000030405	TNRC6C	100	90.172	Macaca_nemestrina
ENSCPOG00000000467	TNRC6C	100	88.222	ENSMLEG00000033436	TNRC6C	100	90.172	Mandrillus_leucophaeus
ENSCPOG00000000467	TNRC6C	95	52.595	ENSMAMG00000023613	tnrc6c1	100	49.720	Mastacembelus_armatus
ENSCPOG00000000467	TNRC6C	99	47.246	ENSMZEG00005010920	tnrc6c1	93	53.682	Maylandia_zebra
ENSCPOG00000000467	TNRC6C	100	77.212	ENSMGAG00000003906	TNRC6C	100	77.268	Meleagris_gallopavo
ENSCPOG00000000467	TNRC6C	97	89.138	ENSMAUG00000021618	Tnrc6c	100	88.725	Mesocricetus_auratus
ENSCPOG00000000467	TNRC6C	100	88.671	ENSMICG00000003952	TNRC6C	100	90.527	Microcebus_murinus
ENSCPOG00000000467	TNRC6C	100	90.092	ENSMOCG00000015879	Tnrc6c	100	89.689	Microtus_ochrogaster
ENSCPOG00000000467	TNRC6C	89	55.740	ENSMMOG00000005203	tnrc6c1	78	56.784	Mola_mola
ENSCPOG00000000467	TNRC6C	100	84.364	ENSMODG00000001785	TNRC6C	99	83.431	Monodelphis_domestica
ENSCPOG00000000467	TNRC6C	100	90.035	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.631	Mus_caroli
ENSCPOG00000000467	TNRC6C	100	89.862	ENSMUSG00000025571	Tnrc6c	100	89.459	Mus_musculus
ENSCPOG00000000467	TNRC6C	100	90.035	MGP_PahariEiJ_G0018593	Tnrc6c	100	89.631	Mus_pahari
ENSCPOG00000000467	TNRC6C	100	89.919	MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.516	Mus_spretus
ENSCPOG00000000467	TNRC6C	99	84.274	ENSMPUG00000013348	TNRC6C	98	84.527	Mustela_putorius_furo
ENSCPOG00000000467	TNRC6C	100	80.793	ENSMLUG00000014431	TNRC6C	98	81.068	Myotis_lucifugus
ENSCPOG00000000467	TNRC6C	100	90.419	ENSNGAG00000012203	Tnrc6c	99	89.787	Nannospalax_galili
ENSCPOG00000000467	TNRC6C	99	47.935	ENSNBRG00000005344	tnrc6c1	75	53.897	Neolamprologus_brichardi
ENSCPOG00000000467	TNRC6C	99	85.915	ENSNLEG00000000047	TNRC6C	99	85.886	Nomascus_leucogenys
ENSCPOG00000000467	TNRC6C	98	79.105	ENSMEUG00000005104	TNRC6C	100	78.811	Notamacropus_eugenii
ENSCPOG00000000467	TNRC6C	97	94.656	ENSODEG00000012499	TNRC6C	100	94.656	Octodon_degus
ENSCPOG00000000467	TNRC6C	97	49.857	ENSONIG00000002210	tnrc6c1	94	57.197	Oreochromis_niloticus
ENSCPOG00000000467	TNRC6C	100	68.085	ENSOANG00000009758	-	100	61.652	Ornithorhynchus_anatinus
ENSCPOG00000000467	TNRC6C	82	88.007	ENSOCUG00000006122	TNRC6C	60	73.984	Oryctolagus_cuniculus
ENSCPOG00000000467	TNRC6C	99	47.668	ENSORLG00000009837	tnrc6c1	100	66.543	Oryzias_latipes
ENSCPOG00000000467	TNRC6C	99	46.730	ENSORLG00020016510	tnrc6c1	100	48.330	Oryzias_latipes_hni
ENSCPOG00000000467	TNRC6C	81	43.020	ENSORLG00015000171	tnrc6c1	98	43.481	Oryzias_latipes_hsok
ENSCPOG00000000467	TNRC6C	99	47.944	ENSOMEG00000000357	tnrc6c1	99	48.013	Oryzias_melastigma
ENSCPOG00000000467	TNRC6C	97	87.993	ENSOGAG00000007197	TNRC6C	100	87.703	Otolemur_garnettii
ENSCPOG00000000467	TNRC6C	96	81.893	ENSOARG00000006041	TNRC6C	97	81.963	Ovis_aries
ENSCPOG00000000467	TNRC6C	100	88.390	ENSPPAG00000027160	TNRC6C	100	90.349	Pan_paniscus
ENSCPOG00000000467	TNRC6C	100	85.554	ENSPPRG00000018881	TNRC6C	100	87.589	Panthera_pardus
ENSCPOG00000000467	TNRC6C	90	83.513	ENSPTIG00000008791	TNRC6C	91	81.892	Panthera_tigris_altaica
ENSCPOG00000000467	TNRC6C	100	88.503	ENSPTRG00000009699	TNRC6C	100	90.468	Pan_troglodytes
ENSCPOG00000000467	TNRC6C	100	88.278	ENSPANG00000019994	TNRC6C	100	90.747	Papio_anubis
ENSCPOG00000000467	TNRC6C	94	51.432	ENSPKIG00000005428	tnrc6c1	100	49.805	Paramormyrops_kingsleyae
ENSCPOG00000000467	TNRC6C	100	84.023	ENSPSIG00000018069	TNRC6C	100	83.563	Pelodiscus_sinensis
ENSCPOG00000000467	TNRC6C	86	54.194	ENSPMGG00000022911	tnrc6c1	97	62.753	Periophthalmus_magnuspinnatus
ENSCPOG00000000467	TNRC6C	100	89.788	ENSPEMG00000009785	Tnrc6c	99	89.681	Peromyscus_maniculatus_bairdii
ENSCPOG00000000467	TNRC6C	56	82.510	ENSPCIG00000017421	-	99	81.996	Phascolarctos_cinereus
ENSCPOG00000000467	TNRC6C	99	48.974	ENSPFOG00000012560	tnrc6c1	97	53.753	Poecilia_formosa
ENSCPOG00000000467	TNRC6C	97	49.416	ENSPLAG00000021055	tnrc6c1	100	49.612	Poecilia_latipinna
ENSCPOG00000000467	TNRC6C	100	88.845	ENSPPYG00000008679	TNRC6C	98	88.860	Pongo_abelii
ENSCPOG00000000467	TNRC6C	93	92.417	ENSPCAG00000012510	TNRC6C	94	92.417	Procavia_capensis
ENSCPOG00000000467	TNRC6C	97	91.060	ENSPCOG00000021451	TNRC6C	100	90.764	Propithecus_coquereli
ENSCPOG00000000467	TNRC6C	96	86.361	ENSPVAG00000002008	TNRC6C	95	86.585	Pteropus_vampyrus
ENSCPOG00000000467	TNRC6C	99	46.890	ENSPNYG00000014477	tnrc6c1	94	53.558	Pundamilia_nyererei
ENSCPOG00000000467	TNRC6C	97	89.692	ENSRNOG00000022395	Tnrc6c	100	89.396	Rattus_norvegicus
ENSCPOG00000000467	TNRC6C	100	88.054	ENSRBIG00000027777	TNRC6C	100	89.994	Rhinopithecus_bieti
ENSCPOG00000000467	TNRC6C	100	88.110	ENSRROG00000042912	TNRC6C	100	90.053	Rhinopithecus_roxellana
ENSCPOG00000000467	TNRC6C	100	87.957	ENSSBOG00000023981	TNRC6C	100	87.942	Saimiri_boliviensis_boliviensis
ENSCPOG00000000467	TNRC6C	51	85.714	ENSSHAG00000018330	-	100	84.957	Sarcophilus_harrisii
ENSCPOG00000000467	TNRC6C	61	55.949	ENSSFOG00015004735	-	99	60.836	Scleropages_formosus
ENSCPOG00000000467	TNRC6C	93	58.256	ENSSFOG00015006475	tnrc6c1	73	59.597	Scleropages_formosus
ENSCPOG00000000467	TNRC6C	99	48.230	ENSSMAG00000012761	tnrc6c1	99	47.536	Scophthalmus_maximus
ENSCPOG00000000467	TNRC6C	99	50.471	ENSSDUG00000002366	tnrc6c1	98	50.462	Seriola_dumerili
ENSCPOG00000000467	TNRC6C	97	49.390	ENSSLDG00000025613	tnrc6c1	100	49.723	Seriola_lalandi_dorsalis
ENSCPOG00000000467	TNRC6C	91	88.793	ENSSARG00000006816	TNRC6C	91	88.546	Sorex_araneus
ENSCPOG00000000467	TNRC6C	80	82.210	ENSSPUG00000007341	TNRC6C	97	81.445	Sphenodon_punctatus
ENSCPOG00000000467	TNRC6C	76	53.551	ENSSPAG00000014977	tnrc6c1	98	48.325	Stegastes_partitus
ENSCPOG00000000467	TNRC6C	97	84.095	ENSSSCG00000034373	TNRC6C	100	87.154	Sus_scrofa
ENSCPOG00000000467	TNRC6C	100	85.920	ENSTGUG00000007733	TNRC6C	100	85.460	Taeniopygia_guttata
ENSCPOG00000000467	TNRC6C	78	52.929	ENSTRUG00000011685	tnrc6c1	78	53.960	Takifugu_rubripes
ENSCPOG00000000467	TNRC6C	99	53.879	ENSTNIG00000005273	tnrc6c1	100	58.979	Tetraodon_nigroviridis
ENSCPOG00000000467	TNRC6C	62	89.844	ENSTBEG00000005046	TNRC6C	94	89.844	Tupaia_belangeri
ENSCPOG00000000467	TNRC6C	100	88.448	ENSTTRG00000010828	TNRC6C	99	87.816	Tursiops_truncatus
ENSCPOG00000000467	TNRC6C	99	86.483	ENSUMAG00000013614	TNRC6C	99	85.820	Ursus_maritimus
ENSCPOG00000000467	TNRC6C	50	80.388	ENSVPAG00000006765	-	99	80.390	Vicugna_pacos
ENSCPOG00000000467	TNRC6C	97	90.160	ENSVVUG00000015268	TNRC6C	100	89.686	Vulpes_vulpes
ENSCPOG00000000467	TNRC6C	97	74.457	ENSXETG00000019470	tnrc6c	100	74.118	Xenopus_tropicalis
ENSCPOG00000000467	TNRC6C	99	49.638	ENSXMAG00000025971	tnrc6c1	99	50.527	Xiphophorus_maculatus